|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036078 ID=TCONS_00036078|Name=TCONS_00036078|organism=Clytia hemisphaerica|type=transcript|length=2458bp CTCGATTGTACCTTAAATACTCTGAAAGAATATCTTCGATATAAAACGGA AATCTGCTGGAATACAATATCTCAATCTTGAGACACTGAACGAAATTACA AAGTCTGAAACTTTTTAATATTGTGGCTGAGTCATCTACCGAGAATACAC AATGAACTCCATTGTGGTTCTAACCACGCTGCTATTTCTACTGGTATCTA CATCGTATGGTGAGATCGATGCTGAAAACAAACGCGAATCTGTTGTTGTT GATTCATCAAATTCAAACAATGCTTTAGAAGAGATCAAAAAAGTTGCTGA CAAAGCTATTGAAACATTGGAAAAAGAACTTTTAAAGAAAAAATCTTCTT TAATTAACACTGGTGATGCATCCAAAGAAGTCCAACAAAATGAAAATGCT GACATCAACAAAAAGAAGAATTCAGTTGTAACCAAGGACGAGGGAAAGGA TATTGTTGTTAAGGAAATAAAAAACACTGCAGCAATGACTACAGATACCG GAATGGATGAAAAGCGTTCTGCCGACAGACCATGGATCAAATTAAAGAAA GAATCTAACCTACCCTGGAATGCCGCTGAAAGTAAAAAAGAATCACTACC TTTCTACATGTCCAAAAAGAAAGGTAAAAAGGAATATCAACGCCAACACC TTCCATGGGAAATGAAAACTAACAAGATCAACAAGAAAAATGCGTTACCG TTTTATGACGTCAAGAAAAGCGAACTTCCTTTTTATATGGCGAAAAAAAG CGAACTTCCTTTCTATATGGCAAAGAAGGAAGCCTTACCTTGGTATAGTC AAGCAAATAAGAAGGATGCATTGCCGTTCTACATAGCAAAGAAAAGTGAG CTCCCATTTTACATGGCGAAAAAAAGTGCACTTCCATTTTATATGGCAAA GAAAAATGCTCTACCCGTGAAATTTTTCTTGTCAAAGAAAAACGCGTTAC CGTTTTACATGTCCAAGAAAGACGAGCTACCTTTCTACATGAAAAAGTCA GCTCTCCCGTTTTACATGGCTAAAAAAGAAGCTCTTCCTTTCTATATGAA GAAATCTACGTTACCATTTTATATGGCTAAAAAAGAATCATTACCGTTTT ACAACACAAAGAAGTCCGCATCTCAAGCTTTACCCTTCTATGATGTTAAG AAGTCCGCCCTACCTTTTTACATGAAGAAGTCCGCCCTACCATTTTACAA TGCAAAGAAGTCCACCCTACCATTTTACACTGCGAAGAAGTCTACCCTAC CATTTTACATGAAGAAGTCCGCCCTACCATTTTACAGTGCAAAGAAGTCC GCCCTCCCATTTGATGGTGTCAAAAAGAGTACCCTCCCCTTTTACCACGC CAAGAAATCAGCCCTTCCTTTCTATATTGCTAAAAAAAGCGAGTTACCGT TTTACAGCTCGAAGAAATCCGCCCTACCGTTTTATGACGTCAAGAAATCC GCCCTACCGTTTTATGACGTAAAGAAGGAAACTCTGCCATTTTACATGGC CTAGGAAAATACTTTCCCATTCTTCTCGAAGGAGAGTCAACCTTTTGCTT TATAATAACATATTAAACGCTGTATTGAAAATAACGGttcaaaataatta aaacaCTTAAGAAGAATAAGAAGATTCTGAAGACATTCTTAGAACATTCT TAGCTTATTCTCCgttaaaatattttggttttgtAATCAAAGAtcctaga aattttcaaatttgatgttttatttttgaatattcaGTGGAATATACTCA TTATATCTTAAGAGTATATATTTTCGTCGCGAAtcgcgaatttttttttg agaaacgTGTTTCGCGAGTTCTAATTTACGCGATTGCGACTTTCcacgtg