TCONS_00036048 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036048
Unique NameTCONS_00036048
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length852

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036048 ID=TCONS_00036048|Name=TCONS_00036048|organism=Clytia hemisphaerica|type=transcript|length=852bp
AATACATTGAGATAATCATTGAATCATTGGTGGCAGCAAACGATGTTCTC
CAACGAGAATTCGTCATGCCGTTGCAACGCAGCTGGCAGGTTATGACAAT
GAAAAATTGGACGTTGTTGCCAAGGTCTTCATGAAAAATCGAGAAGGAAC
GACGCAGAAGTTCTATGTCCAATACTGGAATCAAAGAGAAGCCATCCGCT
TATCCATGAAGATGTTCGAAAGAACGAGAGGTGAAATCCAAATTGACTTG
CCAAAGCCCAACCCAGTCGACAAAGAAGAGTGCATCAAGTGGtatgaaga
aaacaaaaaaagaatctcATCGGAACATCGGCTGGATTTGAATGATCGAG
ATCTTGAGAAGTCCATGTTTGGGGAATTAGATGAGAGAATTGACGACTTT
CAGACGCTGGTTGATGAAGAAGTAACAGACTTGAAAGAACCTCTAAATGA
AGCAGAAGATTTAATTAATTCAGCAACCTCATCAGGATCAGACCGAAAAG
AGCTTGAGATTGAAACAGATGAGCCAGCAGATTTAGAAAAAGTAACAGAC
TCGAAAAAACATCCAACGGAAGCAGAAGATTCTGCAAAAACAGGAACCTC
ATCAGAATCAGAACcacaaaaacatcaaattgaAACATATGAGAAAACAG
ATTTAGCAGAAGCTACAACATCAGTAGAATTACAAATGGAAGTAGAAGAT
CttgcaaaagaaaaacaagCTGTGGAAACTACAGAAACCAGCACTAAAGA
ACCAGATTTTCAAATAGAAACAGTCAACCaacaatcaaaatcaagaaaat
gcCTTGTTAAAATGTTACCCATCAAAATAAACGAGACACAACCTATCACC
AG
Run BLAST on NCBI

transcript from alignment at sc0001408:87678..90310+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036048 ID=TCONS_00036048|Name=TCONS_00036048|organism=Clytia hemisphaerica|type=transcript|length=2633bp|location=Sequence derived from alignment at sc0001408:87678..90310+ (Clytia hemisphaerica)
AATACATTGAGATAATCATTGAATCATTGGTGGGTTAGTTAGCTAATTTT
TCCAATTAACAATTGGCGTTTACATCAAGATCTCCAAAATCTGACGAGTC
GTTTGTTGATTATAAAATGAATCAATATGAAAGTTAAAGGGATAgctttt
atattgattttttaGGTTTCGAAATTTTGTAACCCTAAAATAGCTACAGG
ATGATTTTCACTTTGgtcaatttctttttgtaacGCAAAAATATGAATTC
TTTTCGTTTTATATAGTTGACCTCTTGTCTGACATGAATTTATCTCTCAG
GCAACACGTCTTGTGTTTACGTCTTTATCGTTGCTAACATTATGGGTAAC
AATCTATAGCTTGTATATTTTATAGCTTCATCGTAAATGGTTGattattc
ttttaattttacAGCAGCAAACGATGTTCTCCAACGAGAATTCGTCATGC
CGTTGCAACGCAGCTGGCAGGTTATGACAATGAAAAATTGGACGTTGTTG
CCAAGGTCTTCATGAAAAATCGAGAAGGAACGACGCAGAAGTTCTATGTC
CAATACTGGAATCAAAGAGAAGCCATCCGCTTATCCATGAAGATGTTCGA
AAGAACGAGAGGTGAAATCCAAATTGACTTGCCAAAGCCCAACCCAGTCG
ACAAAGAAGAGTGCATCAAGTGGtatgaagaaaacaaaaaaagaatctcA
TCGGAACATCGGCTGGATTTGAATGATCGAGATCTTGAGAAGTCCATGTT
TGGGGAATTAGGTTAGATCTCTACAAGTGCTATATGAAAATGAATACTTT
TTACGATTTATTTGCTTTATCATTTAATCTGCATCAGCAGGGGTTGGTTT
GGAGCAGGCTTATTTACctttaagtgttttaaaaatGCATACGATCATTG
AACCGAAAAGTTGAGGTTAGTTTCTTCTTCAGtaaatttcattatttcca
ACTTTTATACTGTTTTAATAGATGAGAGAATTGACGACTTTCAGACGCTG
