TCONS_00036093 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036093
Unique NameTCONS_00036093
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1749

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036093 ID=TCONS_00036093|Name=TCONS_00036093|organism=Clytia hemisphaerica|type=transcript|length=1749bp
ATCTTTCAGTGCTAATTAACAAAATATCTGTACTATAACATCATCTGCTA
AACAtcaattgcaatgtcttccacacAACTCATCAGATCTCTTCGACAAC
CATTGCAACAATGTGTGTACAGAACCACTGTTCGATCTCTGTCAACAGCA
AGAACTGTAGCCTGCAAAGTCACCGATAAAGCATCTACACCAGTAGTTGA
AGTTGCTGCTGAAAACGCGAAATCTACAACGCCTATAGTGGAGGCTGTAG
CAGAGGCAATTGCTGATCCCACGCCAGCGGAGTCTGTCGCAATAGAATCG
GAAGCAGTCGCCGAAGAAACCGTCGAAGCTGTCTCTGAAGTTGCCGAAGC
CGTTGAATCAGTTGTCGAGGAAGTTGCTGCCGAAACTGCAGTTGTTGAGG
AAGCTGCTGCCGAAACTACAGTTGTCGAGGAAGCTGCTGCTGAAACTGAA
GCAGTCGTCGAGGAAGTTGTTGCAGAAACTGAAGCCATCGTCGAGGAGGC
TGCTGCTGAAACTGAAGCAGTCGTCGAGGAAGTTGTTGCCGAAACTGAAG
CCATCGTCGAAGAGGCTGCTGCCGAGACTGAAGCAGTTGTTGAGGAAGTT
GCTGCCGAAACTGAAGCCATCGTCGAAGAGGCTGCTGCTGAAACTGAAGC
TGTCGTCGAGGAAGTTGCTGCCGAAACTGAAGCCATCGTCGAAGAGGCTG
CTGCTGAAACTGAAGCTGTCGTCGAGGAAGTTGCTGCCGAAACTGAAGCC
ATCGTCGAAGAGGCTGCTGCTGAAACTGAAGCTGTCGTCGAGGAAGTTGC
TGCCGAAACTGAAGCCATCGTCGAAGAGGTTGTTGCTGAAGCTGAAGCAG
TCGTCGAGGAAGTTGTTGCTGAAACTGAAGCAGTCATCGAAGAGGCTGCT
GCTGAAACTGAAACAATTATTGAGGAAGTTGCTGTCGAAGCTGAAGTAGT
CGTCGAGGAGGTAGCTGCTGCTGCTGAAACTGAAGCAGTCATCGAGGAAG
TTGCCGCTGAGACTGAAGCAGTTGTCGAGGAAGTCGCTGCCGAAACTGAA
GCGGTTGTCGAGGAGGCTGCCGCTGAAACTGAAGCAGTTGTCGAGGAACT
CACTGCCGAAACTGAAGCGGTTGTCGAGGAGGCTGCCGCTGAAACTGAAG
CAGTTGTCGAGGAGGCTGCTGCTGAAACTGAAGCAGTCGTCGAGGAAGTT
GTTGCTGAGACTGAAGCAGTCGTCGAAAAAGTTACTGCAGATTCTGAAGC
AGTCATCGAAGAGGCAGCTACTGAAACTGAAACAGTCGTCGATGAGGTAG
CCCCTGAAGTAGAAGCAGTCGCTGAAGAGGCAGCCCCTGAAGTAGAAGCA
GTCGTTGAGGAGGCAGCCCCTGAAGTAGAAGCAGTCGCTGAGGAGGCAGC
CCCTGAAGTAGAATCAGTTGTTGAGGAGGTAGCTCCTGAGCCAGAGGTTG
TAGCAGAAGAGGCATCTGCTGGACCAGAGAAACCAGAGCCGAAAACTCTT
TGGGAAAAGATTAAACGaatcttcaatttttaagtCGTCGGCAAACTCAG
TTGACGGCGTAGTAGTGAAGTATGTCGTGTTTTATCGTTATATTTAACCT
TAGATTAGATTTTCAACTTGGTTGGACATGAATAATTCTAACGAGGGAAA
TCTGTATATTATTTCAACGGTTTCTTATATCAACTTGGCTACTTCTTCTC
TTGCAATTTTAAGGGTGTCAATATTGtctgttttttcttttcaaataac
Run BLAST on NCBI

transcript from alignment at sc0001413:8148..12769+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036093 ID=TCONS_00036093|Name=TCONS_00036093|organism=Clytia hemisphaerica|type=transcript|length=4622bp|location=Sequence derived from alignment at sc0001413:8148..12769+ (Clytia hemisphaerica)
ATCTTTCAGTGCTAATTAACAAAATATCTGTACTATAACATCATCTGCTA
AACAtcaattgcaatgtcttccacacAACTCATCAGATCTCTTCGACAAC
CATTGGTATGTATAAattattgttttaatttttattcttAACTGATTGAA
ACACAttcccatttttttttttctttgtaccAATCCGNATTTTTATTCTT
AACTGATTGAAACACAttcccattttttttttttgctttgataTACAGTA
CCAATACgtggcttttttttaatttaaagatACTGTCTGTTGGCTATTCT
GCTATGATTTTCCTCTAAATTCTTTAAGAAAACACAACTTAGCAGAATTT
AGTTGAATGATGCTTCTGTGAAGCCAATAGTCAAACATTGACATTATGTA
GTAACGTTGCTATTTTGGGTGTGAGGATCTTAGATAGTGTGGATGTGAAG
CTTTGTTGATTGTTGTAGAGTCTTCGAGTTTGAATAACAGTGACCTTATG
TACATTTTTCCTGTTGCTTTAAGTTGCTTTAAGTAAGCCTATGTTCATTG
AACAGTGGAGTCTATTTACTCGGACCTTTATAACTTGAATGTCTCCTTGA
CTCGAATGAggtttatggtcccttcagttaacaatgccttctAAACCTTA