tattaaatttcgtgaACCACTAAATTCGATATTATCAAACAAGAGTATTA AAAAAGCAAGAAAAGGATTGCTTTTGCCTGAATCACAACGTGATAGGTGc aaaaaaggtgtcaaaattGCGGAATAAAATGGTGACAAAAAGTAAGCCAT TGGGAAAATACTTTGGcgtattttcaaggtttttcacgtctatcattttt gcaatttttgaaagtcaaacagtactaaattttgcgaaattttacCTAAA AACTCACGGAATCAAGTACACGCGAAAACTTAGTACCCAGGAAAACAAAT ACGCTTaaggtatttttgtttttttatttttcaagcaCTAACACTATAAT CGTCCCTGTGGGGATGCTATTAGGCCCGTGGGGgtggggtactagggttg cgagctgacggggagGTGCCACCTGACTTTCGATcctggacccttaccgg gactaaaaagcaaaaaacaatggacaattttgtaaattttacgaccctta ttaggaaaaatttttccgaccctcAGTGGGACtgatatttgattttctga attttctgacccttagcgggactttggaaatccaaaaaaggcaccctcaa aggcggca Run BLAST on NCBI protein sequence of TCONS_00036078-protein >TCONS_00036078-protein ID=TCONS_00036078-protein|Name=TCONS_00036078-protein|organism=Clytia hemisphaerica|type=polypeptide|length=450bp
MNSIVVLTTLLFLLVSTSYGEIDAENKRESVVVDSSNSNNALEEIKKVAD KAIETLEKELLKKKSSLINTGDASKEVQQNENADINKKKNSVVTKDEGKD IVVKEIKNTAAMTTDTGMDEKRSADRPWIKLKKESNLPWNAAESKKESLP FYMSKKKGKKEYQRQHLPWEMKTNKINKKNALPFYDVKKSELPFYMAKKS ELPFYMAKKEALPWYSQANKKDALPFYIAKKSELPFYMAKKSALPFYMAK KNALPVKFFLSKKNALPFYMSKKDELPFYMKKSALPFYMAKKEALPFYMK KSTLPFYMAKKESLPFYNTKKSASQALPFYDVKKSALPFYMKKSALPFYN AKKSTLPFYTAKKSTLPFYMKKSALPFYSAKKSALPFDGVKKSTLPFYHA KKSALPFYIAKKSELPFYSSKKSALPFYDVKKSALPFYDVKKETLPFYMA Run BLAST on NCBI transcript from alignment at sc0001410:56317..58969- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036078 ID=TCONS_00036078|Name=TCONS_00036078|organism=Clytia hemisphaerica|type=transcript|length=2653bp|location=Sequence derived from alignment at sc0001410:56317..58969- (Clytia hemisphaerica) CTCGATTGTACCTTAAATACTCTGAAAGAATATCTTCGATATAAAACGGA
AATCTGCTGGAATACAATATCTCAATCTTGAGACACTGAACGAAATTACA
AAGTCTGAAACTTTTTAATATTGTGGCTGAGTCATCTACCGAGAATACAC
AATGAACTCCATTGTGGTTCTAACCACGCTGCTATTTCTACTGGTATCTA
CATCGTATGGTGAGATCGATGCTGAAAACAAACGCGAATCTGTTGTTGTT
GATTCATCAAATTCAAACAATGCTTTAGAAGAGATCAAAAAAGTTGCTGA
CAAAGCTATTGAAACATTGGAAAAAGAACTTTTAAAGAAAAAATCTTCTT
TAATTAACACTGGTGATGCATCCAAAGAAGTCCAACAAAATGAAAATGCT
