TCONS_00036037 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036037
Unique NameTCONS_00036037
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length790

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036037 ID=TCONS_00036037|Name=TCONS_00036037|organism=Clytia hemisphaerica|type=transcript|length=790bp
agaGAGTATGCGTTCCAACTTGAAAGAGAAGGAATTCCTACTTCGtaagg
agtaggacccattccccagtggggagggctcatatcatcaTCATATCATA
TCATCTTTTTCAGCTTCCAAAGATGTTAACACTAATTCTCTAGATGATAT
TTTTGATGCAAGAACAGAGATTTCATTTAAAGACGATAACTCGCAAGATG
ATAGTGATGATGCCGGAACGGAGATCTCATTTGTGGAGGAAAATGTAATG
ACCTTTGGATTTGACAGTGATGGCGACGAATTTAGACCCAGCCAAGTTTT
CTCTCACAAAGATCCACACGCCGGAGATTTGCGAATTAATGATGCATCGA
ATACAGACATCAACAGCTGCATATCCAACCAATTTAACTCTCAAGAAAGT
CGAACCAATAATGATGAAGATACCGTTGATgcagAACCTGCGTCAGCAGA
TGACcaattgaaaattgttttgatggACCTGTTTGGCTATGACTTCGTAA
TCGATTTTCTCAACCAACACAGCTCTATCGATGAAAGACAGATTGCATTG
CTAAAAGAAGCAAAGTGGGTCTCACGAAGTGTTTTAAAGTTCGGCATTTC
ATGCCTAGAGAAATACACAGACAACCTTGGCGTTATAGAGGAtttgattg
aaaagaagaagaagcatCAAGTATGTGACAAATGTCATAGAAAATTGGCA
AAGCCTATGGAATGTCAGCACTGCTTCAAACAAATGCATTCGAATTGCTT
TGGGAAAGCAGACCACTGTGTTTGTTGTGAACTATTAAAG
Run BLAST on NCBI

protein sequence of TCONS_00036037-protein

>TCONS_00036037-protein ID=TCONS_00036037-protein|Name=TCONS_00036037-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MTFGFDSDGDEFRPSQVFSHKDPHAGDLRINDASNTDINSCISNQFNSQE
SRTNNDEDTVDAEPASADDQLKIVLMDLFGYDFVIDFLNQHSSIDERQIA
LLKEAKWVSRSVLKFGISCLEKYTDNLGVIEDLIEKKKKHQVCDKCHRKL
AKPMECQHCFKQMHSNCFGKADHCVCCELLK
Run BLAST on NCBI

transcript from alignment at sc0001406:55412..57371+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036037 ID=TCONS_00036037|Name=TCONS_00036037|organism=Clytia hemisphaerica|type=transcript|length=1960bp|location=Sequence derived from alignment at sc0001406:55412..57371+ (Clytia hemisphaerica)
agaGAGTATGCGTTCCAACTTGAAAGAGAAGGAATTCCTACTTCGtaagg
agtaggacccattccccagtggggagggctcatatcatcaTCATATCATA
TCATCTTTTTCAGCTTCCAAAGATGTTAACACTAATTCTCTAGATGATAT
TTTTGATGCAAGAACAGAGATTTCATTTAAAGACGATAACTCGCAAGATG
ATAGTGATGATGCCGGAACGGAGATCTCATTTGTGGAGGAAAATGTAATG
ACCTTTGGATTTGACAGTGATGGTGAGTATACAGTGCATGGCAAATTTTC
CGCCTGTAGACATAGATGTGTCCAGTTCAGATTTCAAGCTTGGGTTTCTG
TCCTGATAGCATGCATTTTACGAAAGAATTTTGTTATAAATTGGTGTATa
gttattctcaacttcagttgagctagaatctgacaatgtgtgtgtgtgtc
tgtctgtctctctctctgtctgtctgtcacaaaaactttagggcagcctg
gagactccaaaaatggtccgatttggctgaaatttagcacaagtgtcctt
gggtgaatatctgagggtgttactttcatatttcaaaaatttagattttt
ggggcctgggacgaGTTTCCACTATAATTCAATCTGAATATCTACAATTG
GGCCTCTAAATAGTTGGgaaaatactgaagttgagcccagtgcgttgcac
ACGTTCGACTATAGTAGTAGGCCTGATTAGTGCAATTATTAGGGCAGTTC
TGTAAATAATTTTAACCAATGCTTTTCTCATGTTAAATGTTTTTCATGAA
CTTAATATTGCGGTTTTGGTTCAAATGAGCAAAAACCTATAAATTTATTT
CCCTCAAAAATTAGTTGCCTTTAAAGGTAACGTCTGTCCATTTCCTTTTC
TGTAGGCGACGAATTTAGACCCAGCCAAGTTTTCTCTCACAAAGATCCAC
ACGCCGGAGATTTGCGAATTAATGATGCATCGAATACAGGTATAATAATG
GGATGTAGCTAACTTGTTGACCATGACAAATATTCAAACATATGTATACC
AAAACTGTTGTAAATCTAAGTCTGACCCTTAGTGCTGGGTTTTGTTATTC
GAAactgtcaaaagaaaaatggttaAGTAAATGATTAGCATgcgaaaaaa
tgtttgaaacaaCAGTTTGGTGGTATAGAATCGCATCAAGCCAGCAAATT
TCGTAAAGGGGTctccaaatatttttcattcttGTCTTACTGCTTAGGCA
GGTGATCTTAACCCCTCTAGAAATTACAGTATTCGTTTTTATTTATCTTC
ATTTACAGACATCAACAGCTGCATATCCAACCAATTTAACTCTCAAGAAA
GTCGAACCAATAATGATGAAGATACCGTTGATgcaggtacacgctttttt
ataatgataatatcttttttttttaatatcagTTTGAAAAGTGTCTCAAA
CTCACAAATAGATCATTCAATATGTTTCTAAAAAGGGCAAGTCTTTTCAC
CTGCAAACCTCTTTGTTCATTCCTCGTCGCTACCAGTCTATACCAGTAAG
AAATACAAAATTCTGCTTCAGCGAATTCCATAACTAAACGAATTTCTTTC
ATAGAACCTGCGTCAGCAGATGACcaattgaaaattgttttgatggACCT
GTTTGGCTATGACTTCGTAATCGATTTTCTCAACCAACACAGCTCTATCG
ATGAAAGACAGATTGCATTGCTAAAAGAAGCAAAGTGGGTCTCACGAAGT
GTTTTAAAGTTCGGCATTTCATGCCTAGAGAAATACACAGACAACCTTGG
CGTTATAGAGGAtttgattgaaaagaagaagaagcatCAAGTATGTGACA
AATGTCATAGAAAATTGGCAAAGCCTATGGAATGTCAGCACTGCTTCAAA
CAAATGCATTCGAATTGCTTTGGGAAAGCAGACCACTGTGTTTGTTGTGA
ACTATTAAAG

