|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036152 ID=TCONS_00036152|Name=TCONS_00036152|organism=Clytia hemisphaerica|type=transcript|length=2202bpRun BLAST on NCBI protein sequence of TCONS_00036152-protein >TCONS_00036152-protein ID=TCONS_00036152-protein|Name=TCONS_00036152-protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp MGLPKPSGPFVVGCADIMTKVVQMPTNLTCPSSVLEKGVDFGMFARIYYPRun BLAST on NCBI transcript from alignment at sc0001418:25029..47112- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00036152 ID=TCONS_00036152|Name=TCONS_00036152|organism=Clytia hemisphaerica|type=transcript|length=22084bp|location=Sequence derived from alignment at sc0001418:25029..47112- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001418:25029..47112- >TCONS_00036152 ID=TCONS_00036152|Name=TCONS_00036152|organism=Clytia hemisphaerica|type=CDS|length=13590bp|location=Sequence derived from alignment at sc0001418:25029..47112- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00036152 vs. Swiss-Prot (Human)
Match: PAFA (Platelet-activating factor acetylhydrolase OS=Homo sapiens GN=PLA2G7 PE=1 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 9.172e-46 Identity = 120/362 (33.15%), Postives = 183/362 (50.55%), Query Frame = 2
Query: 122 LPKPSGPFVVGCADIMTKVVQMPTNLTCPSSVLEKGVDFGMFARIYYPTEDESSKHYKEAKILPDEQTSLYASSMFSIFKLKWLSGLASFALRGALQH-SFIDAPLIPQSKYDKTLGLDDETNKKFPLVVFSHGLIGFRHIYSTFCSDLASHGYVVASVEHRDGSALPTYFMDPETNKATSLPYMDHPTTENADEEIIQMRNKQVNRRAEEVSKLLDL-LHVVNKEPEIIENLFPSTFDLKTLKGRLDVEEPLIIGHSFGGATTLNSINKDDRFKCAIVLDPWFLPLTEDEFYESGLKKPTFTIFTERFNWNKNIQRCQRFLDGLPKDYGEVITLKNAVHWDQCDGPGFMPWFLRAIGKFTG 1201
+P+ +GP+ VGC D+M + G F R+YYP++D + +P+++ Y + WL G L G++ + ++PL P KY PLVVFSHGL FR +YS DLASHG++VA+VEHRD SA TY+ ++ + T +EE +RN+QV +RA+E S+ L L L + + +P ++N FD++ LK +D E+ +IGHSFGGAT + ++++D RF+C I LD W PL DE Y S + +P F I +E F + NI + ++ P ++IT++ +VH + D F A GK G
Sbjct: 56 IPRGNGPYSVGCTDLMFD-----------------HTNKGTFLRLYYPSQDNDRL---DTLWIPNKE---YFWGLSKFLGTHWLMGNILRLLFGSMTTPANWNSPLRPGEKY--------------PLVVFSHGLGAFRTLYSAIGIDLASHGFIVAAVEHRDRSASATYYFKDQSAAEIGDKSWLYLRTLKQEEE-THIRNEQVRQRAKECSQALSLILDIDHGKP--VKNALDLKFDMEQLKDSIDREKIAVIGHSFGGATVIQTLSEDQRFRCGIALDAWMFPLG-DEVY-SRIPQPLFFINSEYFQYPANIIKMKKCYS--PDKERKMITIRGSVHQNFAD-------FTFATGKIIG 366 The following BLAST results are available for this feature:
BLAST of TCONS_00036152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.