TCONS_00036100 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036100
Unique NameTCONS_00036100
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1086

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036100 ID=TCONS_00036100|Name=TCONS_00036100|organism=Clytia hemisphaerica|type=transcript|length=1086bp
AGGAAGTTGCTGCCGAAACTGAAGCCATCGTCGAAGAGGTTGTTGCTGAA
GCTGAAGCAGTCGTCGAGGAAGTTGTTGCTGAAACTGAAGCAGTCATCGA
AGAGGCTGCTGCTGAAACTGAAACAATTATTGAGGAAGTTGCTGTCGAAG
CTGAAGTAGTCGTCGAGGAGGTAGCTGCTGCTGAAACTGAAGCTGTTGTT
GAGGAGGCTGCTGCTGAAACTGAAGCAGTCATCGAGGAAGTTGCCGCTGA
GACTGAAGCAGTTGTCGAGGAAGTCGCTGCCGAAACTGAAGCGGTTGTCG
AGGAGGCTGCCGCTGAAACTGAAGCAGTTGTCGAGGAGGCTGCCGCTGAA
ACTGAAGCAGTTGTCGAGGAACTCACTGCCGAAACTGAAGCGGTTGTCGA
GGAGGCTGCCGCTGAAACTGAAGCAGTTGTCGAGGAGGCTGCTGCTGAAA
CTGAAGCAGTCGTCGAGGAAGTTGTTGCTGAGACTGAAGCAGTCGTCGAA
AAAGTTACTGCAGATTCTGAAGCAGTCATCGAAGAGGCAGCTACTGAAAC
TGAAACAGTCGTCGATGAGGTAGCCCCTGAAGTAGAAGCAGTCGCTGAAG
AGGCAGCCCCTGAAGTAGAAGCCGTCGCTGAGGAGGCAGCCCCTGAAGTA
GAAGCAGTCGCTGAGGAGGTAGCTCCTGAGCCAGAGGTTGTAGCAGAAGA
GGCATCTGCTGGACCAGAGAAACCAGAGCCGAAAACTCTTTGGGAAAAGA
TTAAACGaatcttcaatttttaagtCGTCGGCAAACTCAGTTGACGGCGT
AGTAGTGAAGTAGAGTAGACATAGGAGCCAAACAGCCATCGCCAGCAGCT
GAACCATCCATTCCACAAGATCAAGCAGCATTCGACGCGTACAATGCAAA
TTACAAATGTCCGGAATATTACAAACACGATGAATTCGCGTTTTACGATA
TCGAAAACGATATGCAATCGAGTCGAATCGAGCAACCTAGTGCTTTATAA
TAGTTGTTGttttaacaaagaaaattggtgtttttttagattttgttgCT
AACTTGGAACTTGTTCATACTATTGAAATGTAGATT
Run BLAST on NCBI

transcript from alignment at sc0001413:11367..15367+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036100 ID=TCONS_00036100|Name=TCONS_00036100|organism=Clytia hemisphaerica|type=transcript|length=4001bp|location=Sequence derived from alignment at sc0001413:11367..15367+ (Clytia hemisphaerica)
AGGAAGTTGCTGCCGAAACTGAAGCCATCGTCGAAGAGGTTGTTGCTGAA
GCTGAAGCAGTCGTCGAGGAAGTTGTTGCTGAAACTGAAGCAGTCATCGA
AGAGGCTGCTGCTGAAACTGAAACAATTATTGAGGAAGTTGCTGTCGAAG
CTGAAGTAGTCGTCGAGGAGGTAGCTGCTGCTGAAACTGAAGCTGTTGTT
GAGGAGGCTGCTGCTGAAACTGAAGCAGTCATCGAGGAAGTTGCCGCTGA
GACTGAAGCAGTTGTCGAGGAAGTCGCTGCCGAAACTGAAGCGGTTGTCG
AGGAGGCTGCCGCTGAAACTGAAGCAGTTGTCGAGGAGGCTGCCGCTGAA
ACTGAAGCAGTTGTCGAGGAACTCACTGCCGAAACTGAAGCGGTTGTCGA
GGAGGCTGCCGCTGAAACTGAAGCAGTTGTCGAGGAGGCTGCTGCTGAAA
CTGAAGCAGTCGTCGAGGAAGTTGTTGCTGAGACTGAAGCAGTCGTCGAA
AAAGTTACTGCAGATTCTGAAGCAGTCATCGAAGAGGCAGCTACTGAAAC
TGAAACAGTCGTCGATGAGGTAGCCCCTGAAGTAGAAGCAGTCGCTGAAG
AGGCAGCCCCTGAAGTAGAAGCAGTCGCTGAAGAGGCAGCCCCTGAAGTA
GAAGCCGTCGCTGAGGAGGCAGCCCCTGAAGTAGAAGCAGTCGCTGAGGA
GGCAGCCCCTGAAGTAGAAGCAGTCGTTGAGGAGGCAGCCCCTGAAGTAG
AAGCAGTCGCTGAGGAGGCAGCCCCTGAAGTAGAATCAGTTGTTGAGGAG
GTAGCTCCTGAGCCAGAGGTTGTAGCAGAAGAGGCATCTGCTGGACCAGA
GAGTATGTTGTTAATGCTCTTAAATTTTTACGCCCTTAATAGTTgtcttt
ggtttgattttcCCAGCAATCTCGAGTTCGTTATCCTCTGATCTTTAATT
AAGTGCGTCTGAACTTTGCTTTTCTTTCTCTTCCCTTAGAAAAGGGCAAA
TGAATTGAACTTTAGAAACTGCTGCTTTCTTCATCTCCTGCGATTTTCTG
AGTCCTTTTCCTAGCTCTACTTTTACTATCCACTAATACTGAATACTGAT
AATAATTTTCTGTAATTTATTTGTCCTTTTCTAGAACCAGAGCCGAAAAC
