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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036099 ID=TCONS_00036099|Name=TCONS_00036099|organism=Clytia hemisphaerica|type=transcript|length=455bp
TTTCAGTGCTAATTAACAAAATATCTGTACTATAACATCATCTGCTAAAC
AtcaattgcaatgtcttccacacAACTCATCAGATCTCTTCGACAACCAT
TGCAACAATGTGTGTACAGAACCACTGTTCGATCTCTGTCAACAGCAAGA
ACTGTAGCCTGCAAAGTCACCGATAAAGGTAGAGTAGACATAGGAGCCAA
ACAGCCATCGCCAGCAGCTGAACCATCCATTCCACAAGATCAAGCAGCAT
TCGACGCGTACAATGCAAATTACAAATGTCCGGAATATTACAAACACGAT
GAATTCGCGTTTTACGATATCGAAAACGATATGCAATCGAGTCGAATCGA
GCAACCTAGTGCTTTATAATAGTTGTTGttttaacaaagaaaattggtgt
ttttttagattttgttgCTAACTTGGAACTTGTTCATACTATTGAAATGT
AGATT Run BLAST on NCBI transcript from alignment at sc0001413:8151..15367+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036099 ID=TCONS_00036099|Name=TCONS_00036099|organism=Clytia hemisphaerica|type=transcript|length=7217bp|location=Sequence derived from alignment at sc0001413:8151..15367+ (Clytia hemisphaerica)
TTTCAGTGCTAATTAACAAAATATCTGTACTATAACATCATCTGCTAAAC
AtcaattgcaatgtcttccacacAACTCATCAGATCTCTTCGACAACCAT
TGGTATGTATAAattattgttttaatttttattcttAACTGATTGAAACA
CAttcccatttttttttttctttgtaccAATCCGNATTTTTATTCTTAAC
TGATTGAAACACAttcccattttttttttttgctttgataTACAGTACCA
ATACgtggcttttttttaatttaaagatACTGTCTGTTGGCTATTCTGCT
ATGATTTTCCTCTAAATTCTTTAAGAAAACACAACTTAGCAGAATTTAGT
TGAATGATGCTTCTGTGAAGCCAATAGTCAAACATTGACATTATGTAGTA
ACGTTGCTATTTTGGGTGTGAGGATCTTAGATAGTGTGGATGTGAAGCTT
TGTTGATTGTTGTAGAGTCTTCGAGTTTGAATAACAGTGACCTTATGTAC
ATTTTTCCTGTTGCTTTAAGTTGCTTTAAGTAAGCCTATGTTCATTGAAC
AGTGGAGTCTATTTACTCGGACCTTTATAACTTGAATGTCTCCTTGACTC
GAATGAggtttatggtcccttcagttaacaatgccttctAAACCTTATTC
TATGACTCAACATtttcttaactcaaacaaattaGTGTTCGAGTTAGGGA
GACCCAAACCGTAAAACCCATTTGTTTTTTTCCTGTTTGGCAATATCAGA
TTACACCATACAAGAAATATTTGCACAACTTAAATCTATATATTGTTTTC
TCTTCTAGCAACAATGTGTGTACAGAACCACTGTTCGATCTCTGTCAACA
GCAAGAACTGTAGCCTGCAAAGTCACCGATAAAGGTATGTTTTGAATGTT
gtctaaaataccaaaattaaaGATACTGTAgtattacttttattttttat
ttttaaactttacTGTGTATCTAGTTCTAGCTAAACTATATTCTTTAAAT
AATGCGCACTGTTACCAATAACTTATTCTTCTTTTAGCATCTACACCAGT
AGTTGAAGTTGCTGCTGAAAACGCGAAATGTatgatttgttgtttttaac
TGTTGTTACAGCTCTTTAATCTGTTACTTTAGTTTTCCCATGTTTACAAG
ATTCCTCTGTTCATTGGAGAAACTCACCCAGCCCTAGTTTTCGCTTTACA
AGGTGTCACTTACACCCCATACCAGTTGACATCCATTGTATATTAGTATG
AGTAGAGGTGGATGGATGATCACCAATGAAAAGTGCTCTAAAAAAAGGAA
CAATATAATAATATCCATTGTATAGCGTAGTTAGCCTTTTTAAGATGCCC
AAATGCAGAGAAGTGTCGTTCTGGAGGGAATTGATTGTTGGATATGGCTG
CCACACATTGTTTGGAGTGATTCTCGAGCTGTCTAAGGCTCTTAGGCCAA