Coding sequence (CDS) from alignment at sc0001406:55412..57371+

>TCONS_00036037 ID=TCONS_00036037|Name=TCONS_00036037|organism=Clytia hemisphaerica|type=CDS|length=2172bp|location=Sequence derived from alignment at sc0001406:55412..57371+ (Clytia hemisphaerica)
ATGACCTTTGGATTTGACAGTGATGGCGACGAATTTAGACCCAGCCAAGT
TTTCTCTCACAAAGATCCACACGCCGGAGATTTGCGAATTAATGATGCAT
CGAATACAGACATCAACAGCTGCATATCCAACCAATTTAACTCTCAAGAA
AGTCGAACCAATAATGATGAAGATACCGTTGATgcagAACCTGCGTCAGC
AGATGACcaattgaaaattgttttgatggACCTGTTTGGCTATGACTTCG
TAATCGATTTTCTCAACCAACACAGCTCTATCGATGAAAGACAGATTGCA
TTGCTAAAAGAAGCAAAGTGGGTCTCACGAAGTGTTTTAAAGTTCGGCAT
TTCATGCCTAGAGAAATACACAGACAACCTTGGCGTTATAGAGGAtttga
ttgaaaagaagaagaagcatCAAGTATGTGACAAATGTCATAGAAAATTG
GCAAAGCCTATGGAATGTCAGCACTGCTTCAAACAAATGCATTCGAATTG
CTTTGGGAAAGCAGACCACTGTGTTTGTTGTGAACTATTAAAGATGACCT
TTGGATTTGACAGTGATGGCGACGAATTTAGACCCAGCCAAGTTTTCTCT
CACAAAGATCCACACGCCGGAGATTTGCGAATTAATGATGCATCGAATAC
AGACATCAACAGCTGCATATCCAACCAATTTAACTCTCAAGAAAGTCGAA
CCAATAATGATGAAGATACCGTTGATgcagAACCTGCGTCAGCAGATGAC
caattgaaaattgttttgatggACCTGTTTGGCTATGACTTCGTAATCGA
TTTTCTCAACCAACACAGCTCTATCGATGAAAGACAGATTGCATTGCTAA
AAGAAGCAAAGTGGGTCTCACGAAGTGTTTTAAAGTTCGGCATTTCATGC
CTAGAGAAATACACAGACAACCTTGGCGTTATAGAGGAtttgattgaaaa
gaagaagaagcatCAAGTATGTGACAAATGTCATAGAAAATTGGCAAAGC
CTATGGAATGTCAGCACTGCTTCAAACAAATGCATTCGAATTGCTTTGGG
AAAGCAGACCACTGTGTTTGTTGTGAACTATTAAAGATGACCTTTGGATT
TGACAGTGATGGCGACGAATTTAGACCCAGCCAAGTTTTCTCTCACAAAG
ATCCACACGCCGGAGATTTGCGAATTAATGATGCATCGAATACAGACATC
AACAGCTGCATATCCAACCAATTTAACTCTCAAGAAAGTCGAACCAATAA
TGATGAAGATACCGTTGATgcagAACCTGCGTCAGCAGATGACcaattga
aaattgttttgatggACCTGTTTGGCTATGACTTCGTAATCGATTTTCTC
AACCAACACAGCTCTATCGATGAAAGACAGATTGCATTGCTAAAAGAAGC
AAAGTGGGTCTCACGAAGTGTTTTAAAGTTCGGCATTTCATGCCTAGAGA
AATACACAGACAACCTTGGCGTTATAGAGGAtttgattgaaaagaagaag
aagcatCAAGTATGTGACAAATGTCATAGAAAATTGGCAAAGCCTATGGA
ATGTCAGCACTGCTTCAAACAAATGCATTCGAATTGCTTTGGGAAAGCAG
ACCACTGTGTTTGTTGTGAACTATTAAAGATGACCTTTGGATTTGACAGT
GATGGCGACGAATTTAGACCCAGCCAAGTTTTCTCTCACAAAGATCCACA
CGCCGGAGATTTGCGAATTAATGATGCATCGAATACAGACATCAACAGCT
GCATATCCAACCAATTTAACTCTCAAGAAAGTCGAACCAATAATGATGAA
GATACCGTTGATgcagAACCTGCGTCAGCAGATGACcaattgaaaattgt
tttgatggACCTGTTTGGCTATGACTTCGTAATCGATTTTCTCAACCAAC
ACAGCTCTATCGATGAAAGACAGATTGCATTGCTAAAAGAAGCAAAGTGG
GTCTCACGAAGTGTTTTAAAGTTCGGCATTTCATGCCTAGAGAAATACAC
AGACAACCTTGGCGTTATAGAGGAtttgattgaaaagaagaagaagcatC