TTCTATGACTCAACATtttcttaactcaaacaaattaGTGTTCGAGTTAG
GGAGACCCAAACCGTAAAACCCATTTGTTTTTTTCCTGTTTGGCAATATC
AGATTACACCATACAAGAAATATTTGCACAACTTAAATCTATATATTGTT
TTCTCTTCTAGCAACAATGTGTGTACAGAACCACTGTTCGATCTCTGTCA
ACAGCAAGAACTGTAGCCTGCAAAGTCACCGATAAAGGTATGTTTTGAAT
GTTgtctaaaataccaaaattaaaGATACTGTAgtattacttttattttt
tatttttaaactttacTGTGTATCTAGTTCTAGCTAAACTATATTCTTTA
AATAATGCGCACTGTTACCAATAACTTATTCTTCTTTTAGCATCTACACC
AGTAGTTGAAGTTGCTGCTGAAAACGCGAAATGTatgatttgttgttttt
aacTGTTGTTACAGCTCTTTAATCTGTTACTTTAGTTTTCCCATGTTTAC
AAGATTCCTCTGTTCATTGGAGAAACTCACCCAGCCCTAGTTTTCGCTTT
ACAAGGTGTCACTTACACCCCATACCAGTTGACATCCATTGTATATTAGT
ATGAGTAGAGGTGGATGGATGATCACCAATGAAAAGTGCTCTAAAAAAAG
GAACAATATAATAATATCCATTGTATAGCGTAGTTAGCCTTTTTAAGATG
CCCAAATGCAGAGAAGTGTCGTTCTGGAGGGAATTGATTGTTGGATATGG
CTGCCACACATTGTTTGGAGTGATTCTCGAGCTGTCTAAGGCTCTTAGGC
CAAAGTAGGGTTCCTGGTTTGAGATAACTGGATTATCCACTCAAAACATC
GAAGATCAAACTGTTCACTTCATATGTTTATTCTCTTCTTTTAGCTACAA
CGCCTATAGTGGAGGCTGTAGCAGAGGCAATTGCTGATCCCACGCCAGCG
GAGTGTAAGATGTGTCTTCTTTTCGACGCTTAGGTCGTCCCTCTGTTAGA
ATCAGAGAACAGACACATCACGCACACACACCATTCATTTGTTTCTTCTA
TCTTGCTATATTAACTCGGTAAGCTCTGGTTTCGACGGCAGAATTTCctc
cctgcctattctaattattagtagagtaggcagaaagttggtgtttaaaa
tctttgcttgaaaaggattggtcattgcattgacgtcaaaaaaggacAAC
TTTTACCAACTTTAGTTCACAACTGGAATAGGCAGGACAAAAGGTAGGCC
GTCCAAACCAGAGCTAATTCATTACATTGTTTTGTCACCAGTATCGTATC
TATTCAGTTTATTTCATGATACATCAACTACATACCATCGTAACTTCTAC
TAATGTAATTTATATAAAGCCAATAACAATCTACTTACACTTGACATAGA
AATAATAAACTAACCTTATATCAGCTTAGACAGCTTATCAGTGATCACGT
CAGGTGACACTCCAACAGATTAATACAATTGTTGATACGAACAACCATAA
TCTTTTCAATTATAGCTGTCGCAATAGAATCGGAAGCAGTCGCCGAAGAA
ACCGTCGAAGCTGTCTCTGAAGTTGCCGAAGCCGTTGAATGTATGCAAAC
CAATTAACAGTTTAGACGTTTAGAAACTCTCTCTTAGTATGAGAAGTTTA
TAGCATACACGTACACCGTTCGTCTGTATTTTCCGTATAAATTGCTCTTT
CGTTATACTGTAGTACCATAGTAATATCTTTAGATCTAGCTATCTTGTCT
GCTTTACTTACCTGCTTTATCGTTGTCATCGCGTGGAATGTAGACGTTTA
GAAATCTTCTCTTAGAACGAGAAGAAGGGGTCCAACATACACACACAACA
TTTGTTATGAACTTGTATTAAGTTCAACTCTAAAGTGTGTTTCAATATTC
TTGTAGCAGTTGTCGAGGAAGTTGCTGCCGAAACTGCAGTTGTTGAGGAA
GCTGCTGCCGAAACTACAGTTGTCGAGGAAGCTGCTGCTGAAACTGAAGC
AGTCATTGAGGAGGCTGCTGCCGAAACTGAAGCAGTCGTCGAGGAAGTTG
CTGCTGAAACTGAAGCTGTTGTCGAGGAGGTAGCTGCTGAAACTGAAGCC
ATCGTCGAAGAGGCTGCTGCCGAGACTGAAGCAGTTGTTGAGGAAGTTGT
TGCCGAAACTGAAGCCATCGTCGAAGAGGCTGCTGCTGAAACTGAAGCAG
TCGTCGAGGAAGTTGTTGCAGAAACTGAAGCCATCGTCGAGGAGGCTGCT
GCTGAAACTGAAGCAGTCGTCGAGGAAGTTGTTGCCGAAACTGAAGCCAT
CGTCGAAGAGGTTGTTGCTGAAACTGAAGCTGTTGTCGAAGAGGCTGCTG
CCGAGACTGAAGCAGTTGTTGAGGAAGTTGCTGCCGAAACTGAAGCCATC
GTCGAAGAGGCTGCTGCTGAAACTGAAGCTGTCGTCGAGGAAGTTGCTGC
CGAAACTGAAGCCATCGTCGAAGAGGCTGCTGCTGAAACTGAAGCTGTCG
TCGAGGAAGTTGCTGCCGAAACTGAAGCCATCGTCGAAGAGGCTGCTGCT
GAAACTGAAGCTGTCGTCGAGGAAGTTGCTGCCGAAACTGAAGCCATCGT
CGAAGAGGTTGTTGCTGAAGCTGAAGCAGTCGTCGAGGAAGTTGTTGCTG
AAACTGAAGCAGTCATCGAAGAGGCTGCTGCTGAAACTGAAACAATTATT
GAGGAAGTTGCTGTCGAAGCTGAAGTAGTCGTCGAGGAGGTAGCTGCTGC
TGAAACTGAAGCTGTTGTTGAGGAGGCTGCTGCTGAAACTGAAGCAGTCA
TCGAGGAAGTTGCCGCTGAGACTGAAGCAGTTGTCGAGGAAGTCGCTGCC
GAAACTGAAGCGGTTGTCGAGGAGGCTGCCGCTGAAACTGAAGCAGTTGT
CGAGGAGGCTGCCGCTGAAACTGAAGCAGTTGTCGAGGAACTCACTGCCG
AAACTGAAGCGGTTGTCGAGGAGGCTGCCGCTGAAACTGAAGCAGTTGTC
GAGGAGGCTGCTGCTGAAACTGAAGCAGTCGTCGAGGAAGTTGTTGCTGA
