TCONS_00036060 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036060
Unique NameTCONS_00036060
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length821

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036060 ID=TCONS_00036060|Name=TCONS_00036060|organism=Clytia hemisphaerica|type=transcript|length=821bp
AAGAAATATGCaaacatgtttttattatgTATATGCAactttaatacaat
aatgaccggttggTGATTGCTGTACTGGGAAatatgtaggcccgtcgtca
tgcaaaAGGAAGCAACTGCATTGTCCAACACGCCACGTAGCCCTCTTCGT
AAAAGTAACCGATTAACAATGAGTCAAAATTCATGTTTATATCATTAGCC
AAactaaagttattcaaaaagcAAGTTTTATTGATGTCAGCATTCTTTCG
TCTTTCCAGTATTTTGCAAACAAAATGAGGGCGTAAACAATCGTGTAACA
TCCCTACAGTAAAACATCATCACGGTACCCTTCATATTCAGTAATTGCTT
TGTTCGTTTTCCGCCGACTAATGCTCTCAAAAAAGATGGTAAAACTGCAT
GTTTTTGAGAAACCCCATAAATAACCTGAGGCCATATAGATTAAGCTGAG
TCTTACGTGAACAAGCAACTACTTTATTCATATATAGGTCTATGTGATAA
GGTAGGAAAGACTCTAGTAGTTTCTAGGGCCCTCAACGGGGTTACACTAA
ATGAACTATAAGAATCGGCTGTAAACAGTCAGTTGAACGGCTCTCGCTAT
TGGTATCGAATAACACTTGTATTGGAAACATAATTTAGTCTTTAAAAACC
GCAACATGTGTCTTCATACACTTCGAGAAGGtgaaaaatgtctaaaaaga
aGTCAAAACGGCTCTAAATTAGCGTTTTCCAGGATACTTCGGGCAATCAG
GAAAACACAAATTGCACCTAGACACACCCTTGGCAGGTCTGAATGTAGTA
TCAAGCCATTTAGACCTATTG
Run BLAST on NCBI

transcript from alignment at sc0001408:95130..95950

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036060 ID=TCONS_00036060|Name=TCONS_00036060|organism=Clytia hemisphaerica|type=transcript|length=821bp|location=Sequence derived from alignment at sc0001408:95130..95950 (Clytia hemisphaerica)
CAATAGGTCTAAATGGCTTGATACTACATTCAGACCTGCCAAGGGTGTGT
CTAGGTGCAATTTGTGTTTTCCTGATTGCCCGAAGTATCCTGGAAAACGC
TAATTTAGAGCCGTTTTGACttctttttagacatttttcaCCTTCTCGAA
GTGTATGAAGACACATGTTGCGGTTTTTAAAGACTAAATTATGTTTCCAA
TACAAGTGTTATTCGATACCAATAGCGAGAGCCGTTCAACTGACTGTTTA
CAGCCGATTCTTATAGTTCATTTAGTGTAACCCCGTTGAGGGCCCTAGAA
ACTACTAGAGTCTTTCCTACCTTATCACATAGACCTATATATGAATAAAG
TAGTTGCTTGTTCACGTAAGACTCAGCTTAATCTATATGGCCTCAGGTTA
TTTATGGGGTTTCTCAAAAACATGCAGTTTTACCATCTTTTTTGAGAGCA
TTAGTCGGCGGAAAACGAACAAAGCAATTACTGAATATGAAGGGTACCGT
GATGATGTTTTACTGTAGGGATGTTACACGATTGTTTACGCCCTCATTTT
GTTTGCAAAATACTGGAAAGACGAAAGAATGCTGACATCAATAAAACTTg
ctttttgaataactttagtTTGGCTAATGATATAAACATGAATTTTGACT
CATTGTTAATCGGTTACTTTTACGAAGAGGGCTACGTGGCGTGTTGGACA
ATGCAGTTGCTTCCTtttgcatgacgacgggcctacatatTTCCCAGTAC
AGCAATCAccaaccggtcattattgtattaaagtTGCATATAcataataa
aaacatgtttGCATATTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021196XLOC_021196Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036060-exon-sc0001408-1491911889:95130..95950TCONS_00036060-exon-sc0001408-1491911889:95130..95950Clytia hemisphaericaexon
TCONS_00036060-exon-sc0001408-1510915933:95130..95950TCONS_00036060-exon-sc0001408-1510915933:95130..95950Clytia hemisphaericaexon
TCONS_00036060-exon-sc0001408-1575043694:95130..95950TCONS_00036060-exon-sc0001408-1575043694:95130..95950Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001408supercontigsc0001408:95130..95950 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.043518	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036060 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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