TCONS_00036152-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00036152-protein
Unique Name	TCONS_00036152-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	452

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00036152-protein ID=TCONS_00036152-protein|Name=TCONS_00036152-protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp
MGLPKPSGPFVVGCADIMTKVVQMPTNLTCPSSVLEKGVDFGMFARIYYP
TEDESSKHYKEAKILPDEQTSLYASSMFSIFKLKWLSGLASFALRGALQH
SFIDAPLIPQSKYDKTLGLDDETNKKFPLVVFSHGLIGFRHIYSTFCSDL
ASHGYVVASVEHRDGSALPTYFMDPETNKATSLPYMDHPTTENADEEIIQ
MRNKQVNRRAEEVSKLLDLLHVVNKEPEIIENLFPSTFDLKTLKGRLDVE
EPLIIGHSFGGATTLNSINKDDRFKCAIVLDPWFLPLTEDEFYESGLKKP
TFTIFTERFNWNKNIQRCQRFLDGLPKDYGEVITLKNAVHWDQCDGPGFM
PWFLRAIGKFTGGIPQDHDYQQGIILQRQIILDYFGKYLKQKTYPMPLLT
DDYLLPDNFFLGMRVFNNKEKTEEVIEDEETIPSKEQVVETGKEEMMKKE
EL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_021259	XLOC_021259	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00036152	TCONS_00036152	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR016715	PAF_acetylhydro_eukaryote
IPR005065	PAF_acetylhydro-like
IPR029058	AB_hydrolase

Vocabulary: **Molecular Function**
Term	Definition
GO:0003847	1-alkyl-2-acetylglycerophosphocholine esterase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0016042	lipid catabolic process

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016042	lipid catabolic process
molecular_function	GO:0003847	1-alkyl-2-acetylglycerophosphocholine esterase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016715	Platelet-activating factor acetylhydrolase, eucaryote	PIRSF	PIRSF018169	PAF_acetylhydrolase	coord: 1..373 e-value: 1.1E-74 score: 249.6
IPR005065	Platelet-activating factor acetylhydrolase-like	PFAM	PF03403	PAF-AH_p_II	coord: 3..353 e-value: 1.3E-70 score: 237.7
IPR029058	Alpha/Beta hydrolase fold	GENE3D	3.40.50.1820		coord: 37..403 e-value: 1.4E-26 score: 92.8
IPR029058	Alpha/Beta hydrolase fold	SUPERFAMILY	53474	alpha/beta-Hydrolases	coord: 45..52 coord: 216..361 coord: 122..172

Blast

[Close]

BLAST of TCONS_00036152-protein vs. Swiss-Prot (Human)
Match: PAFA (Platelet-activating factor acetylhydrolase OS=Homo sapiens GN=PLA2G7 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 8.960e-49
Identity = 127/392 (32.40%), Postives = 195/392 (49.74%), Query Frame = 0

Query:    3 LPKPSGPFVVGCADIMTKVVQMPTNLTCPSSVLEKGVDFGMFARIYYPTEDESSKHYKEAKILPDEQTSLYASSMFSIFKLKWLSGLASFALRGALQH-SFIDAPLIPQSKYDKTLGLDDETNKKFPLVVFSHGLIGFRHIYSTFCSDLASHGYVVASVEHRDGSALPTYFMDPETNKATSLPYMDHPTTENADEEIIQMRNKQVNRRAEEVSKLLDL-LHVVNKEPEIIENLFPSTFDLKTLKGRLDVEEPLIIGHSFGGATTLNSINKDDRFKCAIVLDPWFLPLTEDEFYESGLKKPTFTIFTERFNWNKNIQRCQRFLDGLPKDYGEVITLKNAVHWDQCDGPGFMPWFLRAIGKFTGGIPQ---DHDYQQGIILQRQIILDYFGKYL 389
            +P+ +GP+ VGC D+M                     + G F R+YYP++D       +   +P+++   Y   +       WL G     L G++   +  ++PL P  KY              PLVVFSHGL  FR +YS    DLASHG++VA+VEHRD SA  TY+   ++          +  T   +EE   +RN+QV +RA+E S+ L L L + + +P  ++N     FD++ LK  +D E+  +IGHSFGGAT + ++++D RF+C I LD W  PL  DE Y S + +P F I +E F +  NI + ++     P    ++IT++ +VH +  D       F  A GK  G + +   D D    I L  +  L +  K+L
Sbjct:   56 IPRGNGPYSVGCTDLMFD-----------------HTNKGTFLRLYYPSQDNDRL---DTLWIPNKE---YFWGLSKFLGTHWLMGNILRLLFGSMTTPANWNSPLRPGEKY--------------PLVVFSHGLGAFRTLYSAIGIDLASHGFIVAAVEHRDRSASATYYFKDQSAAEIGDKSWLYLRTLKQEEE-THIRNEQVRQRAKECSQALSLILDIDHGKP--VKNALDLKFDMEQLKDSIDREKIAVIGHSFGGATVIQTLSEDQRFRCGIALDAWMFPLG-DEVY-SRIPQPLFFINSEYFQYPANIIKMKKCYS--PDKERKMITIRGSVHQNFAD-------FTFATGKIIGHMLKLKGDIDSNVAIDLSNKASLAFLQKHL 396

The following BLAST results are available for this feature:

BLAST of TCONS_00036152-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00036152-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PAFA	8.960e-49	32.40	Platelet-activating factor acetylhydrolase OS=Homo...	[more]

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TCONS_00036152-protein (polypeptide) - C. hemisphaerica