TCONS_00036102 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036102
Unique NameTCONS_00036102
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length970

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036102 ID=TCONS_00036102|Name=TCONS_00036102|organism=Clytia hemisphaerica|type=transcript|length=970bp
TTTTGATTGTATGCGTGAAGTCTATAATtataattttatgaaaatttaca
aaagagtgtaaaaatatataatataatatctATGTCCCAGTATATGATTT
TGGTTATCAATTGCAGATAAGCTATAATACAActgtaaaatttcgaaatt
tcatttaaaaatcatATTTGACAGTTTGTTTGCAATCACATATCAGATTG
ATTCTTGACATCAAACTGCATTTTGGTAATTCCTTCTAAAGCACATTGGA
TAGTGTCACCTCCTTTGACAGGACCCACACCACTTGGGGTACCCGTTAAA
ATAATATCACCATACtctaatttcattattttactaATATGACTGATCAA
AAATGGTAGTGAGAAAATCATATCCCGAGTATTCCCACTTTGTCGTGTAA
CACCATTCACTGCTAAATTAATATCAATGTTGTTAACATCCTTAATAGCA
GATTTTGGAATAACATCACTAATCGGACAAAATGTGTCCCAACATTTTGC
TAATAACCAAGGATGGCTGTTCTTTTTAGCGACATCTTGTAAATCCCGCT
CAGTCATGTCTAGCGCAAGTAAATAACTATCAACATGGTCCATAGCTTTT
TCTTCAGGGATCTTTGATCCTTTTTTCCCGATAACAATACCTAATTCTAC
TTCATGGTGAATATTTGTACTTCCCTCAGGTACAATTACTGGTGAGCCTT
CAGTAATAATACTAACAGGTggttttaaaaacaataatGGTTTCGTAGGA
ACAGCATTATTGAGTTCCGCGCAATGTTCTTGGTAATTGCGCCCAACACA
AACAATTTTACGACATATTCTCACAAGTTCTCCACGTGAAATCATACTGA
ATTCTATTTAAAGGCTGTAAACATAGAAACAGATTTGAGATGTTGTAGCA
AATTTTTAATTGAATaaatctttaaactttaaaacagttgacatttaaaa
aaatcgaaGCAATCTTTACT
Run BLAST on NCBI

protein sequence of TCONS_00036102-protein

>TCONS_00036102-protein ID=TCONS_00036102-protein|Name=TCONS_00036102-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MISRGELVRICRKIVCVGRNYQEHCAELNNAVPTKPLLFLKPPVSIITEG
SPVIVPEGSTNIHHEVELGIVIGKKGSKIPEEKAMDHVDSYLLALDMTER
DLQDVAKKNSHPWLLAKCWDTFCPISDVIPKSAIKDVNNIDINLAVNGVT
RQSGNTRDMIFSLPFLISHISKIMKLEYGDIILTGTPSGVGPVKGGDTIQ
CALEGITKMQFDVKNQSDM
Run BLAST on NCBI

transcript from alignment at sc0001413:7035..8004

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036102 ID=TCONS_00036102|Name=TCONS_00036102|organism=Clytia hemisphaerica|type=transcript|length=970bp|location=Sequence derived from alignment at sc0001413:7035..8004 (Clytia hemisphaerica)
AGTAAAGATTGCttcgatttttttaaatgtcaactgttttaaagtttaaa
gatttATTCAATTAAAAATTTGCTACAACATCTCAAATCTGTTTCTATGT
TTACAGCCTTTAAATAGAATTCAGTATGATTTCACGTGGAGAACTTGTGA
GAATATGTCGTAAAATTGTTTGTGTTGGGCGCAATTACCAAGAACATTGC
GCGGAACTCAATAATGCTGTTCCTACGAAACCattattgtttttaaaacc
ACCTGTTAGTATTATTACTGAAGGCTCACCAGTAATTGTACCTGAGGGAA
GTACAAATATTCACCATGAAGTAGAATTAGGTATTGTTATCGGGAAAAAA
GGATCAAAGATCCCTGAAGAAAAAGCTATGGACCATGTTGATAGTTATTT
ACTTGCGCTAGACATGACTGAGCGGGATTTACAAGATGTCGCTAAAAAGA
ACAGCCATCCTTGGTTATTAGCAAAATGTTGGGACACATTTTGTCCGATT
AGTGATGTTATTCCAAAATCTGCTATTAAGGATGTTAACAACATTGATAT
TAATTTAGCAGTGAATGGTGTTACACGACAAAGTGGGAATACTCGGGATA
TGATTTTCTCACTACCATTTTTGATCAGTCATATtagtaaaataatgaaa
ttagaGTATGGTGATATTATTTTAACGGGTACCCCAAGTGGTGTGGGTCC
TGTCAAAGGAGGTGACACTATCCAATGTGCTTTAGAAGGAATTACCAAAA
TGCAGTTTGATGTCAAGAATCAATCTGATATGTGATTGCAAACAAACTGT
CAAATatgatttttaaatgaaatttcgaaattttacagTTGTATTATAGC
TTATCTGCAATTGATAACCAAAATCATATACTGGGACATagatattatat
tatatatttttacactcttttgtaaattttcataaaattataATTATAGA
CTTCACGCATACAATCAAAA

