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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036094 ID=TCONS_00036094|Name=TCONS_00036094|organism=Clytia hemisphaerica|type=transcript|length=450bp
ATCTTTCAGTGCTAATTAACAAAATATCTGTACTATAACATCATCTGCTA
AACAtcaattgcaatgtcttccacacAACTCATCAGATCTCTTCGACAAC
CATTGCAACAATGTGTGTACAGAACCACTGTTCGATCTCTGTCAACAGCA
AGAACTGTAGCCTGCAAAGTCACCGATAAAGAACCAGAGCCGAAAACTCT
TTGGGAAAAGATTAAACGaatcttcaatttttaagtCGTCGGCAAACTCA
GTTGACGGCGTAGTAGTGAAGTATGTCGTGTTTTATCGTTATATTTAACC
TTAGATTAGATTTTCAACTTGGTTGGACATGAATAATTCTAACGAGGGAA
ATCTGTATATTATTTCAACGGTTTCTTATATCAACTTGGCTACTTCTTCT
CTTGCAATTTTAAGGGTGTCAATATTGtctgttttttcttttcaaataac Run BLAST on NCBI transcript from alignment at sc0001413:8148..12769+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036094 ID=TCONS_00036094|Name=TCONS_00036094|organism=Clytia hemisphaerica|type=transcript|length=4622bp|location=Sequence derived from alignment at sc0001413:8148..12769+ (Clytia hemisphaerica)
ATCTTTCAGTGCTAATTAACAAAATATCTGTACTATAACATCATCTGCTA
AACAtcaattgcaatgtcttccacacAACTCATCAGATCTCTTCGACAAC
CATTGGTATGTATAAattattgttttaatttttattcttAACTGATTGAA
ACACAttcccatttttttttttctttgtaccAATCCGNATTTTTATTCTT
AACTGATTGAAACACAttcccattttttttttttgctttgataTACAGTA
CCAATACgtggcttttttttaatttaaagatACTGTCTGTTGGCTATTCT
GCTATGATTTTCCTCTAAATTCTTTAAGAAAACACAACTTAGCAGAATTT
AGTTGAATGATGCTTCTGTGAAGCCAATAGTCAAACATTGACATTATGTA
GTAACGTTGCTATTTTGGGTGTGAGGATCTTAGATAGTGTGGATGTGAAG
CTTTGTTGATTGTTGTAGAGTCTTCGAGTTTGAATAACAGTGACCTTATG
TACATTTTTCCTGTTGCTTTAAGTTGCTTTAAGTAAGCCTATGTTCATTG
AACAGTGGAGTCTATTTACTCGGACCTTTATAACTTGAATGTCTCCTTGA
CTCGAATGAggtttatggtcccttcagttaacaatgccttctAAACCTTA
TTCTATGACTCAACATtttcttaactcaaacaaattaGTGTTCGAGTTAG
GGAGACCCAAACCGTAAAACCCATTTGTTTTTTTCCTGTTTGGCAATATC
AGATTACACCATACAAGAAATATTTGCACAACTTAAATCTATATATTGTT
TTCTCTTCTAGCAACAATGTGTGTACAGAACCACTGTTCGATCTCTGTCA
ACAGCAAGAACTGTAGCCTGCAAAGTCACCGATAAAGGTATGTTTTGAAT
GTTgtctaaaataccaaaattaaaGATACTGTAgtattacttttattttt
tatttttaaactttacTGTGTATCTAGTTCTAGCTAAACTATATTCTTTA
AATAATGCGCACTGTTACCAATAACTTATTCTTCTTTTAGCATCTACACC
AGTAGTTGAAGTTGCTGCTGAAAACGCGAAATGTatgatttgttgttttt
aacTGTTGTTACAGCTCTTTAATCTGTTACTTTAGTTTTCCCATGTTTAC
AAGATTCCTCTGTTCATTGGAGAAACTCACCCAGCCCTAGTTTTCGCTTT
ACAAGGTGTCACTTACACCCCATACCAGTTGACATCCATTGTATATTAGT
ATGAGTAGAGGTGGATGGATGATCACCAATGAAAAGTGCTCTAAAAAAAG
GAACAATATAATAATATCCATTGTATAGCGTAGTTAGCCTTTTTAAGATG
CCCAAATGCAGAGAAGTGTCGTTCTGGAGGGAATTGATTGTTGGATATGG
