TCONS_00036138 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036138
Unique NameTCONS_00036138
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length809

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036138 ID=TCONS_00036138|Name=TCONS_00036138|organism=Clytia hemisphaerica|type=transcript|length=809bp
GACGCATTTAACCACCTGAATAATTGATATCCTCAACCAAGAGATTCGAC
TTTTTTCTTGAAAGTCCAATTGCATTCTCGTGTTTTCTTTAatacaattt
tatattttatgtgtTATGTCATTTTTACTCTAATTTTACTCTAAGTATTG
ATGCAACAATGTCTTCTTCATATGGACGACTGGTTAACGATTCCCCTGAA
ATTTATGCAAATTGTGTAATGAAGCGAGAAAGGATTGGAGATTCATTCGc
cctttgtttgtttgtaaagAAAGATATTGATATTGAAATTGGGACTGAGT
TAAGGTATGACTATTGTTTTGGGTTACGGACAGCACATATAGATACTGAT
GCAATGCCATGGAGACTGAATGAAGAGCGTTACGGAAAACCCTGCACAAT
ACCTGTTCCAACTACCTTTGAAAATTTGGAGGCTAAAGAAGAAACAGTGA
AATTGGTCCATTTTGAAGTAGAATATAGGATTGGAGGCGATGGAACAGTA
GAATTGGACGATGGAGAAGCAGAACTGATTGATGGAAAAACAGAACTGAA
CAATGGAGAAGCAGAACTGAACAATGGAGAAGCAGACCTGAATGGTGGAA
AAGCAGAACTGATTGATGAAGAAACAGAACTTAACGACGGAGTGGCAGAA
CTTAACAATGGAGAATTAGAATTCAACAGTGGAAAAGCAGAACTGAACGA
TGGAGAAGCAGAACTGATCGATGTAAAAGCAGAACTCGTCAATGTAAAAA
CAGAACTCATCCATGTAAAAACAGAACTTATCGATGGAGAAGCAGAACTG
AACAATGNN
Run BLAST on NCBI

protein sequence of TCONS_00036138-protein

>TCONS_00036138-protein ID=TCONS_00036138-protein|Name=TCONS_00036138-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
MSSSYGRLVNDSPEIYANCVMKRERIGDSFALCLFVKKDIDIEIGTELRY
DYCFGLRTAHIDTDAMPWRLNEERYGKPCTIPVPTTFENLEAKEETVKLV
HFEVEYRIGGDGTVELDDGEAELIDGKTELNNGEAELNNGEADLNGGKAE
LIDEETELNDGVAELNNGELEFNSGKAELNDGEAELIDVKAELVNVKTEL
IHVKTELIDGEAELNNX
Run BLAST on NCBI

transcript from alignment at sc0001417:60752..62414-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036138 ID=TCONS_00036138|Name=TCONS_00036138|organism=Clytia hemisphaerica|type=transcript|length=1663bp|location=Sequence derived from alignment at sc0001417:60752..62414- (Clytia hemisphaerica)
GACGCATTTAACCACCTGAATAATTGATATCCTCAACCAAGAGATTCGAC
TTTTTTCTTGAAAGTCCAATTGCATTCTCGTGTTTTCTTTAATACAATTT
TATATTTTATGTGTTATGTCATTTTTACTCTAATTTTACTCTAAGTATTG
ATGCAACAATGTCTTCTTCATATGGACGACTGGTTAACGATTCCCCTGAA
ATTTATGCAAATTGTGTAATGAAGCGAGAAAGGATTGGAGATTCATTCGC
CCTTTGTTTGTTTGTAAAGAAAGATATTGATATTGAAATTGGGACTGAGT
TAAGGTAAAAATCTGGTTCTTTGTAAGGTTAATCAGGTTTTTTTACAACT
TGAACAACATTTTGAAGGGAGCTCTAGCTGGAATATCAGAAAAAATAATA
GTACAGTACTAACAAAAGTACTTAAATTAACTTAACTTAAATTAGTACTT
AATAATTACTACTTTTAACTTAAATATCTTGTGATCAAGCTATCAAAACC
GTATAAAGCAGGCCTTGTTTCAAGAACCTGGTTACAATTCACGAGAGTGA
TCTGCTTATTGCTTAATAGTTTTTTAAGATTATCTTCTGAAAGTTAATTC
TCTATTTCTTGACTTTCTTGAAATTTTTCTTCCTGGGTACTGAGTTTTAT
CTTTTGAATTTGTTAAAATTTTACATCGGAAAAGGAAATAGAAATTTTTG
CAACAAATAATCTAGGTCTCCGCATACCTTCAGTTGAGTTTAGCTTTTGT
AACACAATTTAAGTTAGACCAAAAAATATTTTTGACTTTTGTTGTAGGTA
TGACTATTGTTTTGGGTTACGGACAGCACATATAGATACTGATGCAATGC
CATGGAGACTGAATGAAGTAAGTTTACTCTATATTATTCAGGCAGATCTT
TAATGTTCATTTATACTGTCAAAATTTTCACATCAAATTAAATCTGTGAA
TAACATGTTTCACGGTCGTTTTTTTTATTCAGGAGCGTTACGGAAAACCC
TGCACAATACCTGTTCCAACTACCTTTGAAAATTTGGTAAGACTTTTATA
TGTGACGATTCATAGCAAAAAGAGTACAAAATTTTGTTTTCATGTGCTAG
GCCTTGAGCGCAATTTACTGATTTGGATTAAATGTTTTTGAATTTTATTT
ACATTGATGCTCCCCCTTACAAAGAGGTAAAAATGTTGATAAATATTTTA
TATGAGGCGAGTTGAAGTTATTATTTTGGAAGGTCTGATTGTTCAAAATT
CTTTGAAAGTATCGTAACTTTTCGCTCTACAGGAGGCTAAAGAAGAAACA
GTGAAATTGGTCCATTTTGAAGTAGAATATAGGATTGGAGGCGATGGAAC
AGTAGAATTGGACGATGGAGAAGCAGAACTGATTGATGGAAAAACAGAAC
TGAACAATGGAGAAGCAGAACTGAACAATGGAGAAGCAGACCTGAATGGT
GGAAAAGCAGAACTGATTGATGAAGAAACAGAACTTAACGACGGAGTGGC
AGAACTTAACAATGGAGAATTAGAATTCAACAGTGGAAAAGCAGAACTGA
ACGATGGAGAAGCAGAACTGATCGATGTAAAAGCAGAACTCGTCAATGTA
AAAACAGAACTCATCCATGTAAAAACAGAACTTATCGATGGAGAAGCAGA
ACTGAACAATGNN

