TCONS_00036107 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036107
Unique NameTCONS_00036107
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036107 ID=TCONS_00036107|Name=TCONS_00036107|organism=Clytia hemisphaerica|type=transcript|length=469bp
CTGATCAGAGCTTTGTGCTAGATTGTTTGAAGCAGGTTTGGAGTTGTTAG
TTTCAAAGTTGTTGTTAACTCTAACTGGTTGAATCTGACCATTTATATTT
GAATTTTGTTCACCAAAGCCATTTTTCAAGTTTGCTCCTGGTTTTTGAGG
TTGTTCATTTGCATTATTAGCCTCGCTTTTGTTCAAAATTGGATTATTTT
GTTCCGGTGGTTGATTCTGATTCTGCACTGATCCATTATTTCTTGCTTTG
GAATTAACAGCTTCCCCAGATAGTGACGGTAAAGCTTTATCCTGACCGAA
TGAGTTACCATTTGAGCTTGGTCGGTTAGTACTGAGAGGGTTAGGATTTT
GAATTGTTGGAAACGTAATGTTAATTATGGCAATTGGTATTTCTGAGGGT
AAGACATCTTCAAGTCTTGTGTTGCTGGGCGACGGAGGTGGTGTAGGTGG
TGGAGATGGTGGTGTAGGC
Run BLAST on NCBI

protein sequence of TCONS_00036107-protein

>TCONS_00036107-protein ID=TCONS_00036107-protein|Name=TCONS_00036107-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
PTPPSPPPTPPPSPSNTRLEDVLPSEIPIAIINITFPTIQNPNPLSTNRP
SSNGNSFGQDKALPSLSGEAVNSKARNNGSVQNQNQPPEQNNPILNKSEA
NNANEQPQKPGANLKNGFGEQNSNINGQIQPVRVNNNFETNNSKPASNNL
AQSSDQ
Run BLAST on NCBI

transcript from alignment at sc0001413:62060..62528

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036107 ID=TCONS_00036107|Name=TCONS_00036107|organism=Clytia hemisphaerica|type=transcript|length=469bp|location=Sequence derived from alignment at sc0001413:62060..62528 (Clytia hemisphaerica)
GCCTACACCACCATCTCCACCACCTACACCACCTCCGTCGCCCAGCAACA
CAAGACTTGAAGATGTCTTACCCTCAGAAATACCAATTGCCATAATTAAC
ATTACGTTTCCAACAATTCAAAATCCTAACCCTCTCAGTACTAACCGACC
AAGCTCAAATGGTAACTCATTCGGTCAGGATAAAGCTTTACCGTCACTAT
CTGGGGAAGCTGTTAATTCCAAAGCAAGAAATAATGGATCAGTGCAGAAT
CAGAATCAACCACCGGAACAAAATAATCCAATTTTGAACAAAAGCGAGGC
TAATAATGCAAATGAACAACCTCAAAAACCAGGAGCAAACTTGAAAAATG
GCTTTGGTGAACAAAATTCAAATATAAATGGTCAGATTCAACCAGTTAGA
GTTAACAACAACTTTGAAACTAACAACTCCAAACCTGCTTCAAACAATCT
AGCACAAAGCTCTGATCAG

Coding sequence (CDS) from alignment at sc0001413:62060..62528

>TCONS_00036107 ID=TCONS_00036107|Name=TCONS_00036107|organism=Clytia hemisphaerica|type=CDS|length=468bp|location=Sequence derived from alignment at sc0001413:62060..62528 (Clytia hemisphaerica)
CCTACACCACCATCTCCACCACCTACACCACCTCCGTCGCCCAGCAACAC
AAGACTTGAAGATGTCTTACCCTCAGAAATACCAATTGCCATAATTAACA
TTACGTTTCCAACAATTCAAAATCCTAACCCTCTCAGTACTAACCGACCA
AGCTCAAATGGTAACTCATTCGGTCAGGATAAAGCTTTACCGTCACTATC
TGGGGAAGCTGTTAATTCCAAAGCAAGAAATAATGGATCAGTGCAGAATC
AGAATCAACCACCGGAACAAAATAATCCAATTTTGAACAAAAGCGAGGCT
AATAATGCAAATGAACAACCTCAAAAACCAGGAGCAAACTTGAAAAATGG
CTTTGGTGAACAAAATTCAAATATAAATGGTCAGATTCAACCAGTTAGAG
TTAACAACAACTTTGAAACTAACAACTCCAAACCTGCTTCAAACAATCTA
GCACAAAGCTCTGATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021228XLOC_021228Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036107-exon-sc0001413-1491911889:62060..62528TCONS_00036107-exon-sc0001413-1491911889:62060..62528Clytia hemisphaericaexon
TCONS_00036107-exon-sc0001413-1510915933:62060..62528TCONS_00036107-exon-sc0001413-1510915933:62060..62528Clytia hemisphaericaexon
TCONS_00036107-exon-sc0001413-1575043694:62060..62528TCONS_00036107-exon-sc0001413-1575043694:62060..62528Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036107-proteinTCONS_00036107-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001413supercontigsc0001413:62060..62528 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.11434	1.03136	0.459945	0	0.27649	0	0.493564	0.565472	0.61986	2.56834	0.204869	0.734945	0	0	0.746071	0.280137	0.312908	0.474338	0.43951	0.784505	0.187104	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036107 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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