CTGCCACACATTGTTTGGAGTGATTCTCGAGCTGTCTAAGGCTCTTAGGC
CAAAGTAGGGTTCCTGGTTTGAGATAACTGGATTATCCACTCAAAACATC
GAAGATCAAACTGTTCACTTCATATGTTTATTCTCTTCTTTTAGCTACAA
CGCCTATAGTGGAGGCTGTAGCAGAGGCAATTGCTGATCCCACGCCAGCG
GAGTGTAAGATGTGTCTTCTTTTCGACGCTTAGGTCGTCCCTCTGTTAGA
ATCAGAGAACAGACACATCACGCACACACACCATTCATTTGTTTCTTCTA
TCTTGCTATATTAACTCGGTAAGCTCTGGTTTCGACGGCAGAATTTCctc
cctgcctattctaattattagtagagtaggcagaaagttggtgtttaaaa
tctttgcttgaaaaggattggtcattgcattgacgtcaaaaaaggacAAC
TTTTACCAACTTTAGTTCACAACTGGAATAGGCAGGACAAAAGGTAGGCC
GTCCAAACCAGAGCTAATTCATTACATTGTTTTGTCACCAGTATCGTATC
TATTCAGTTTATTTCATGATACATCAACTACATACCATCGTAACTTCTAC
TAATGTAATTTATATAAAGCCAATAACAATCTACTTACACTTGACATAGA
AATAATAAACTAACCTTATATCAGCTTAGACAGCTTATCAGTGATCACGT
CAGGTGACACTCCAACAGATTAATACAATTGTTGATACGAACAACCATAA
TCTTTTCAATTATAGCTGTCGCAATAGAATCGGAAGCAGTCGCCGAAGAA
ACCGTCGAAGCTGTCTCTGAAGTTGCCGAAGCCGTTGAATGTATGCAAAC
CAATTAACAGTTTAGACGTTTAGAAACTCTCTCTTAGTATGAGAAGTTTA
TAGCATACACGTACACCGTTCGTCTGTATTTTCCGTATAAATTGCTCTTT
CGTTATACTGTAGTACCATAGTAATATCTTTAGATCTAGCTATCTTGTCT
GCTTTACTTACCTGCTTTATCGTTGTCATCGCGTGGAATGTAGACGTTTA
GAAATCTTCTCTTAGAACGAGAAGAAGGGGTCCAACATACACACACAACA
TTTGTTATGAACTTGTATTAAGTTCAACTCTAAAGTGTGTTTCAATATTC
TTGTAGCAGTTGTCGAGGAAGTTGCTGCCGAAACTGCAGTTGTTGAGGAA
GCTGCTGCCGAAACTACAGTTGTCGAGGAAGCTGCTGCTGAAACTGAAGC
AGTCATTGAGGAGGCTGCTGCCGAAACTGAAGCAGTCGTCGAGGAAGTTG
CTGCTGAAACTGAAGCTGTTGTCGAGGAGGTAGCTGCTGAAACTGAAGCC
ATCGTCGAAGAGGCTGCTGCCGAGACTGAAGCAGTTGTTGAGGAAGTTGT
TGCCGAAACTGAAGCCATCGTCGAAGAGGCTGCTGCTGAAACTGAAGCAG
TCGTCGAGGAAGTTGTTGCAGAAACTGAAGCCATCGTCGAGGAGGCTGCT
GCTGAAACTGAAGCAGTCGTCGAGGAAGTTGTTGCCGAAACTGAAGCCAT
CGTCGAAGAGGTTGTTGCTGAAACTGAAGCTGTTGTCGAAGAGGCTGCTG
CCGAGACTGAAGCAGTTGTTGAGGAAGTTGCTGCCGAAACTGAAGCCATC
GTCGAAGAGGCTGCTGCTGAAACTGAAGCTGTCGTCGAGGAAGTTGCTGC
CGAAACTGAAGCCATCGTCGAAGAGGCTGCTGCTGAAACTGAAGCTGTCG
TCGAGGAAGTTGCTGCCGAAACTGAAGCCATCGTCGAAGAGGCTGCTGCT
GAAACTGAAGCTGTCGTCGAGGAAGTTGCTGCCGAAACTGAAGCCATCGT
CGAAGAGGTTGTTGCTGAAGCTGAAGCAGTCGTCGAGGAAGTTGTTGCTG
AAACTGAAGCAGTCATCGAAGAGGCTGCTGCTGAAACTGAAACAATTATT
GAGGAAGTTGCTGTCGAAGCTGAAGTAGTCGTCGAGGAGGTAGCTGCTGC
TGAAACTGAAGCTGTTGTTGAGGAGGCTGCTGCTGAAACTGAAGCAGTCA
TCGAGGAAGTTGCCGCTGAGACTGAAGCAGTTGTCGAGGAAGTCGCTGCC
GAAACTGAAGCGGTTGTCGAGGAGGCTGCCGCTGAAACTGAAGCAGTTGT
CGAGGAGGCTGCCGCTGAAACTGAAGCAGTTGTCGAGGAACTCACTGCCG
AAACTGAAGCGGTTGTCGAGGAGGCTGCCGCTGAAACTGAAGCAGTTGTC
GAGGAGGCTGCTGCTGAAACTGAAGCAGTCGTCGAGGAAGTTGTTGCTGA
GACTGAAGCAGTCGTCGAAAAAGTTACTGCAGATTCTGAAGCAGTCATCG