Coding sequence (CDS) from alignment at sc0001417:60752..62414-

>TCONS_00036138 ID=TCONS_00036138|Name=TCONS_00036138|organism=Clytia hemisphaerica|type=CDS|length=2604bp|location=Sequence derived from alignment at sc0001417:60752..62414- (Clytia hemisphaerica)
GAGGCTAAAGAAGAAACAGTGAAATTGGTCCATTTTGAAGTAGAATATAG
GATTGGAGGCGATGGAACAGTAGAATTGGACGATGGAGAAGCAGAACTGA
TTGATGGAAAAACAGAACTGAACAATGGAGAAGCAGAACTGAACAATGGA
GAAGCAGACCTGAATGGTGGAAAAGCAGAACTGATTGATGAAGAAACAGA
ACTTAACGACGGAGTGGCAGAACTTAACAATGGAGAATTAGAATTCAACA
GTGGAAAAGCAGAACTGAACGATGGAGAAGCAGAACTGATCGATGTAAAA
GCAGAACTCGTCAATGTAAAAACAGAACTCATCCATGTAAAAACAGAACT
TATCGATGGAGAAGCAGAACTGAACAATGNNGAGCGTTACGGAAAACCCT
GCACAATACCTGTTCCAACTACCTTTGAAAATTTGGTATGACTATTGTTT
TGGGTTACGGACAGCACATATAGATACTGATGCAATGCCATGGAGACTGA
ATGAAATGTCTTCTTCATATGGACGACTGGTTAACGATTCCCCTGAAATT
TATGCAAATTGTGTAATGAAGCGAGAAAGGATTGGAGATTCATTCGCCCT
TTGTTTGTTTGTAAAGAAAGATATTGATATTGAAATTGGGACTGAGTTAA
GGAGGCTAAAGAAGAAACAGTGAAATTGGTCCATTTTGAAGTAGAATATA
GGATTGGAGGCGATGGAACAGTAGAATTGGACGATGGAGAAGCAGAACTG
ATTGATGGAAAAACAGAACTGAACAATGGAGAAGCAGAACTGAACAATGG
AGAAGCAGACCTGAATGGTGGAAAAGCAGAACTGATTGATGAAGAAACAG
AACTTAACGACGGAGTGGCAGAACTTAACAATGGAGAATTAGAATTCAAC
AGTGGAAAAGCAGAACTGAACGATGGAGAAGCAGAACTGATCGATGTAAA
AGCAGAACTCGTCAATGTAAAAACAGAACTCATCCATGTAAAAACAGAAC
TTATCGATGGAGAAGCAGAACTGAACAATGNNGAGCGTTACGGAAAACCC
TGCACAATACCTGTTCCAACTACCTTTGAAAATTTGGTATGACTATTGTT
TTGGGTTACGGACAGCACATATAGATACTGATGCAATGCCATGGAGACTG
AATGAAATGTCTTCTTCATATGGACGACTGGTTAACGATTCCCCTGAAAT
TTATGCAAATTGTGTAATGAAGCGAGAAAGGATTGGAGATTCATTCGCCC
TTTGTTTGTTTGTAAAGAAAGATATTGATATTGAAATTGGGACTGAGTTA
AGGAGGCTAAAGAAGAAACAGTGAAATTGGTCCATTTTGAAGTAGAATAT
AGGATTGGAGGCGATGGAACAGTAGAATTGGACGATGGAGAAGCAGAACT
GATTGATGGAAAAACAGAACTGAACAATGGAGAAGCAGAACTGAACAATG
GAGAAGCAGACCTGAATGGTGGAAAAGCAGAACTGATTGATGAAGAAACA
GAACTTAACGACGGAGTGGCAGAACTTAACAATGGAGAATTAGAATTCAA
CAGTGGAAAAGCAGAACTGAACGATGGAGAAGCAGAACTGATCGATGTAA
AAGCAGAACTCGTCAATGTAAAAACAGAACTCATCCATGTAAAAACAGAA
CTTATCGATGGAGAAGCAGAACTGAACAATGNNGAGCGTTACGGAAAACC
CTGCACAATACCTGTTCCAACTACCTTTGAAAATTTGGTATGACTATTGT
TTTGGGTTACGGACAGCACATATAGATACTGATGCAATGCCATGGAGACT
GAATGAAATGTCTTCTTCATATGGACGACTGGTTAACGATTCCCCTGAAA
TTTATGCAAATTGTGTAATGAAGCGAGAAAGGATTGGAGATTCATTCGCC
CTTTGTTTGTTTGTAAAGAAAGATATTGATATTGAAATTGGGACTGAGTT
AAGGAGGCTAAAGAAGAAACAGTGAAATTGGTCCATTTTGAAGTAGAATA
TAGGATTGGAGGCGATGGAACAGTAGAATTGGACGATGGAGAAGCAGAAC
TGATTGATGGAAAAACAGAACTGAACAATGGAGAAGCAGAACTGAACAAT
GGAGAAGCAGACCTGAATGGTGGAAAAGCAGAACTGATTGATGAAGAAAC
AGAACTTAACGACGGAGTGGCAGAACTTAACAATGGAGAATTAGAATTCA
ACAGTGGAAAAGCAGAACTGAACGATGGAGAAGCAGAACTGATCGATGTA