TCTTTGGGAAAAGATTAAACGaatcttcaatttttaagtCGTCGGCAAAC
TCAGTTGACGGCGTAGTAGTGAAGTATGTCGTGTTTTATCGTTATATTTA
ACCTTAGATTAGATTTTCAACTTGGTTGGACATGAATAATTCTAACGAGG
GAAATCTGTATATTATTTCAACGGTTTCTTATATCAACTTGGCTACTTCT
TCTCTTGCAATTTTAAGGGTGTCAATATTGtctgttttttcttttcaaat
aacgTCATTCATCGTCAATTtacctttataaaccctggaccaagctattt
CCACCatatttgatcggagtttttatgaaagtggtacccgcaaagaattT
ATAGTTAAGATTTTGTTTGAcaacaaacggcgctacatcacttGCGTGCA
Agcgaaagtagatctagcgctctcgatgcgggtaccactttcaaaaatat
tccgaTCAAAATATGTTGGTTGGCCGGGACTGAGAAACTGCCTCCGGGGT
TTATGTAAAGCTCAATCAACTATGAATTATGAATCATTTCTAAGTTCAAC
GTATTCTGATAATGTAATATCAAGTCTCAAATTGAATGCAATCCCTCTGT
ATCTTTCAATGATCGGAGGGCTTCTTTGAGTCAGTAAcgccatagtataa
gaaagccgcggctggaatgatgacgctattgtttttgtcgttAATGGATG
TTTTATCTGTGTCTCCGTGATTTATAAGAACTAAATCTAAGCTAGCAAAA
TCTTCAACCTGAAAAGTGTTTATAAAATTCAATTAAAGAATAATTACTTT
TCAAGTCTTAGATTTTTCTCACTGCCCTCTAATTAGCTTGTTcgaagtat
attcttataaattccagataaaattttaaaaatttaggaCCAAATAACGC
ACATTTTAAtacaagaactaattttcaaatgttaaactttGAATGCTTGC
CGTCATCTCAATACTGTTGATTTTCGAATGAAGTTTTCAAGAATACTGCT
TgaatattgattttttaataTCAGTAAGAATTGTTCAAAATAATCAGGAA
GGCACTTCGAAGCACttaattttcttcaagttcttaaagcacTGACATTC
TGTTCGCTCTAATATTTTAAACCGAAactcttttcttttactttgatatt
atgaatgcgtgaattatcaagagatttgtgtttatgagcaaaattacgTC
TTACGAGGGACTTTGTTAAAAGTCAGATTAAATTGACAATGGAAATTGTC
ATtgaaccataaaaaaattcgttcttacgacatagatagaacaacagaaa
ttcaactgaactcattccagccgcggctttcttatactatggtaacGCTT
TTCAGGTAATTAACGCTCATTACCATATCTAGGCTTTGCTTACTTTTAGG
TGTACACACTttcacgagcagaaactttcgcgaggtcgaaaaatcgtaac
atttactttcgcgaatttgacaaaaaaaattttcgttagcataaactttc
gcgaatgaggTATATTTTTAGTAGAAAATTCAAGTTTTCGGTGCATAAAA
CCAGTTTTTGATGGACTTTCGCATAATATCTACACTAAATTTTATCCTTG
TTATCATCAAGACGTTTACTTTCGCGACAAgggctaaaattcgcgaaaat
cgtttctgctcgcgaaagtttgtacgcctaataAAGTAGTTGCCTGTCAA
CAGTAATATTGTTAAAAGGTTTTTAGGCCGCTAATGATAAAGAAAATTGT
GTGAGGTATTTCAAATGACCTGCAACTTATATAGCTCGCCTATAACATAT
CACACAAGAATAACTGTGCCGTAGTGTACTCTTCTGACTTTTTCACTCAG
GTTTATTTATCTCAATTTCAAAAGTATTTCTAATCTTTCTACTAGTTTTG
CCTTAAAATGGAAAGAcgtgaaaaattttaaaggtaTAATGAGATATTTG
GCCTCCAGATATTTTCCAAAGTCCTGAGAGAAACAACCGAAAACTTTTCA
GTGCGGATAAGCACAATATAAAAACATATCTGATTAtacctttaattttt
ttaacgacTTTCCATTTCAAAGCAAATCTTAAGGTATTAAGGTATGTTTA
CACCTTTCTTAACACAATATTTTTAATTGGTCATATCTACGTCAAAAGTA
TTTtctgacaaaaaaatcaaaaaaaaggtgtacacataccttactcttag
gtgccaaataaacagggggagttgaaagattttcaacattttaataaacg
ggggtgacgtaattgccggggggttggaaattgtacttctgaaaacccaa
aaataaggtaaatataggctaaaatcaggctatttagagcaaaataaggg
accttctctttgacagcttaaaatattcttaaaaattaataaacgggggg
gtcctaattaGTTCCGGGGGGTTAGAAACttctcgaaaaattaacaagcg
gggggggggtttatAAGAAAAGAAAGGCTCAAAATAGTTGGAGCTAAAAT
TAAGAGCTGATAGTAGTACGCGCTCATTATCATAATAACTACttatcatt
tttctttgtttctcgTTTCCCCAGGTAGAGTAGACATAGGAGCCAAACAG
CCATCGCCAGCAGCTGAACCATCCATTCCACAAGATCAAGCAGCATTCGA
CGCGTACAATGCAAATTACAAATGTCCGGAATATTACAAACACGATGAAT
TCGCGTTTTACGATATCGAAAACGATATGCAATCGAGTCGAATCGAGCAA
CCTAGTGCTTTATAATAGTTGTTGttttaacaaagaaaattggtgttttt
ttagattttgttgCTAACTTGGAACTTGTTCATACTATTGAAATGTAGAT
