XLOC_021189 (gene) - C. hemisphaerica

Overview
NameXLOC_021189
Unique NameXLOC_021189
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0001408:83818..90310+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_021189 ID=XLOC_021189|Name=XLOC_021189|organism=Clytia hemisphaerica|type=gene|length=6493bp|location=Sequence derived from alignment at sc0001408:83818..90310+ (Clytia hemisphaerica)
TTGATGCATCAAGTGgattgaaagaaagaaaaggttAGCATTCACAGAAG CGAAATTTGTGAATTTATGACAAataatttatttacttttacaGTGACCT AGTTTGTTGCTCAGTAGGTATTGAATTAATTTTATAGGTTTGTATATATA TGACGATTGTATTTAGAGATGAATCCTTGTACACGTTTTAATTTGATTAG TTATACCTTTATATTTATTCTGTTCATTTAGATTCCAAGTCCTCTGATAT ATTGCCTGgcaaaagtaaaaagaaacaaataattAAAGGTTAGTAGACAA ACAACTATATTTGTCGATATGACTGTTGTAGCTACTAAACTATCCTGTCA AAtgtaaatgaaaaattaaatcatGGTGATAACCAATAATTCTATTATTT ATTTTGGTATCAGGTAgccctttttcagaaaagtatAGCGTAGGAGCTGC TTAGTTAAGcatttggttaaaaaaattttaatcctTCTTTACAGAGAAGC TGAAGCAATTCTTTAAAGTAGAGGATGCTGTTGTGTTACTCAATAATGAA GGCGagtttgttcaatttttttttaatttcatttttcttcgaAAAGGGAA TGTTGTGAAGTTTAATGTAGATATCAATATTTATTAAATCATCAACATTG CTCTCGTACCCGCTGCGAatcacttttttgttttgacgaCGGCGTGATTA ACCCTGGGATGGGCTGGTTTTTCCCTCCTGAGAGAaggaaattttaaaca tttagtaatgttttgatgaaaaacatCAAAGATTAATTCATAAATCATAT TATGActcttttagaatattttttctttgaaaacacaAAGTATAAATTGT GATCAAGGTAATTCGGATTACTGCTTTGAAAACAGACTCGGAAGTCAAAT GATTTGTTctcatttatttttatatttattaatGAGATTGGGATTGTTTG TATTTCAATATTTGTTAAATTGCTTTTAACATCacacactttttataaaa atgaaatgcaTGTAGAAAAGAAAGCAAATAACCAATGTCGTGATTTATGA CATAAAGTTATCGAGAATATGAAGTCTTTTTTACCAACCCAGGTCAGGGC TAATTCCTCATCAAATAACATCCGATTATAAATGTCGACAGTGTTCGTCC GGGGATCGAGGGtgcatcaaagtcactctagaTTGCTCTATGCACAAATA GTGAACAAGTTTCAGAGCCAAACCTGCacatttttttctacatgataACT TGTTAATAATACTGATATTACTGATTTCACTGATATTATTATAGATAACC ACAATGGTGATGAAAATGACAACATTGACGATGAAAATGACAACACTGAC TATGAAGGttccaatgaaagaaaaaggaaggaGAAACCTAGATACCAATT AAAATGTCCATACGAGTTTTGTAataaaccagtcaaaaacctCACTACGC ATCTAACATGCACTAAACATGGAAAGTACCCTTTATGGACAAAGGAAGCT GCCTCAAAGGAGCAATCTGTGAGAATTAGGATGTTTAGGTACGGTTTTTT TCACTGAACCAATGGCTCTGCTGATTAAAGTATTATTTTTACCTTCAAAT ACCCAAATAAACTCAAAAAGCATAGAACTTAGTAGAATTGAGAAGGTGTT caatcatttaaaatttttgtgttATTTTAATGATGCTTGATCTCATAATA CATAGTAAAAGGaataatttagaaaataatCATTAAAGTATCCACATTTG AATGATTACGTCATAGCAGGTTGTCCGAATAAAACCACAAAGGAATTTAT AAACCACGTGTTTGTAATGTCCATGGGCGATGTGTTAAAAGGATAAACGT GCACATTAAATCACAACATCCCAATGAAGATCCTGAACGGTTTTTACAGA AATACACAAGTGAGCCAAAAATCACATTCGTGCCGCTTGAAAAAGGACCC ACATTACAGGAGGATTACTTTGACGAAGAGCTTGACCAACTGAACGACGT GGTAAATGACCCTGAAGAggtatttgattttctttttggacGGGTACTAA CTTTATGGACGGGGAAAAACAAGGTTTACTCgcaacaaaaattttataaa