AAAGCAGAACTCGTCAATGTAAAAACAGAACTCATCCATGTAAAAACAGA
ACTTATCGATGGAGAAGCAGAACTGAACAATGNNGAGCGTTACGGAAAAC
CCTGCACAATACCTGTTCCAACTACCTTTGAAAATTTGGTATGACTATTG
TTTTGGGTTACGGACAGCACATATAGATACTGATGCAATGCCATGGAGAC
TGAATGAAATGTCTTCTTCATATGGACGACTGGTTAACGATTCCCCTGAA
ATTTATGCAAATTGTGTAATGAAGCGAGAAAGGATTGGAGATTCATTCGC
CCTTTGTTTGTTTGTAAAGAAAGATATTGATATTGAAATTGGGACTGAGT
TAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021249XLOC_021249Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036138-exon-sc0001417-1575043694:62111..62414TCONS_00036138-exon-sc0001417-1575043694:62111..62414Clytia hemisphaericaexon
TCONS_00036138-exon-sc0001417-1575043694:61548..61617TCONS_00036138-exon-sc0001417-1575043694:61548..61617Clytia hemisphaericaexon
TCONS_00036138-exon-sc0001417-1575043694:61379..61432TCONS_00036138-exon-sc0001417-1575043694:61379..61432Clytia hemisphaericaexon
TCONS_00036138-exon-sc0001417-1575043694:60752..61132TCONS_00036138-exon-sc0001417-1575043694:60752..61132Clytia hemisphaericaexon
TCONS_00036138-exon-sc0001417-1510915933:62111..62414TCONS_00036138-exon-sc0001417-1510915933:62111..62414Clytia hemisphaericaexon
TCONS_00036138-exon-sc0001417-1510915933:61548..61617TCONS_00036138-exon-sc0001417-1510915933:61548..61617Clytia hemisphaericaexon
TCONS_00036138-exon-sc0001417-1510915933:61379..61432TCONS_00036138-exon-sc0001417-1510915933:61379..61432Clytia hemisphaericaexon
TCONS_00036138-exon-sc0001417-1510915933:60752..61132TCONS_00036138-exon-sc0001417-1510915933:60752..61132Clytia hemisphaericaexon
TCONS_00036138-exon-sc0001417-1491911889:62111..62414TCONS_00036138-exon-sc0001417-1491911889:62111..62414Clytia hemisphaericaexon
TCONS_00036138-exon-sc0001417-1491911889:61548..61617TCONS_00036138-exon-sc0001417-1491911889:61548..61617Clytia hemisphaericaexon
TCONS_00036138-exon-sc0001417-1491911889:61379..61432TCONS_00036138-exon-sc0001417-1491911889:61379..61432Clytia hemisphaericaexon
TCONS_00036138-exon-sc0001417-1491911889:60752..61132TCONS_00036138-exon-sc0001417-1491911889:60752..61132Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036138-proteinTCONS_00036138-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001417supercontigsc0001417:60752..62414 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.23005	2.42444	0.9737	0.635886	7.46136	5.14751	10.1719	13.2379	5.05823	2.95665	5.33423	4.24747	4.01421	3.49926	4.26339	8.88389	7.44214	9.04206	4.74476	6.03947	7.78654	7.70863	3.04096	4.22725	0.0621892	0.111005	12.1542	8.36785	9.78336	7.07503
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036138 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top