GACATCAACAAAAAGAAGAATTCAGTTGTAACCAAGGACGAGGGAAAGGA
TATTGTTGTTAAGGAAATAAAAAACACTGCAGCAATGACTACAGATACCG
GAATGGATGAAAAGCGTTCTGCCGACAGACCATGGATCAAATTAAAGAAA
GAATCTAACCTACCCTGGAATGCCGCTGAAAGTAAAAAAGAATCACTACC
TTTCTACATGTCCAAAAAGAAAGGTAAAAAGGAATATCAACGCCAACACC
TTCCATGGGAAATGAAAACTAACAAGATCAACAAGAAAAATGCGTTACCG
TTTTATGACGTCAAGAAAAGCGAACTTCCTTTTTATATGGCGAAAAAAAG
CGAACTTCCTTTCTATATGGCAAAGAAGGAAGCCTTACCTTGGTATAGTC
AAGCAAATAAGAAGGATGCATTGCCGTTCTACATAGCAAAGAAAAGTGAG
CTCCCATTTTACATGGCGAAAAAAAGTGCACTTCCATTTTATATGGCAAA
GAAAAATGCTCTACCCGTGAAATTTTTCTTGTCAAAGAAAAACGCGTTAC
CGTTTTACATGTCCAAGAAAGACGAGCTACCTTTCTACATGAAAAAGTCA
GCTCTCCCGTTTTACATGGCTAAAAAAGAAGCTCTTCCTTTCTATATGAA
GAAATCTACGTTACCATTTTATATGGCTAAAAAAGAATCATTACCGTTTT
ACAACACAAAGAAGTCCGCATCTCAAGCTTTACCCTTCTATGATGTTAAG
AAGTCCGCCCTACCTTTTTACATGAAGAAGTCCGCCCTACCATTTTACAT
GAAGAAGTCCGCCCTACCATCTTACAATGCGAAGAAGTCCGCCCTGCCTT
TTTACGTGAAGAAGTCCGCCCTACCTTTTTACATGAAGAAGTCCGCCCTA
CCTTTTTACATGAAGAAGTCCACTTTACCATTTTACATGAAGAAGTCCGC
CCTCCCATTTTACAATGCAAAGAAGTCCACCCTACCATTTTACACTGCGA
AGAAGTCTACCCTACCATTTTACATGAAGAAGTCCGCCCTACCATTTTAC
ATTGCAAAGAAGTCCGCCCTAACATTTTACAGTGCAAAGAAGTCCGCCCT
CCCATTTGATGGTGTCAAAAAGAGTACCCTCCCCTTTTACCACGCCAAGA
AATCAGCCCTTCCTTTCTATATTGCTAAAAAAAGCGAGTTACCGTTTTAC
AGCTCGAAGAAATCCGCCCTACCGTTTTATGACGTCAAGAAATCCGCCCT
ACCGTTTTATGACGTAAAGAAGGAAACTCTGCCATTTTACATGGCCTAGG
AAAATACTTTCCCATTCTTCTCGAAGGAGAGTCAACCTTTTGCTTTATAA
TAACATATTAAACGCTGTATTGAAAATAACGGTTCAAAATAATTAAAACA
CTTAAGAAGAATAAGAAGATTCTGAAGACATTCTTAGAACATTCTTAGCT
TATTCTCCGTTAAAATATTTTGGTTTTGTAATCAAAGATCCTAGAAATTT
TCAAATTTGATGTTTTATTTTTGAATATTCAGTGGAATATACTCATTATA
TCTTAAGAGTATATATTTTCGTCGCGAATCGCGAATTTTTTTTTGAGAAA
CGTGTTTCGCGAGTTCTAATTTACGCGATTGCGACTTTCCACGTGTATTA
AATTTCGTGAACCACTAAATTCGATATTATCAAACAAGAGTATTAAAAAA
GCAAGAAAAGGATTGCTTTTGCCTGAATCACAACGTGATAGGTGCAAAAA
AGGTGTCAAAATTGCGGAATAAAATGGTGACAAAAAGTAAGCCATTGGGA
AAATACTTTGGCGTATTTTCAAGGTTTTTCACGTCTATCATTTTTGCAAT
TTTTGAAAGTCAAACAGTACTAAATTTTGCGAAATTTTACCTAAAAACTC
ACGGAATCAAGTACACGCGAAAACTTAGTACCCAGGAAAACAAATACGCT
TAAGGTATTTTTGTTTTTTTATTTTTCAAGCACTAACACTATAATCGTCC