atatattgctAGGATGACTAAATGTTCAAACTATGCTCTCTCTAAGCTTG TTATGGTTCAACCGAAATTTAATAGTTTCTTACAGTATCataattacaat ttttttttttaggatgTTCAATGTGTATTTTCAAAGCCAGTTATATATGC ACGACCAATCACAACCCGGGAAAGAAAAATGTTGGCGATTCCCAAAGATT TCAAATATACCTATGACTCTGCGGAGCTGGTACTCAAGGACTTTGCTCGA TATTGCATCTCCCTTGGTAAGAGTGAAAGGCAATCAATACAGCAACGGTG CCGCCTTCAGCACATTTGGGAGACGCTTGATGGCACCATGTGCCTAAAAA GGAACAGGCTAAAAGACCGAGAAGACTTAGAAGATTTATATTTTCTCCCC CTGTTTGGACAGATACTCAAAAATTCGAGGCTACCGACATCAAAGACCGA AAAGCACAACCAAGCCTCTACGGTTGGGTCATGTCTTTTGGCATTGGTGa cattttgtgactttttgttAGTTCGGGACATTTTCATAggtaaataaaac ttttttctcaATTCGAGGCACgggaaatcattttaaaacataaacaaGAA AAGATTAAATTTATTCAACTAAGCTATTCCAGTCTTCACTAATTCATCAT CGATCACTCATCATTTTTAATCTAAGCTAGTGAAGACAAAGTTTTAgttg aataaaatcaaatttcgtGGTATTTATGTTTTAAAAGAACATTTAACTAA AGTGAATCATTTGTTAACATTTATCATTCAAATGCTGACTAGATACTTTT GAGACGaggtttattttattatttttctctaatttgTACAGAGAAATCAA GTCTTGTGTATCTAAAACtagatgtttttatttttagatttaaCACCTAC CCAAATTGGTCGTCTCAAGGATAAAATAAAAGAACTGCTAAAGCGATTAC ATCCCTACGTAATTGCTCGCCAAATAACTGTTTGTACGTGTTTTTCTCAA ATGAATTTTGTTTGTCTTTctcttattcaaaattttacaatcttttcaat ttgaaagaaatatctgattgattcattttttagAGTCGTAACACTCAAAG AAGATTAAATGATTTtccttttatttatttagtcAAGTGGAAGCAGGAAA ATCTGCTCTCCATGGACGATTTCATTCGGATAGGAAGTTCTGACCACGCA ATTGCAATGGAAAAAATCCTAAATGACCCTGACTCATCAGAGATAAAGTT AACAAGGAGCATAGCCATACAGTGCAGGGATCTTTTGATCTTTCTCATTT GTCAAGGTAATGCAGCGAGATCGTCAAATATTTGCGAGATGACAATTGCT GATTTTGAAGAAGCAAAAGAAGCATCCGAATATACTTCAAACAAAAATGC AATGGTAATGGTTTCTGACCTTTACAAGACGTCTATGATCTATGGCGCTA AGTTGATTATTTTACCAGGAGATATCTTCCTTGAAATGCGCAACTACATT AAATTTCTGCGCCCATTGTTGATAACAGATGACACAACCGATGGCCACAA TCGCTACATCTTCACTTCCTCACGagtgaaagttgacaaaaagGCAGAAA AGAAGACGAAATCGGAAACTGGAAAAATGACGTCGTCAAACGTCGCTAAC GCATGCTCATCTGTTTATATTAAGGCGGAAATGGGTGATAAATTCAGGTG AGTTTGCTTTTTGATGCACTCATTCTTTTTTGTAGGTGATAGAGAAATGA GTAATATCCAAATACATTGAGATAATCATTGAATCATTGGTGGGTTAGTT AGCTAATTTTTCCAATTAACAATTGGCGTTTACATCAAGATCTCCAAAAT CTGACGAGTCGTTTGTTGATTATAAAATGAATCAATATGAAAGTTAAAGG GATAgcttttatattgattttttaGGTTTCGAAATTTTGTAACCCTAAAA TAGCTACAGGATGATTTTCACTTTGgtcaatttctttttgtaacGCAAAA ATATGAATTCTTTTCGTTTTATATAGTTGACCTCTTGTCTGACATGAATT TATCTCTCAGGCAACACGTCTTGTGTTTACGTCTTTATCGTTGCTAACAT TATGGGTAACAATCTATAGCTTGTATATTTTATAGCTTCATCGTAAATGG TTGattattcttttaattttacAGCAGCAAACGATGTTCTCCAACGAGAA TTCGTCATGCCGTTGCAACGCAGCTGGCAGGTTATGACAATGAAAAATTG GACGTTGTTGCCAAGGTCTTCATGAAAAATCGAGAAGGAACGACGCAGAA GTTCTATGTCCAATACTGGAATCAAAGAGAAGCCATCCGCTTATCCATGA AGATGTTCGAAAGAACGAGAGGTGAAATCCAAATTGACTTGCCAAAGCCC AACCCAGTCGACAAAGAAGAGTGCATCAAGTGGtatgaagaaaacaaaaa