AGTAGGGTTCCTGGTTTGAGATAACTGGATTATCCACTCAAAACATCGAA
GATCAAACTGTTCACTTCATATGTTTATTCTCTTCTTTTAGCTACAACGC
CTATAGTGGAGGCTGTAGCAGAGGCAATTGCTGATCCCACGCCAGCGGAG
TGTAAGATGTGTCTTCTTTTCGACGCTTAGGTCGTCCCTCTGTTAGAATC
AGAGAACAGACACATCACGCACACACACCATTCATTTGTTTCTTCTATCT
TGCTATATTAACTCGGTAAGCTCTGGTTTCGACGGCAGAATTTCctccct
gcctattctaattattagtagagtaggcagaaagttggtgtttaaaatct
ttgcttgaaaaggattggtcattgcattgacgtcaaaaaaggacAACTTT
TACCAACTTTAGTTCACAACTGGAATAGGCAGGACAAAAGGTAGGCCGTC
CAAACCAGAGCTAATTCATTACATTGTTTTGTCACCAGTATCGTATCTAT
TCAGTTTATTTCATGATACATCAACTACATACCATCGTAACTTCTACTAA
TGTAATTTATATAAAGCCAATAACAATCTACTTACACTTGACATAGAAAT
AATAAACTAACCTTATATCAGCTTAGACAGCTTATCAGTGATCACGTCAG
GTGACACTCCAACAGATTAATACAATTGTTGATACGAACAACCATAATCT
TTTCAATTATAGCTGTCGCAATAGAATCGGAAGCAGTCGCCGAAGAAACC
GTCGAAGCTGTCTCTGAAGTTGCCGAAGCCGTTGAATGTATGCAAACCAA
TTAACAGTTTAGACGTTTAGAAACTCTCTCTTAGTATGAGAAGTTTATAG
CATACACGTACACCGTTCGTCTGTATTTTCCGTATAAATTGCTCTTTCGT
TATACTGTAGTACCATAGTAATATCTTTAGATCTAGCTATCTTGTCTGCT
TTACTTACCTGCTTTATCGTTGTCATCGCGTGGAATGTAGACGTTTAGAA
ATCTTCTCTTAGAACGAGAAGAAGGGGTCCAACATACACACACAACATTT
GTTATGAACTTGTATTAAGTTCAACTCTAAAGTGTGTTTCAATATTCTTG
TAGCAGTTGTCGAGGAAGTTGCTGCCGAAACTGCAGTTGTTGAGGAAGCT
GCTGCCGAAACTACAGTTGTCGAGGAAGCTGCTGCTGAAACTGAAGCAGT
CATTGAGGAGGCTGCTGCCGAAACTGAAGCAGTCGTCGAGGAAGTTGCTG
CTGAAACTGAAGCTGTTGTCGAGGAGGTAGCTGCTGAAACTGAAGCCATC
GTCGAAGAGGCTGCTGCCGAGACTGAAGCAGTTGTTGAGGAAGTTGTTGC
CGAAACTGAAGCCATCGTCGAAGAGGCTGCTGCTGAAACTGAAGCAGTCG
TCGAGGAAGTTGTTGCAGAAACTGAAGCCATCGTCGAGGAGGCTGCTGCT
GAAACTGAAGCAGTCGTCGAGGAAGTTGTTGCCGAAACTGAAGCCATCGT
CGAAGAGGTTGTTGCTGAAACTGAAGCTGTTGTCGAAGAGGCTGCTGCCG
AGACTGAAGCAGTTGTTGAGGAAGTTGCTGCCGAAACTGAAGCCATCGTC
GAAGAGGCTGCTGCTGAAACTGAAGCTGTCGTCGAGGAAGTTGCTGCCGA
AACTGAAGCCATCGTCGAAGAGGCTGCTGCTGAAACTGAAGCTGTCGTCG
AGGAAGTTGCTGCCGAAACTGAAGCCATCGTCGAAGAGGCTGCTGCTGAA
ACTGAAGCTGTCGTCGAGGAAGTTGCTGCCGAAACTGAAGCCATCGTCGA
AGAGGTTGTTGCTGAAGCTGAAGCAGTCGTCGAGGAAGTTGTTGCTGAAA
CTGAAGCAGTCATCGAAGAGGCTGCTGCTGAAACTGAAACAATTATTGAG
GAAGTTGCTGTCGAAGCTGAAGTAGTCGTCGAGGAGGTAGCTGCTGCTGA
AACTGAAGCTGTTGTTGAGGAGGCTGCTGCTGAAACTGAAGCAGTCATCG
AGGAAGTTGCCGCTGAGACTGAAGCAGTTGTCGAGGAAGTCGCTGCCGAA
ACTGAAGCGGTTGTCGAGGAGGCTGCCGCTGAAACTGAAGCAGTTGTCGA
GGAGGCTGCCGCTGAAACTGAAGCAGTTGTCGAGGAACTCACTGCCGAAA
CTGAAGCGGTTGTCGAGGAGGCTGCCGCTGAAACTGAAGCAGTTGTCGAG
GAGGCTGCTGCTGAAACTGAAGCAGTCGTCGAGGAAGTTGTTGCTGAGAC
TGAAGCAGTCGTCGAAAAAGTTACTGCAGATTCTGAAGCAGTCATCGAAG
AGGCAGCTACTGAAACTGAAACAGTCGTCGATGAGGTAGCCCCTGAAGTA
GAAGCAGTCGCTGAAGAGGCAGCCCCTGAAGTAGAAGCAGTCGCTGAAGA