CTGTGGGGATGCTATTAGGCCCGTGGGGGTGGGGTACTAGGGTTGCGAGC
TGACGGGGAGGTGCCACCTGACTTTCGATCCTGGACCCTTACCGGGACTA
AAAAGCAAAAAACAATGGACAATTTTGTAAATTTTACGACCCTTATTAGG
AAAAATTTTTCCGACCCTCAGTGGGACTGATATTTGATTTTCTGAATTTT
CTGACCCTTAGCGGGACTTTGGAAATCCAAAAAAGGCACCCTCAAAGGCG
GCA Coding sequence (CDS) from alignment at sc0001410:56317..58969- >TCONS_00036078 ID=TCONS_00036078|Name=TCONS_00036078|organism=Clytia hemisphaerica|type=CDS|length=4059bp|location=Sequence derived from alignment at sc0001410:56317..58969- (Clytia hemisphaerica) AGTGCAAAGAAGTCCGCCCTCCCATTTGATGGTGTCAAAAAGAGTACCCT CCCCTTTTACCACGCCAAGAAATCAGCCCTTCCTTTCTATATTGCTAAAA AAAGCGAGTTACCGTTTTACAGCTCGAAGAAATCCGCCCTACCGTTTTAT GACGTCAAGAAATCCGCCCTACCGTTTTATGACGTAAAGAAGGAAACTCT GCCATTTTACATGGCCTAGAATGCAAAGAAGTCCACCCTACCATTTTACA CTGCGAAGAAGTCTACCCTACCATTTTACATGAAGAAGTCCGCCCTACCA TTTTACATGAACTCCATTGTGGTTCTAACCACGCTGCTATTTCTACTGGT ATCTACATCGTATGGTGAGATCGATGCTGAAAACAAACGCGAATCTGTTG TTGTTGATTCATCAAATTCAAACAATGCTTTAGAAGAGATCAAAAAAGTT GCTGACAAAGCTATTGAAACATTGGAAAAAGAACTTTTAAAGAAAAAATC TTCTTTAATTAACACTGGTGATGCATCCAAAGAAGTCCAACAAAATGAAA ATGCTGACATCAACAAAAAGAAGAATTCAGTTGTAACCAAGGACGAGGGA AAGGATATTGTTGTTAAGGAAATAAAAAACACTGCAGCAATGACTACAGA TACCGGAATGGATGAAAAGCGTTCTGCCGACAGACCATGGATCAAATTAA AGAAAGAATCTAACCTACCCTGGAATGCCGCTGAAAGTAAAAAAGAATCA CTACCTTTCTACATGTCCAAAAAGAAAGGTAAAAAGGAATATCAACGCCA ACACCTTCCATGGGAAATGAAAACTAACAAGATCAACAAGAAAAATGCGT TACCGTTTTATGACGTCAAGAAAAGCGAACTTCCTTTTTATATGGCGAAA AAAAGCGAACTTCCTTTCTATATGGCAAAGAAGGAAGCCTTACCTTGGTA TAGTCAAGCAAATAAGAAGGATGCATTGCCGTTCTACATAGCAAAGAAAA GTGAGCTCCCATTTTACATGGCGAAAAAAAGTGCACTTCCATTTTATATG GCAAAGAAAAATGCTCTACCCGTGAAATTTTTCTTGTCAAAGAAAAACGC GTTACCGTTTTACATGTCCAAGAAAGACGAGCTACCTTTCTACATGAAAA AGTCAGCTCTCCCGTTTTACATGGCTAAAAAAGAAGCTCTTCCTTTCTAT ATGAAGAAATCTACGTTACCATTTTATATGGCTAAAAAAGAATCATTACC GTTTTACAACACAAAGAAGTCCGCATCTCAAGCTTTACCCTTCTATGATG TTAAGAAGTCCGCCCTACCTTTTTACATGAAGAAGTCCGCCCTACCATTT TACAGTGCAAAGAAGTCCGCCCTCCCATTTGATGGTGTCAAAAAGAGTAC CCTCCCCTTTTACCACGCCAAGAAATCAGCCCTTCCTTTCTATATTGCTA AAAAAAGCGAGTTACCGTTTTACAGCTCGAAGAAATCCGCCCTACCGTTT