|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036042 ID=TCONS_00036042|Name=TCONS_00036042|organism=Clytia hemisphaerica|type=transcript|length=836bp
GCTCTTCGAAATAGTTGAGGACTTGCTGTGGTGCAGCCTCCTTAAAGTTT
GCTTCACGATTCTCATACTGTTCTTTGTTTCTTGAGTAGGCCATTCCCTG
GAACAACTCAGCCAGGACTTCCACAGTGGCATTAGTAATCCCCATTTTTG
AGGATGTTACTTCTCTTCGGAAAGATCTCAATGAATGATATAGGCATATC
AACAATTGTGCATTAGGAAATATTTCCTTGAAAACTTTCCTTTCAACAAT
GTCTTTATCTGCCATGATGACTCTCACTTTAATGGAAGCTGCTTCATTGT
TCTGTCTAAAGGAGTCAAGCACCCATCTGAGAGTTTCCTCATCTTCAAAG
GCAAGAAGACTGACTCCTATTATCTCTGTCATTCCCAAAGAATCTTCAAC
AAATAAACTGCTAGGTTGAGATCAGTCAGTCGATGGGTTGcgtcaacaaa
aaatacCGTATTTTTCTCTGAGAAGGTCACAAAAGACTTCAAGGCTATTT
CTTGTATCTTTCTTCTTGGCTTGTTGCTCAAGATTGCTTAAATCTTTAAG
TAATACAATCTTTTTGGTCTCGTTCATAACTTTGTTTTGGACAAGTTTCT
TGTTTGCATCCAGTTTCAATAATTCCTGAACATCAGCTTGGTCTTCTGCT
GATAATTTCCTCCGTTTTGCCAAGTGTTGGAAGAGTTCctataaaacaaa
atatttacattctcaatcatcaaaatatttaagtgttattgccgacccaa
aaaaatatcagcgttttgattggtcgagagcatcgagatatttgcgatat
ttcatatttctctagtatggaaatatgaccgcgttg Run BLAST on NCBI transcript from alignment at sc0001406:48263..51276- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036042 ID=TCONS_00036042|Name=TCONS_00036042|organism=Clytia hemisphaerica|type=transcript|length=3014bp|location=Sequence derived from alignment at sc0001406:48263..51276- (Clytia hemisphaerica)
GCTCTTCGAAATAGTTGAGGACTTGCTGTGGTGCAGCCTCCTTAAAGTTT
GCTTCACGATTCTCATACTGTTCTTTGTTTCTTGAGTAGGCCATTCCCTG
GAACAACTCAGCCAGGACTTCCACAGTGGCATTAGTAATCCCCATTTTTG
AGGATGTTACTTCTCTTCGGAAAGATCTCAATGAATGATATAGGCATATC
AACAATTGTGCATTAGGAAATATTTCCTTGAAAACTTTCCTTTCAACAAT
GTCTTTATCTGCCATGATGACTCTCACTTTAATGGAAGCTGCTTCATTGT
TCTGTCTAAAGGAGTCAAGCACCCATCTGAGAGTTTCCTCATCTTCAAAG
GCAAGAAGACTGACTCCTATTATCTCTGTCATTCCCAAAGAATCTTCAAC
AAATAAACTGCTAGGTTGAGATCAGTCAGTCGATGGGTTGCGTCAACAAA
AAATACATCTGGGTATGCTTTAAAATTAGCTTTCATTTCTTCATCTTGGA
AAAAAACTCCGGTGAACACATCACTTTCATTTGATGACACATGCACGTTG
CAGCCTGAGAGTATAGAAACGTAAAAGTAAAAGTAACAAGCAACATGCTG
AATGGACCTACCTAATGATTAACATCAGATGAAAATAAGAAAAAAGTGAC
AATAATTGTACAAAAATTCAGAATGGAAAAATANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNAAAATTATGAGTCAACATTGAGAAAAGCTATATTTT
CTTATTTGGTTAAAAGGAATTTCCCCAAAATACGAAAATCCGTCTTTTAA
GGCGAGTAAGAATTTTCCAGGAAAAACCATTTCAGCCATTCTTTATAGAA
TCTTGCCCTCCATCTTTGTACAAAAAATCAGAAAAAAGTAATGACAGGAT
TTTGCACAAAGTCCAAAAAACCCTATTTTTAGGCAGTTTTTGGCCCAAAT
TTGCCCAAATATATTTTTTTTCGAAAATCGGGCTCAGACACATTTTAGGC
ATTGCCATTTTGCATCATTGTGCAAAAAATCAGAGAAAAATAATGAGTCA
ACATTGAGAAAAGCTATATTTTCTTATTTGGTTAAAGGGAAATTCCCCAA
AATACTGAAAATCCGTTTTTTAAGGCGAATAAGAATTTTCCGGGAAAAAC
CACTTCAGCCATTCTTTAGAGAATCTTGCCCTTCATCTTTGTACAAAAAA
TCAGAAAAAAGTAATGACAGGATTGTGCACAAAGTCCAAAAAACCCTATT
TTTAGCTAGTTTTTGGCCCAAATTTGCCCAAATAAATTTTTTCTCAAAAA