AAGTATGTGACAAATGTCATAGAAAATTGGCAAAGCCTATGGAATGTCAG
CACTGCTTCAAACAAATGCATTCGAATTGCTTTGGGAAAGCAGACCACTG
TGTTTGTTGTGAACTATTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021181XLOC_021181Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036037-exon-sc0001406-1491911889:55412..55683TCONS_00036037-exon-sc0001406-1491911889:55412..55683Clytia hemisphaericaexon
TCONS_00036037-exon-sc0001406-1510915933:55412..55683TCONS_00036037-exon-sc0001406-1510915933:55412..55683Clytia hemisphaericaexon
TCONS_00036037-exon-sc0001406-1575043694:55412..55683TCONS_00036037-exon-sc0001406-1575043694:55412..55683Clytia hemisphaericaexon
TCONS_00036037-exon-sc0001406-1491911889:56317..56400TCONS_00036037-exon-sc0001406-1491911889:56317..56400Clytia hemisphaericaexon
TCONS_00036037-exon-sc0001406-1510915933:56317..56400TCONS_00036037-exon-sc0001406-1510915933:56317..56400Clytia hemisphaericaexon
TCONS_00036037-exon-sc0001406-1575043694:56317..56400TCONS_00036037-exon-sc0001406-1575043694:56317..56400Clytia hemisphaericaexon
TCONS_00036037-exon-sc0001406-1491911889:56720..56797TCONS_00036037-exon-sc0001406-1491911889:56720..56797Clytia hemisphaericaexon
TCONS_00036037-exon-sc0001406-1510915933:56720..56797TCONS_00036037-exon-sc0001406-1510915933:56720..56797Clytia hemisphaericaexon
TCONS_00036037-exon-sc0001406-1575043694:56720..56797TCONS_00036037-exon-sc0001406-1575043694:56720..56797Clytia hemisphaericaexon
TCONS_00036037-exon-sc0001406-1491911889:57016..57371TCONS_00036037-exon-sc0001406-1491911889:57016..57371Clytia hemisphaericaexon
TCONS_00036037-exon-sc0001406-1510915933:57016..57371TCONS_00036037-exon-sc0001406-1510915933:57016..57371Clytia hemisphaericaexon
TCONS_00036037-exon-sc0001406-1575043694:57016..57371TCONS_00036037-exon-sc0001406-1575043694:57016..57371Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036037-proteinTCONS_00036037-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001406supercontigsc0001406:55412..57371 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0742125	0.141926	0	0.0650719	0	0.0734968	0.0517321	0.191213	0.556787	0.0408797	0.332443	0.0421752	0.104021	0.0372102	0	0	0	0	0	0	0.0700139	0	0	0.0585115	0.0837298	0	0.0682928	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036037 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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