TATGACGTCAAGAAATCCGCCCTACCGTTTTATGACGTAAAGAAGGAAAC TCTGCCATTTTACATGGCCTAGAATGCAAAGAAGTCCACCCTACCATTTT ACACTGCGAAGAAGTCTACCCTACCATTTTACATGAAGAAGTCCGCCCTA CCATTTTACATGAACTCCATTGTGGTTCTAACCACGCTGCTATTTCTACT GGTATCTACATCGTATGGTGAGATCGATGCTGAAAACAAACGCGAATCTG TTGTTGTTGATTCATCAAATTCAAACAATGCTTTAGAAGAGATCAAAAAA GTTGCTGACAAAGCTATTGAAACATTGGAAAAAGAACTTTTAAAGAAAAA ATCTTCTTTAATTAACACTGGTGATGCATCCAAAGAAGTCCAACAAAATG AAAATGCTGACATCAACAAAAAGAAGAATTCAGTTGTAACCAAGGACGAG GGAAAGGATATTGTTGTTAAGGAAATAAAAAACACTGCAGCAATGACTAC AGATACCGGAATGGATGAAAAGCGTTCTGCCGACAGACCATGGATCAAAT TAAAGAAAGAATCTAACCTACCCTGGAATGCCGCTGAAAGTAAAAAAGAA TCACTACCTTTCTACATGTCCAAAAAGAAAGGTAAAAAGGAATATCAACG CCAACACCTTCCATGGGAAATGAAAACTAACAAGATCAACAAGAAAAATG CGTTACCGTTTTATGACGTCAAGAAAAGCGAACTTCCTTTTTATATGGCG AAAAAAAGCGAACTTCCTTTCTATATGGCAAAGAAGGAAGCCTTACCTTG GTATAGTCAAGCAAATAAGAAGGATGCATTGCCGTTCTACATAGCAAAGA AAAGTGAGCTCCCATTTTACATGGCGAAAAAAAGTGCACTTCCATTTTAT ATGGCAAAGAAAAATGCTCTACCCGTGAAATTTTTCTTGTCAAAGAAAAA CGCGTTACCGTTTTACATGTCCAAGAAAGACGAGCTACCTTTCTACATGA AAAAGTCAGCTCTCCCGTTTTACATGGCTAAAAAAGAAGCTCTTCCTTTC TATATGAAGAAATCTACGTTACCATTTTATATGGCTAAAAAAGAATCATT ACCGTTTTACAACACAAAGAAGTCCGCATCTCAAGCTTTACCCTTCTATG ATGTTAAGAAGTCCGCCCTACCTTTTTACATGAAGAAGTCCGCCCTACCA TTTTACAGTGCAAAGAAGTCCGCCCTCCCATTTGATGGTGTCAAAAAGAG TACCCTCCCCTTTTACCACGCCAAGAAATCAGCCCTTCCTTTCTATATTG CTAAAAAAAGCGAGTTACCGTTTTACAGCTCGAAGAAATCCGCCCTACCG TTTTATGACGTCAAGAAATCCGCCCTACCGTTTTATGACGTAAAGAAGGA AACTCTGCCATTTTACATGGCCTAGAATGCAAAGAAGTCCACCCTACCAT TTTACACTGCGAAGAAGTCTACCCTACCATTTTACATGAAGAAGTCCGCC CTACCATTTTACATGAACTCCATTGTGGTTCTAACCACGCTGCTATTTCT ACTGGTATCTACATCGTATGGTGAGATCGATGCTGAAAACAAACGCGAAT CTGTTGTTGTTGATTCATCAAATTCAAACAATGCTTTAGAAGAGATCAAA AAAGTTGCTGACAAAGCTATTGAAACATTGGAAAAAGAACTTTTAAAGAA AAAATCTTCTTTAATTAACACTGGTGATGCATCCAAAGAAGTCCAACAAA ATGAAAATGCTGACATCAACAAAAAGAAGAATTCAGTTGTAACCAAGGAC GAGGGAAAGGATATTGTTGTTAAGGAAATAAAAAACACTGCAGCAATGAC TACAGATACCGGAATGGATGAAAAGCGTTCTGCCGACAGACCATGGATCA AATTAAAGAAAGAATCTAACCTACCCTGGAATGCCGCTGAAAGTAAAAAA GAATCACTACCTTTCTACATGTCCAAAAAGAAAGGTAAAAAGGAATATCA