GGCAGCCCCTGAAGTAGAAGCCGTCGCTGAGGAGGCAGCCCCTGAAGTAG
AAGCAGTCGCTGAGGAGGCAGCCCCTGAAGTAGAAGCAGTCGTTGAGGAG
GCAGCCCCTGAAGTAGAAGCAGTCGCTGAGGAGGCAGCCCCTGAAGTAGA
ATCAGTTGTTGAGGAGGTAGCTCCTGAGCCAGAGGTTGTAGCAGAAGAGG
CATCTGCTGGACCAGAGAGTATGTTGTTAATGCTCTTAAATTTTTACGCC
CTTAATAGTTgtctttggtttgattttcCCAGCAATCTCGAGTTCGTTAT
CCTCTGATCTTTAATTAAGTGCGTCTGAACTTTGCTTTTCTTTCTCTTCC
CTTAGAAAAGGGCAAATGAATTGAACTTTAGAAACTGCTGCTTTCTTCAT
CTCCTGCGATTTTCTGAGTCCTTTTCCTAGCTCTACTTTTACTATCCACT
AATACTGAATACTGATAATAATTTTCTGTAATTTATTTGTCCTTTTCTAG
AACCAGAGCCGAAAACTCTTTGGGAAAAGATTAAACGaatcttcaatttt
taagtCGTCGGCAAACTCAGTTGACGGCGTAGTAGTGAAGTATGTCGTGT
TTTATCGTTATATTTAACCTTAGATTAGATTTTCAACTTGGTTGGACATG
AATAATTCTAACGAGGGAAATCTGTATATTATTTCAACGGTTTCTTATAT
CAACTTGGCTACTTCTTCTCTTGCAATTTTAAGGGTGTCAATATTGtctg
ttttttcttttcaaataacgTCATTCATCGTCAATTtacctttataaacc
ctggaccaagctatttCCACCatatttgatcggagtttttatgaaagtgg
tacccgcaaagaattTATAGTTAAGATTTTGTTTGAcaacaaacggcgct
acatcacttGCGTGCAAgcgaaagtagatctagcgctctcgatgcgggta
ccactttcaaaaatattccgaTCAAAATATGTTGGTTGGCCGGGACTGAG
AAACTGCCTCCGGGGTTTATGTAAAGCTCAATCAACTATGAATTATGAAT
CATTTCTAAGTTCAACGTATTCTGATAATGTAATATCAAGTCTCAAATTG
AATGCAATCCCTCTGTATCTTTCAATGATCGGAGGGCTTCTTTGAGTCAG
TAAcgccatagtataagaaagccgcggctggaatgatgacgctattgttt
ttgtcgttAATGGATGTTTTATCTGTGTCTCCGTGATTTATAAGAACTAA
ATCTAAGCTAGCAAAATCTTCAACCTGAAAAGTGTTTATAAAATTCAATT
AAAGAATAATTACTTTTCAAGTCTTAGATTTTTCTCACTGCCCTCTAATT
AGCTTGTTcgaagtatattcttataaattccagataaaattttaaaaatt
taggaCCAAATAACGCACATTTTAAtacaagaactaattttcaaatgtta
aactttGAATGCTTGCCGTCATCTCAATACTGTTGATTTTCGAATGAAGT
TTTCAAGAATACTGCTTgaatattgattttttaataTCAGTAAGAATTGT
TCAAAATAATCAGGAAGGCACTTCGAAGCACttaattttcttcaagttct
taaagcacTGACATTCTGTTCGCTCTAATATTTTAAACCGAAactctttt
cttttactttgatattatgaatgcgtgaattatcaagagatttgtgttta
tgagcaaaattacgTCTTACGAGGGACTTTGTTAAAAGTCAGATTAAATT
GACAATGGAAATTGTCATtgaaccataaaaaaattcgttcttacgacata
gatagaacaacagaaattcaactgaactcattccagccgcggctttctta
tactatggtaacGCTTTTCAGGTAATTAACGCTCATTACCATATCTAGGC
TTTGCTTACTTTTAGGTGTACACACTttcacgagcagaaactttcgcgag
gtcgaaaaatcgtaacatttactttcgcgaatttgacaaaaaaaattttc
gttagcataaactttcgcgaatgaggTATATTTTTAGTAGAAAATTCAAG
TTTTCGGTGCATAAAACCAGTTTTTGATGGACTTTCGCATAATATCTACA
CTAAATTTTATCCTTGTTATCATCAAGACGTTTACTTTCGCGACAAgggc
taaaattcgcgaaaatcgtttctgctcgcgaaagtttgtacgcctaataA
AGTAGTTGCCTGTCAACAGTAATATTGTTAAAAGGTTTTTAGGCCGCTAA
TGATAAAGAAAATTGTGTGAGGTATTTCAAATGACCTGCAACTTATATAG
CTCGCCTATAACATATCACACAAGAATAACTGTGCCGTAGTGTACTCTTC
TGACTTTTTCACTCAGGTTTATTTATCTCAATTTCAAAAGTATTTCTAAT