GTTGATGAAGAAGGTATCACATCAATTTCTATTAATCGTTACAACATATT
TTTCTTGGAGCTTATTGTTTTAAGCTATGAAAtctcaaaaactttctttg
tgATCGATATAATTGAGGCTGGACATTTCATGAGATGTACAAAGTCACAT
TGTGTTTCAATAGACATTGGATGGATTATTTAGGGTTGAATTCACAAATA
TTTCCATAAAATGATTAATTTAAAGTCCATAAATGAAACCGTTCTGCTTT
TTATATGTCAGTAACAGACTTGAAAGAACCTCTAAATGAAGCAGAAGATT
TAATTAATTCAGCAACCTCATCAGGATCAGACCGAAAAGAGCTTGAGATT
GAAACAGATGAGCCAGCAGATTTAGAAAAAGGTACTTTTTCTTTAATATA
TACCACTACGATAgaaaagtgaaaacaaaaagCATGACTGAATAAAACTA
AAGATGAAGTGAGTTTGACAATACGAAATCatttatttcttaaatttgCA
TTTCACTAATATTTTCAGGAATATTTGATTATATAGCTATGAGTAGAGAT
ATTCTGTTTTCTCTATATATCAGTAACAGACTCGAAAAAACATCCAACGG
AAGCAGAAGATTCTGCAAAAACAGGAACCTCATCAGAATCAGAACcacaa
aaacatcaaattgaAACATATGAGAAAACAGATTTAGCAGAAGGTACTTT
GCTTTTTAATGTCTACATCTAAGGTAACAAAGTGTGAACACGAAAGGCAT
GATCGAATCAAACaagaaataaatttgttttCGTTAATTTGTTTTGTCAT
GATGAGGAGGGTCAAGCGCATTTGACAATACGAAATCTTAATTGTGTTTT
AAATAGGCATTGGATTGATTATTTAGGTTTGAATTCATACTATGACATAT
TTATCAAGTATTTCTAGGAATTGTTTGCTGATAAAGATACGTGTGAAAAT
GTTCCGTTTTTTCTATTTACCAGCTACAACATCAGTAGAATTACAAATGG
AAGTAGAAGATCttgcaaaagaaaaacaagGTGCGaagtttttattactt
tttttgtttgttcactttttaaaaagtatttcgaGTTTTCATAACGtcta
aaattttgtttgttaCGAAAAAACGTTGACAaataaattgattaaaaaca
attttcaaaaagacattCACTTTTTTGGATATATACTTTTTAGGATTGGA
TAGGCAAATTTTCATACATAAATACGCCAAATGCCCTTAGTTAGAAGAGA
CGGAAAAACTTGAACATGtaacattagtttttttttcgaattaattAAAT
CACATGAGACTGATGTCTAGTTCTTTTAAATAACGTTTGTCCTTCTTATT
TCCTAAAAGatgattttttacaatattatcACTTATTAATAACGCAATCA
GCTGTTTGGTCATAGCAAATTTTAAGGAATTGCTCTCGACAGTGTAAATC
TTGTTCATTTAGGACCATTGTAATGACACGTGATCCTTTTTTTATATCAG
CTGTGGAAACTACAGAAACCAGCACTAAAGAACCAGATTTTCAAATAGAA
ACAGTCAACCaacaatcaaaatcaagaaaatgcCTTGTTAAAATGTTACC
CATCAAAATAAACGAGACACAACCTATCACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021189XLOC_021189Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036048-exon-sc0001408-1491911889:87678..87710TCONS_00036048-exon-sc0001408-1491911889:87678..87710Clytia hemisphaericaexon
TCONS_00036048-exon-sc0001408-1510915933:87678..87710TCONS_00036048-exon-sc0001408-1510915933:87678..87710Clytia hemisphaericaexon
TCONS_00036048-exon-sc0001408-1575043694:87678..87710TCONS_00036048-exon-sc0001408-1575043694:87678..87710Clytia hemisphaericaexon
TCONS_00036048-exon-sc0001408-1491911889:88092..88438TCONS_00036048-exon-sc0001408-1491911889:88092..88438Clytia hemisphaericaexon
TCONS_00036048-exon-sc0001408-1510915933:88092..88438TCONS_00036048-exon-sc0001408-1510915933:88092..88438Clytia hemisphaericaexon
TCONS_00036048-exon-sc0001408-1575043694:88092..88438TCONS_00036048-exon-sc0001408-1575043694:88092..88438Clytia hemisphaericaexon