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021221XLOC_021221Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036100-exon-sc0001413-1491911889:11367..11968TCONS_00036100-exon-sc0001413-1491911889:11367..11968Clytia hemisphaericaexon
TCONS_00036100-exon-sc0001413-1510915933:11367..11968TCONS_00036100-exon-sc0001413-1510915933:11367..11968Clytia hemisphaericaexon
TCONS_00036100-exon-sc0001413-1575043694:11367..11968TCONS_00036100-exon-sc0001413-1575043694:11367..11968Clytia hemisphaericaexon
TCONS_00036100-exon-sc0001413-1491911889:12002..12034TCONS_00036100-exon-sc0001413-1491911889:12002..12034Clytia hemisphaericaexon
TCONS_00036100-exon-sc0001413-1510915933:12002..12034TCONS_00036100-exon-sc0001413-1510915933:12002..12034Clytia hemisphaericaexon
TCONS_00036100-exon-sc0001413-1575043694:12002..12034TCONS_00036100-exon-sc0001413-1575043694:12002..12034Clytia hemisphaericaexon
TCONS_00036100-exon-sc0001413-1491911889:12101..12133TCONS_00036100-exon-sc0001413-1491911889:12101..12133Clytia hemisphaericaexon
TCONS_00036100-exon-sc0001413-1510915933:12101..12133TCONS_00036100-exon-sc0001413-1510915933:12101..12133Clytia hemisphaericaexon
TCONS_00036100-exon-sc0001413-1575043694:12101..12133TCONS_00036100-exon-sc0001413-1575043694:12101..12133Clytia hemisphaericaexon
TCONS_00036100-exon-sc0001413-1491911889:12167..12218TCONS_00036100-exon-sc0001413-1491911889:12167..12218Clytia hemisphaericaexon
TCONS_00036100-exon-sc0001413-1510915933:12167..12218TCONS_00036100-exon-sc0001413-1510915933:12167..12218Clytia hemisphaericaexon
TCONS_00036100-exon-sc0001413-1575043694:12167..12218TCONS_00036100-exon-sc0001413-1575043694:12167..12218Clytia hemisphaericaexon
TCONS_00036100-exon-sc0001413-1491911889:12501..12589TCONS_00036100-exon-sc0001413-1491911889:12501..12589Clytia hemisphaericaexon
TCONS_00036100-exon-sc0001413-1510915933:12501..12589TCONS_00036100-exon-sc0001413-1510915933:12501..12589Clytia hemisphaericaexon
TCONS_00036100-exon-sc0001413-1575043694:12501..12589TCONS_00036100-exon-sc0001413-1575043694:12501..12589Clytia hemisphaericaexon
TCONS_00036100-exon-sc0001413-1491911889:15091..15367TCONS_00036100-exon-sc0001413-1491911889:15091..15367Clytia hemisphaericaexon
TCONS_00036100-exon-sc0001413-1510915933:15091..15367TCONS_00036100-exon-sc0001413-1510915933:15091..15367Clytia hemisphaericaexon
TCONS_00036100-exon-sc0001413-1575043694:15091..15367TCONS_00036100-exon-sc0001413-1575043694:15091..15367Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001413supercontigsc0001413:11367..15367 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.33394	1.8234	0.570612	1.02594	1.0992	0.984401	1.57828	2.64291	0.335091	0.754686	1.15168	0.612388	0.651004	1.16734	0.240411	0.268766	3.08363	2.22712	0	0.353221	4.58416	3.63669	13.812	12.9021	36.791	27.8511	20.5611	15.9672	11.5974	8.90213
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036100 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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