ACGCCAACACCTTCCATGGGAAATGAAAACTAACAAGATCAACAAGAAAA ATGCGTTACCGTTTTATGACGTCAAGAAAAGCGAACTTCCTTTTTATATG GCGAAAAAAAGCGAACTTCCTTTCTATATGGCAAAGAAGGAAGCCTTACC TTGGTATAGTCAAGCAAATAAGAAGGATGCATTGCCGTTCTACATAGCAA AGAAAAGTGAGCTCCCATTTTACATGGCGAAAAAAAGTGCACTTCCATTT TATATGGCAAAGAAAAATGCTCTACCCGTGAAATTTTTCTTGTCAAAGAA AAACGCGTTACCGTTTTACATGTCCAAGAAAGACGAGCTACCTTTCTACA TGAAAAAGTCAGCTCTCCCGTTTTACATGGCTAAAAAAGAAGCTCTTCCT TTCTATATGAAGAAATCTACGTTACCATTTTATATGGCTAAAAAAGAATC ATTACCGTTTTACAACACAAAGAAGTCCGCATCTCAAGCTTTACCCTTCT ATGATGTTAAGAAGTCCGCCCTACCTTTTTACATGAAGAAGTCCGCCCTA CCATTTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00036078-exon-sc0001410-1575043694:57772..58969 | TCONS_00036078-exon-sc0001410-1575043694:57772..58969 | Clytia hemisphaerica | exon |
| TCONS_00036078-exon-sc0001410-1575043694:57520..57606 | TCONS_00036078-exon-sc0001410-1575043694:57520..57606 | Clytia hemisphaerica | exon |
| TCONS_00036078-exon-sc0001410-1575043694:56317..57489 | TCONS_00036078-exon-sc0001410-1575043694:56317..57489 | Clytia hemisphaerica | exon |
| TCONS_00036078-exon-sc0001410-1510915933:57772..58969 | TCONS_00036078-exon-sc0001410-1510915933:57772..58969 | Clytia hemisphaerica | exon |
| TCONS_00036078-exon-sc0001410-1510915933:57520..57606 | TCONS_00036078-exon-sc0001410-1510915933:57520..57606 | Clytia hemisphaerica | exon |
| TCONS_00036078-exon-sc0001410-1510915933:56317..57489 | TCONS_00036078-exon-sc0001410-1510915933:56317..57489 | Clytia hemisphaerica | exon |
| TCONS_00036078-exon-sc0001410-1491911889:57772..58969 | TCONS_00036078-exon-sc0001410-1491911889:57772..58969 | Clytia hemisphaerica | exon |
| TCONS_00036078-exon-sc0001410-1491911889:57520..57606 | TCONS_00036078-exon-sc0001410-1491911889:57520..57606 | Clytia hemisphaerica | exon |
| TCONS_00036078-exon-sc0001410-1491911889:56317..57489 | TCONS_00036078-exon-sc0001410-1491911889:56317..57489 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0001410 | supercontig | sc0001410:56317..58969 - |
Blast
The following BLAST results are available for this feature:
|