AAGAGGCAGCTACTGAAACTGAAACAGTCGTCGATGAGGTAGCCCCTGAA
GTAGAAGCAGTCGCTGAAGAGGCAGCCCCTGAAGTAGAAGCAGTCGCTGA
AGAGGCAGCCCCTGAAGTAGAAGCCGTCGCTGAGGAGGCAGCCCCTGAAG
TAGAAGCAGTCGCTGAGGAGGCAGCCCCTGAAGTAGAAGCAGTCGTTGAG
GAGGCAGCCCCTGAAGTAGAAGCAGTCGCTGAGGAGGCAGCCCCTGAAGT
AGAATCAGTTGTTGAGGAGGTAGCTCCTGAGCCAGAGGTTGTAGCAGAAG
AGGCATCTGCTGGACCAGAGAGTATGTTGTTAATGCTCTTAAATTTTTAC
GCCCTTAATAGTTgtctttggtttgattttcCCAGCAATCTCGAGTTCGT
TATCCTCTGATCTTTAATTAAGTGCGTCTGAACTTTGCTTTTCTTTCTCT
TCCCTTAGAAAAGGGCAAATGAATTGAACTTTAGAAACTGCTGCTTTCTT
CATCTCCTGCGATTTTCTGAGTCCTTTTCCTAGCTCTACTTTTACTATCC
ACTAATACTGAATACTGATAATAATTTTCTGTAATTTATTTGTCCTTTTC
TAGAACCAGAGCCGAAAACTCTTTGGGAAAAGATTAAACGaatcttcaat
ttttaagtCGTCGGCAAACTCAGTTGACGGCGTAGTAGTGAAGTATGTCG
TGTTTTATCGTTATATTTAACCTTAGATTAGATTTTCAACTTGGTTGGAC
ATGAATAATTCTAACGAGGGAAATCTGTATATTATTTCAACGGTTTCTTA
TATCAACTTGGCTACTTCTTCTCTTGCAATTTTAAGGGTGTCAATATTGt
ctgttttttcttttcaaataac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036094-exon-sc0001413-1491911889:8148..8252 | TCONS_00036094-exon-sc0001413-1491911889:8148..8252 | Clytia hemisphaerica | exon |
| TCONS_00036094-exon-sc0001413-1510915933:8148..8252 | TCONS_00036094-exon-sc0001413-1510915933:8148..8252 | Clytia hemisphaerica | exon |
| TCONS_00036094-exon-sc0001413-1575043694:8148..8252 | TCONS_00036094-exon-sc0001413-1575043694:8148..8252 | Clytia hemisphaerica | exon |
| TCONS_00036094-exon-sc0001413-1491911889:8959..9034 | TCONS_00036094-exon-sc0001413-1491911889:8959..9034 | Clytia hemisphaerica | exon |
| TCONS_00036094-exon-sc0001413-1510915933:8959..9034 | TCONS_00036094-exon-sc0001413-1510915933:8959..9034 | Clytia hemisphaerica | exon |
| TCONS_00036094-exon-sc0001413-1575043694:8959..9034 | TCONS_00036094-exon-sc0001413-1575043694:8959..9034 | Clytia hemisphaerica | exon |
| TCONS_00036094-exon-sc0001413-1491911889:12501..12769 | TCONS_00036094-exon-sc0001413-1491911889:12501..12769 | Clytia hemisphaerica | exon |
| TCONS_00036094-exon-sc0001413-1510915933:12501..12769 | TCONS_00036094-exon-sc0001413-1510915933:12501..12769 | Clytia hemisphaerica | exon |
| TCONS_00036094-exon-sc0001413-1575043694:12501..12769 | TCONS_00036094-exon-sc0001413-1575043694:12501..12769 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001413 | supercontig | sc0001413:8148..12769 + |
Blast
The following BLAST results are available for this feature:
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