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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036074 ID=TCONS_00036074|Name=TCONS_00036074|organism=Clytia hemisphaerica|type=transcript|length=1138bpRun BLAST on NCBI protein sequence of TCONS_00036074-protein >TCONS_00036074-protein ID=TCONS_00036074-protein|Name=TCONS_00036074-protein|organism=Clytia hemisphaerica|type=polypeptide|length=379bp CADSPNICILTQYCNKGSLQDVLFNDDLKLDWMFQVSIASDITRGMQYIQRun BLAST on NCBI transcript from alignment at sc0001410:27604..54266- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00036074 ID=TCONS_00036074|Name=TCONS_00036074|organism=Clytia hemisphaerica|type=transcript|length=26663bp|location=Sequence derived from alignment at sc0001410:27604..54266- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001410:27604..54266- >TCONS_00036074 ID=TCONS_00036074|Name=TCONS_00036074|organism=Clytia hemisphaerica|type=CDS|length=10233bp|location=Sequence derived from alignment at sc0001410:27604..54266- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00036074 vs. Swiss-Prot (Human)
Match: ANPRA (Atrial natriuretic peptide receptor 1 OS=Homo sapiens GN=NPR1 PE=1 SV=1) HSP 1 Score: 407.912 bits (1047), Expect = 4.590e-132 Identity = 209/382 (54.71%), Postives = 264/382 (69.11%), Query Frame = 2
Query: 2 CADSPNICILTQYCNKGSLQDVLFNDDLKLDWMFQVSIASDITRGMQYIQNGASIGVHGRLKSTNCVIDSRWTCKITDIGLFKFKDGQAVDEEVGIDHEYDALLWTAPEHLDNIKE--ERSKEGDVYSYGIILQEIITRGSPYSMYE-NLSAKEILDRVKKCSNPRFRPVVPEDYGHPEYHDLMSQCWEEAPTSRPRFDEIMKALKKLNGGKNINIVDNMIKMMEKYTDHLEELVAERTKQLEDEKAKTDELLYRMLPRTVAEQLKHGEAVSAETFDMVTIFFSDIVGFTKLAAESTPMQVVDLLNDLYTCFDQIVDQHHVYKVETIGDAYMVVSGLPERNGNRHAGEIARMSLDLLSATTTFVVRHKKEYRIQLRIGIHSG 1138
C D PNICILT+YC +GSLQD+L N+ + LDWMF+ S+ +DI +GM ++ NGA I HG LKS+NCV+D R+ KITD GL F+D +D E G Y LWTAPE L S+ GDVYS+GIILQEI R + + +LS KEI++RV + P FRP + E LM +CW E P RP F +I L+K N + NI+DN++ ME+Y ++LEELV ERT+ +EK K + LLY++LP +VAEQLK GE V AE FD VTI+FSDIVGFT L+AESTPMQVV LLNDLYTCFD ++D VYKVETIGDAYMVVSGLP RNG HA E+ARM+L LL A +F +RH+ + +++LRIGIH+G
Sbjct: 602 CTDPPNICILTEYCPRGSLQDILENESITLDWMFRYSLTNDIVKGMLFLHNGA-ICSHGNLKSSNCVVDGRFVLKITDYGLESFRD---LDPEQG-HTVYAKKLWTAPELLRMASPPVRGSQAGDVYSFGIILQEIALRSGVFHVEGLDLSPKEIIERVTRGEQPPFRPSLALQSHLEELGLLMQRCWAEDPQERPPFQQIRLTLRKFNRENSSNILDNLLSRMEQYANNLEELVEERTQAYLEEKRKAEALLYQILPHSVAEQLKRGETVQAEAFDSVTIYFSDIVGFTALSAESTPMQVVTLLNDLYTCFDAVIDNFDVYKVETIGDAYMVVSGLPVRNGRLHACEVARMALALLDAVRSFRIRHRPQEQLRLRIGIHTG 978 The following BLAST results are available for this feature:
BLAST of TCONS_00036074 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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