aagaatctcATCGGAACATCGGCTGGATTTGAATGATCGAGATCTTGAGA AGTCCATGTTTGGGGAATTAGGTTAGATCTCTACAAGTGCTATATGAAAA TGAATACTTTTTACGATTTATTTGCTTTATCATTTAATCTGCATCAGCAG GGGTTGGTTTGGAGCAGGCTTATTTACctttaagtgttttaaaaatGCAT ACGATCATTGAACCGAAAAGTTGAGGTTAGTTTCTTCTTCAGtaaatttc attatttccaACTTTTATACTGTTTTAATAGATGAGAGAATTGACGACTT TCAGACGCTGGTTGATGAAGAAGGTATCACATCAATTTCTATTAATCGTT ACAACATATTTTTCTTGGAGCTTATTGTTTTAAGCTATGAAAtctcaaaa actttctttgtgATCGATATAATTGAGGCTGGACATTTCATGAGATGTAC AAAGTCACATTGTGTTTCAATAGACATTGGATGGATTATTTAGGGTTGAA TTCACAAATATTTCCATAAAATGATTAATTTAAAGTCCATAAATGAAACC GTTCTGCTTTTTATATGTCAGTAACAGACTTGAAAGAACCTCTAAATGAA GCAGAAGATTTAATTAATTCAGCAACCTCATCAGGATCAGACCGAAAAGA GCTTGAGATTGAAACAGATGAGCCAGCAGATTTAGAAAAAGGTACTTTTT CTTTAATATATACCACTACGATAgaaaagtgaaaacaaaaagCATGACTG AATAAAACTAAAGATGAAGTGAGTTTGACAATACGAAATCatttatttct taaatttgCATTTCACTAATATTTTCAGGAATATTTGATTATATAGCTAT GAGTAGAGATATTCTGTTTTCTCTATATATCAGTAACAGACTCGAAAAAA CATCCAACGGAAGCAGAAGATTCTGCAAAAACAGGAACCTCATCAGAATC AGAACcacaaaaacatcaaattgaAACATATGAGAAAACAGATTTAGCAG AAGGTACTTTGCTTTTTAATGTCTACATCTAAGGTAACAAAGTGTGAACA CGAAAGGCATGATCGAATCAAACaagaaataaatttgttttCGTTAATTT GTTTTGTCATGATGAGGAGGGTCAAGCGCATTTGACAATACGAAATCTTA ATTGTGTTTTAAATAGGCATTGGATTGATTATTTAGGTTTGAATTCATAC TATGACATATTTATCAAGTATTTCTAGGAATTGTTTGCTGATAAAGATAC GTGTGAAAATGTTCCGTTTTTTCTATTTACCAGCTACAACATCAGTAGAA TTACAAATGGAAGTAGAAGATCttgcaaaagaaaaacaagGTGCGaagtt tttattactttttttgtttgttcactttttaaaaagtatttcgaGTTTTC ATAACGtctaaaattttgtttgttaCGAAAAAACGTTGACAaataaattg attaaaaacaattttcaaaaagacattCACTTTTTTGGATATATACTTTT TAGGATTGGATAGGCAAATTTTCATACATAAATACGCCAAATGCCCTTAG TTAGAAGAGACGGAAAAACTTGAACATGtaacattagtttttttttcgaa ttaattAAATCACATGAGACTGATGTCTAGTTCTTTTAAATAACGTTTGT CCTTCTTATTTCCTAAAAGatgattttttacaatattatcACTTATTAAT AACGCAATCAGCTGTTTGGTCATAGCAAATTTTAAGGAATTGCTCTCGAC AGTGTAAATCTTGTTCATTTAGGACCATTGTAATGACACGTGATCCTTTT TTTATATCAGCTGTGGAAACTACAGAAACCAGCACTAAAGAACCAGATTT TCAAATAGAAACAGTCAACCaacaatcaaaatcaagaaaatgcCTTGTTA AAATGTTACCCATCAAAATAAACGAGACACAACCTATCACCAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00036046TCONS_00036046Clytia hemisphaericatranscript
TCONS_00036047TCONS_00036047Clytia hemisphaericatranscript
TCONS_00036048TCONS_00036048Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00036047-proteinTCONS_00036047-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001408supercontigsc0001408:83818..90310 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.66 0.59 0.31 0.31 4.39 3 4.11 3.12 1.51 2.65 1.51 1.62 1.43 1.33 2.01 1.95 1.41 1.78 1.17 2.33 1.44 1.56 0.7 0.98 0 0 0.68 0.31 1.08 0.56