TCONS_00036048-exon-sc0001408-1491911889:88649..88690TCONS_00036048-exon-sc0001408-1491911889:88649..88690Clytia hemisphaericaexon
TCONS_00036048-exon-sc0001408-1510915933:88649..88690TCONS_00036048-exon-sc0001408-1510915933:88649..88690Clytia hemisphaericaexon
TCONS_00036048-exon-sc0001408-1575043694:88649..88690TCONS_00036048-exon-sc0001408-1575043694:88649..88690Clytia hemisphaericaexon
TCONS_00036048-exon-sc0001408-1491911889:88939..89058TCONS_00036048-exon-sc0001408-1491911889:88939..89058Clytia hemisphaericaexon
TCONS_00036048-exon-sc0001408-1510915933:88939..89058TCONS_00036048-exon-sc0001408-1510915933:88939..89058Clytia hemisphaericaexon
TCONS_00036048-exon-sc0001408-1575043694:88939..89058TCONS_00036048-exon-sc0001408-1575043694:88939..89058Clytia hemisphaericaexon
TCONS_00036048-exon-sc0001408-1491911889:89251..89370TCONS_00036048-exon-sc0001408-1491911889:89251..89370Clytia hemisphaericaexon
TCONS_00036048-exon-sc0001408-1510915933:89251..89370TCONS_00036048-exon-sc0001408-1510915933:89251..89370Clytia hemisphaericaexon
TCONS_00036048-exon-sc0001408-1575043694:89251..89370TCONS_00036048-exon-sc0001408-1575043694:89251..89370Clytia hemisphaericaexon
TCONS_00036048-exon-sc0001408-1491911889:89651..89707TCONS_00036048-exon-sc0001408-1491911889:89651..89707Clytia hemisphaericaexon
TCONS_00036048-exon-sc0001408-1510915933:89651..89707TCONS_00036048-exon-sc0001408-1510915933:89651..89707Clytia hemisphaericaexon
TCONS_00036048-exon-sc0001408-1575043694:89651..89707TCONS_00036048-exon-sc0001408-1575043694:89651..89707Clytia hemisphaericaexon
TCONS_00036048-exon-sc0001408-1491911889:90178..90310TCONS_00036048-exon-sc0001408-1491911889:90178..90310Clytia hemisphaericaexon
TCONS_00036048-exon-sc0001408-1510915933:90178..90310TCONS_00036048-exon-sc0001408-1510915933:90178..90310Clytia hemisphaericaexon
TCONS_00036048-exon-sc0001408-1575043694:90178..90310TCONS_00036048-exon-sc0001408-1575043694:90178..90310Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001408supercontigsc0001408:87678..90310 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.284949	0.225321	0.0759302	0.0502894	1.96826	0.840191	1.85922	1.07848	0	0.33884	0.554072	0.128797	0.469476	0.15116	0.570419	0.394692	0	0.417369	0.551521	0.450799	0.269371	0.494056	0.143266	0.307745	0	0	0.135014	0	0	0.183731
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036048 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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