GACTGAAGCAGTCGTCGAAAAAGTTACTGCAGATTCTGAAGCAGTCATCG
AAGAGGCAGCTACTGAAACTGAAACAGTCGTCGATGAGGTAGCCCCTGAA
GTAGAAGCAGTCGCTGAAGAGGCAGCCCCTGAAGTAGAAGCAGTCGCTGA
AGAGGCAGCCCCTGAAGTAGAAGCCGTCGCTGAGGAGGCAGCCCCTGAAG
TAGAAGCAGTCGCTGAGGAGGCAGCCCCTGAAGTAGAAGCAGTCGTTGAG
GAGGCAGCCCCTGAAGTAGAAGCAGTCGCTGAGGAGGCAGCCCCTGAAGT
AGAATCAGTTGTTGAGGAGGTAGCTCCTGAGCCAGAGGTTGTAGCAGAAG
AGGCATCTGCTGGACCAGAGAGTATGTTGTTAATGCTCTTAAATTTTTAC
GCCCTTAATAGTTgtctttggtttgattttcCCAGCAATCTCGAGTTCGT
TATCCTCTGATCTTTAATTAAGTGCGTCTGAACTTTGCTTTTCTTTCTCT
TCCCTTAGAAAAGGGCAAATGAATTGAACTTTAGAAACTGCTGCTTTCTT
CATCTCCTGCGATTTTCTGAGTCCTTTTCCTAGCTCTACTTTTACTATCC
ACTAATACTGAATACTGATAATAATTTTCTGTAATTTATTTGTCCTTTTC
TAGAACCAGAGCCGAAAACTCTTTGGGAAAAGATTAAACGaatcttcaat
ttttaagtCGTCGGCAAACTCAGTTGACGGCGTAGTAGTGAAGTATGTCG
TGTTTTATCGTTATATTTAACCTTAGATTAGATTTTCAACTTGGTTGGAC
ATGAATAATTCTAACGAGGGAAATCTGTATATTATTTCAACGGTTTCTTA
TATCAACTTGGCTACTTCTTCTCTTGCAATTTTAAGGGTGTCAATATTGt
ctgttttttcttttcaaataac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021221XLOC_021221Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036093-exon-sc0001413-1491911889:8148..8252TCONS_00036093-exon-sc0001413-1491911889:8148..8252Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1510915933:8148..8252TCONS_00036093-exon-sc0001413-1510915933:8148..8252Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1575043694:8148..8252TCONS_00036093-exon-sc0001413-1575043694:8148..8252Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1491911889:8959..9034TCONS_00036093-exon-sc0001413-1491911889:8959..9034Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1510915933:8959..9034TCONS_00036093-exon-sc0001413-1510915933:8959..9034Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1575043694:8959..9034TCONS_00036093-exon-sc0001413-1575043694:8959..9034Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1491911889:9188..9229TCONS_00036093-exon-sc0001413-1491911889:9188..9229Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1510915933:9188..9229TCONS_00036093-exon-sc0001413-1510915933:9188..9229Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1575043694:9188..9229TCONS_00036093-exon-sc0001413-1575043694:9188..9229Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1491911889:9692..9751TCONS_00036093-exon-sc0001413-1491911889:9692..9751Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1510915933:9692..9751TCONS_00036093-exon-sc0001413-1510915933:9692..9751Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1575043694:9692..9751TCONS_00036093-exon-sc0001413-1575043694:9692..9751Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1491911889:10313..10387TCONS_00036093-exon-sc0001413-1491911889:10313..10387Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1510915933:10313..10387TCONS_00036093-exon-sc0001413-1510915933:10313..10387Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1575043694:10313..10387TCONS_00036093-exon-sc0001413-1575043694:10313..10387Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1491911889:10704..10777TCONS_00036093-exon-sc0001413-1491911889:10704..10777Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1510915933:10704..10777TCONS_00036093-exon-sc0001413-1510915933:10704..10777Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1575043694:10704..10777TCONS_00036093-exon-sc0001413-1575043694:10704..10777Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1491911889:10976..11107TCONS_00036093-exon-sc0001413-1491911889:10976..11107Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1510915933:10976..11107TCONS_00036093-exon-sc0001413-1510915933:10976..11107Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1575043694:10976..11107TCONS_00036093-exon-sc0001413-1575043694:10976..11107Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1491911889:11141..11542TCONS_00036093-exon-sc0001413-1491911889:11141..11542Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1510915933:11141..11542TCONS_00036093-exon-sc0001413-1510915933:11141..11542Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1575043694:11141..11542TCONS_00036093-exon-sc0001413-1575043694:11141..11542Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1491911889:11573..11671TCONS_00036093-exon-sc0001413-1491911889:11573..11671Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1510915933:11573..11671TCONS_00036093-exon-sc0001413-1510915933:11573..11671Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1575043694:11573..11671TCONS_00036093-exon-sc0001413-1575043694:11573..11671Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1491911889:11705..11968TCONS_00036093-exon-sc0001413-1491911889:11705..11968Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1510915933:11705..11968TCONS_00036093-exon-sc0001413-1510915933:11705..11968Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1575043694:11705..11968TCONS_00036093-exon-sc0001413-1575043694:11705..11968Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1491911889:12068..12218TCONS_00036093-exon-sc0001413-1491911889:12068..12218Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1510915933:12068..12218TCONS_00036093-exon-sc0001413-1510915933:12068..12218Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1575043694:12068..12218TCONS_00036093-exon-sc0001413-1575043694:12068..12218Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1491911889:12501..12769TCONS_00036093-exon-sc0001413-1491911889:12501..12769Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1510915933:12501..12769TCONS_00036093-exon-sc0001413-1510915933:12501..12769Clytia hemisphaericaexon
TCONS_00036093-exon-sc0001413-1575043694:12501..12769TCONS_00036093-exon-sc0001413-1575043694:12501..12769Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001413supercontigsc0001413:8148..12769 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.60243	3.07501	1.83217	0.977859	1.47486	0.638635	0	0.313147	0	0.671582	0	0	0.33294	0.292835	0.112924	0.442241	2.90798	2.35235	0.120999	0	13.9099	11.852	35.2276	43.1706	11.8174	11.7588	51.7525	47.1233	34.3769	25.0968
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036093 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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