CTTTCTACTAGTTTTGCCTTAAAATGGAAAGAcgtgaaaaattttaaagg
taTAATGAGATATTTGGCCTCCAGATATTTTCCAAAGTCCTGAGAGAAAC
AACCGAAAACTTTTCAGTGCGGATAAGCACAATATAAAAACATATCTGAT
TAtacctttaatttttttaacgacTTTCCATTTCAAAGCAAATCTTAAGG
TATTAAGGTATGTTTACACCTTTCTTAACACAATATTTTTAATTGGTCAT
ATCTACGTCAAAAGTATTTtctgacaaaaaaatcaaaaaaaaggtgtaca
cataccttactcttaggtgccaaataaacagggggagttgaaagattttc
aacattttaataaacgggggtgacgtaattgccggggggttggaaattgt
acttctgaaaacccaaaaataaggtaaatataggctaaaatcaggctatt
tagagcaaaataagggaccttctctttgacagcttaaaatattcttaaaa
attaataaacgggggggtcctaattaGTTCCGGGGGGTTAGAAACttctc
gaaaaattaacaagcggggggggggtttatAAGAAAAGAAAGGCTCAAAA
TAGTTGGAGCTAAAATTAAGAGCTGATAGTAGTACGCGCTCATTATCATA
ATAACTACttatcatttttctttgtttctcgTTTCCCCAGGTAGAGTAGA
CATAGGAGCCAAACAGCCATCGCCAGCAGCTGAACCATCCATTCCACAAG
ATCAAGCAGCATTCGACGCGTACAATGCAAATTACAAATGTCCGGAATAT
TACAAACACGATGAATTCGCGTTTTACGATATCGAAAACGATATGCAATC
GAGTCGAATCGAGCAACCTAGTGCTTTATAATAGTTGTTGttttaacaaa
gaaaattggtgtttttttagattttgttgCTAACTTGGAACTTGTTCATA
CTATTGAAATGTAGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036099-exon-sc0001413-1491911889:8151..8252 | TCONS_00036099-exon-sc0001413-1491911889:8151..8252 | Clytia hemisphaerica | exon |
| TCONS_00036099-exon-sc0001413-1510915933:8151..8252 | TCONS_00036099-exon-sc0001413-1510915933:8151..8252 | Clytia hemisphaerica | exon |
| TCONS_00036099-exon-sc0001413-1575043694:8151..8252 | TCONS_00036099-exon-sc0001413-1575043694:8151..8252 | Clytia hemisphaerica | exon |
| TCONS_00036099-exon-sc0001413-1491911889:8959..9034 | TCONS_00036099-exon-sc0001413-1491911889:8959..9034 | Clytia hemisphaerica | exon |
| TCONS_00036099-exon-sc0001413-1510915933:8959..9034 | TCONS_00036099-exon-sc0001413-1510915933:8959..9034 | Clytia hemisphaerica | exon |
| TCONS_00036099-exon-sc0001413-1575043694:8959..9034 | TCONS_00036099-exon-sc0001413-1575043694:8959..9034 | Clytia hemisphaerica | exon |
| TCONS_00036099-exon-sc0001413-1491911889:15091..15367 | TCONS_00036099-exon-sc0001413-1491911889:15091..15367 | Clytia hemisphaerica | exon |
| TCONS_00036099-exon-sc0001413-1510915933:15091..15367 | TCONS_00036099-exon-sc0001413-1510915933:15091..15367 | Clytia hemisphaerica | exon |
| TCONS_00036099-exon-sc0001413-1575043694:15091..15367 | TCONS_00036099-exon-sc0001413-1575043694:15091..15367 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001413 | supercontig | sc0001413:8151..15367 + |
Blast
The following BLAST results are available for this feature:
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