Coding sequence (CDS) from alignment at sc0001413:7035..8004

>TCONS_00036102 ID=TCONS_00036102|Name=TCONS_00036102|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at sc0001413:7035..8004 (Clytia hemisphaerica)
ATGATTTCACGTGGAGAACTTGTGAGAATATGTCGTAAAATTGTTTGTGT
TGGGCGCAATTACCAAGAACATTGCGCGGAACTCAATAATGCTGTTCCTA
CGAAACCattattgtttttaaaaccACCTGTTAGTATTATTACTGAAGGC
TCACCAGTAATTGTACCTGAGGGAAGTACAAATATTCACCATGAAGTAGA
ATTAGGTATTGTTATCGGGAAAAAAGGATCAAAGATCCCTGAAGAAAAAG
CTATGGACCATGTTGATAGTTATTTACTTGCGCTAGACATGACTGAGCGG
GATTTACAAGATGTCGCTAAAAAGAACAGCCATCCTTGGTTATTAGCAAA
ATGTTGGGACACATTTTGTCCGATTAGTGATGTTATTCCAAAATCTGCTA
TTAAGGATGTTAACAACATTGATATTAATTTAGCAGTGAATGGTGTTACA
CGACAAAGTGGGAATACTCGGGATATGATTTTCTCACTACCATTTTTGAT
CAGTCATATtagtaaaataatgaaattagaGTATGGTGATATTATTTTAA
CGGGTACCCCAAGTGGTGTGGGTCCTGTCAAAGGAGGTGACACTATCCAA
TGTGCTTTAGAAGGAATTACCAAAATGCAGTTTGATGTCAAGAATCAATC
TGATATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021223XLOC_021223Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036102-proteinTCONS_00036102-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036102-exon-sc0001413-1491911889:7035..8004TCONS_00036102-exon-sc0001413-1491911889:7035..8004Clytia hemisphaericaexon
TCONS_00036102-exon-sc0001413-1510915933:7035..8004TCONS_00036102-exon-sc0001413-1510915933:7035..8004Clytia hemisphaericaexon
TCONS_00036102-exon-sc0001413-1575043694:7035..8004TCONS_00036102-exon-sc0001413-1575043694:7035..8004Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001413supercontigsc0001413:7035..8004 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
49.2855	49.5282	11.9347	8.64478	33.1284	23.6818	26.4476	30.1923	25.6781	19.2093	15.0118	13.2021	12.8066	8.30723	15.3175	23.0844	23.8777	18.2437	5.62179	7.89549	13.9289	13.2713	71.5701	61.6373	15.0618	16.2891	11.5725	9.80668	35.9706	39.857
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011234Fumarylacetoacetase_C-rel
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0003824 catalytic activity
Blast
[Close]
BLAST of TCONS_00036102 vs. Swiss-Prot (Human)
Match: FAHD1 (Acylpyruvase FAHD1, mitochondrial OS=Homo sapiens GN=FAHD1 PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 1.430e-71
Identity = 104/204 (50.98%), Postives = 140/204 (68.63%), Query Frame = -3 
Query:  201 RKIVCVGRNYQEHCAELNNAVPTKPLLFLKPPVSIITEGSPVIVPEGSTNIHHEVELGIVIGKKGSKIPEEKAMDHVDSYLLALDMTERDLQDVAKKNSHPWLLAKCWDTFCPISDVIPKSAIKDVNNIDINLAVNGVTRQSGNTRDMIFSLPFLISHISKIMKLEYGDIILTGTPSGVGPVKGGDTIQCALEGITKMQFDVKN 812
            + IVCVGRNY +H  E+ +AV ++P+LFLKP  +   EGSP+++P  + N+HHE+ELG+V+GK+   +PE  AMD+V  Y L LDMT RD+QD  KK   PW LAK +   CP+S  +PK  I D + + + L VNG  RQ G T  MIFS+P++IS++SKI+ LE GDIILTGTP GVGPVK  D I+  + G+  M F V+ 
Sbjct:   18 KNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKVEK 221
The following BLAST results are available for this feature:
BLAST of TCONS_00036102 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FAHD11.430e-7150.98Acylpyruvase FAHD1, mitochondrial OS=Homo sapiens ... [more]
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