TCAGGCTCCGTCACGTTCTGGGCATTGCCATTTTGCATCATTGTGCAAAA
AATCAGAAAAAACTAATGAGCCAATCCTGAGAAAAGCTGGTAACAGACGG
ACGGACGGACCGACGGACGGACGGACATGGGTTAATTTATAGAACCTCCA
CCGGGGTACCCGGAGGTATGTCCAAAAAAGAAGTCTAATACCTTATTGGT
GTAATTTTGTTGTTGTTGTTGTTACGGTTATAAGGGCGGACGTAAGGGGC
CAGAGTTAAACTAGGGCTGGGTTAAAAATAAAAAGAATTTAGCTTTGGCC
AATTCAAATTTTCTATAGGGGTCAGGACACCCCTTATTAAGGATTATGGT
CTTTGATTTGTTACTCCTTTGCAAAAAGGGTTTTTTCTTTTTAAGTAATT
TACTAAAAAAACAGTTAAAGAAATTTGGAAGTACCTGTGTAATACTAAAA
GAATTCAGATACTTAGGTTTATGGTAGAAAACTGGCACACTAAGCAAAAT
TTTACAAAGAACTAGAACCCACTTAAAAACAAGACCCCTTAAAGTAACAA
GGCTCTCCTTATAATAAATGACAAATCTATGGTTTCTCTTAATTCTAAAA
CTGTTGAACATGCTATCCCCACTAGCTCAATTTTAATATCTTTAACTCTG
TTTTCAGAAGTACAATCGACACAATTAAGTTCCCCCATTCATGAAAATTT
GAAATTCTTTAACATCCTCTTGTTTATTTTGGACTTAATTACAAAAATAC
CTTAAGTGGATAATTTTTGGTGTGGATTTAATTTGGTGATTTGCCAAAAC
ATGATTTTTGGTGAGAATTTAATTTGGCGATAGATCAATTTTGTAAAATT
TGGTGGGGATTTAATTTGGCAAATTGCAAACTTTGAGACACTAAAATGGG
TAAAATTTACTATAAGTATAACATTTACTAAAATGTTGTAATTTTTTACA
TAATATTCTTTTTGTTAAATTTGGCGGGGATTTAATTTGGCAAGGATTGC
ATTTGGCGAATTTTGTTGAAATTTGCCAAATTTGCCAAAATTAATCCCCG
CCAAAATTTATCCACTTAAGGTAATGTACGGTTTTGTGAGAAATGCCCCT
CAGAGAAATTTTTGAGAAATTAAACAAATAGTTAAACGTGCATATTTATC
CCTGTAAAAATGTTTAAAAAGTAAAAGTACTTACCGTATTTTTCTCTGAG
AAGGTCACAAAAGACTTCAAGGCTATTTCTTGTATCTTTCTTCTTGGCTT
GTTGCTCAAGATTGCTTAAATCTTTAAGTAATACAATCTTTTTGGTCTCG
TTCATAACTTTGTTTTGGACAAGTTTCTTGTTTGCATCCAGTTTCAATAA
TTCCTGAACATCAGCTTGGTCTTCTGCTGATAATTTCCTCCGTTTTGCCA
AGTGTTGGAAGAGTTCCTATAAAACAAAATATTTACATTCTCAATCATCA
AAATATTTAAGTGTTATTGCCGACCCAAAAAAATATCAGCGTTTTGATTG
GTCGAGAGCATCGAGATATTTGCGATATTTCATATTTCTCTAGTATGGAA
ATATGACCGCGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036042-exon-sc0001406-1575043694:50821..51276 | TCONS_00036042-exon-sc0001406-1575043694:50821..51276 | Clytia hemisphaerica | exon |
| TCONS_00036042-exon-sc0001406-1575043694:48263..48642 | TCONS_00036042-exon-sc0001406-1575043694:48263..48642 | Clytia hemisphaerica | exon |
| TCONS_00036042-exon-sc0001406-1510915933:50821..51276 | TCONS_00036042-exon-sc0001406-1510915933:50821..51276 | Clytia hemisphaerica | exon |
| TCONS_00036042-exon-sc0001406-1510915933:48263..48642 | TCONS_00036042-exon-sc0001406-1510915933:48263..48642 | Clytia hemisphaerica | exon |
| TCONS_00036042-exon-sc0001406-1491911889:50821..51276 | TCONS_00036042-exon-sc0001406-1491911889:50821..51276 | Clytia hemisphaerica | exon |
| TCONS_00036042-exon-sc0001406-1491911889:48263..48642 | TCONS_00036042-exon-sc0001406-1491911889:48263..48642 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001406 | supercontig | sc0001406:48263..51276 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR018289 | MULE_transposase_dom |
Blast
The following BLAST results are available for this feature:
|
