TCONS_00036033 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036033
Unique NameTCONS_00036033
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length852

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036033 ID=TCONS_00036033|Name=TCONS_00036033|organism=Clytia hemisphaerica|type=transcript|length=852bp
TCACACTTCTTCTGACTCAAGCGTTTTATCATTGTCAAGGGCAATATTGG
TACAATATGCTTTCTCACACATTCttgattttttagaaaagtttCCTAAA
TTTTCTGTTCTTGTCAAAAATGTCCCCCATTTTCCTATCTTTGGCGAAAg
aaataaaataacatttttcagtttttttcattttccgatttttggaaaac
atttccACGATTTCCCCTGGAGAGTTGGGCTAAGATTTTGTGTttgatta
gagatttttatcACATGTTGGCAGTTAGTAGGTGTACTTGCCAAAGAGAG
TGAGAGTTTGCCAAGGAGAGCGAGATGCAGAGATGGATTGATGGATGGAG
TTAAGATGGGCCACTGTTAAGATTTGACTATGTACAGAACATATTCAGAT
TATGATCTTCTCTGAAagaatagaaaattttaatctttttatcAGGTATG
ATGTTACAAATAAATTACTTACATTTGAGGCAAGGATTTGTTGCTCCTGT
TGATCTGCCAAAGTTGCCCAGtcgtccgccattttgaaaatttttgcttg
gaaaagcgaGCGAACCATGCGTATTGTCAAAGGGCGTTAGGAGGGCGAAA
AATTTAGGGGCGTTTAAAATCTAACAACCTCGATCCCAAATTGTTTTGTG
GTTGAAATTTTAAACTAAGAGAGACTGAAGGATCTGAAATAATGATTTCC
TGTAGATATTGATGACGTTAGAATTCTAGATTCTTCAAGCTGAATTGTCG
AGCAACCAAGGTATGgtggagaaaataaattttcatccGTAGTTCATTTT
TGGAGCCTAAGAACGAGGTTGTTGATTTCCGAGAAAAGTAAATATAAAAG
GG
Run BLAST on NCBI

transcript from alignment at sc0001405:80295..81146

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036033 ID=TCONS_00036033|Name=TCONS_00036033|organism=Clytia hemisphaerica|type=transcript|length=852bp|location=Sequence derived from alignment at sc0001405:80295..81146 (Clytia hemisphaerica)
CCCTTTTATATTTACTTTTCTCGGAAATCAACAACCTCGTTCTTAGGCTC
CAAAAATGAACTACggatgaaaatttattttctccacCATACCTTGGTTG
CTCGACAATTCAGCTTGAAGAATCTAGAATTCTAACGTCATCAATATCTA
CAGGAAATCATTATTTCAGATCCTTCAGTCTCTCTTAGTTTAAAATTTCA
ACCACAAAACAATTTGGGATCGAGGTTGTTAGATTTTAAACGCCCCTAAA
TTTTTCGCCCTCCTAACGCCCTTTGACAATACGCATGGTTCGCtcgcttt
tccaagcaaaaattttcaaaatggcggacgaCTGGGCAACTTTGGCAGAT
CAACAGGAGCAACAAATCCTTGCCTCAAATGTAAGTAATTTATTTGTAAC
ATCATACCTgataaaaagattaaaattttctattctTTCAGAGAAGATCA
TAATCTGAATATGTTCTGTACATAGTCAAATCTTAACAGTGGCCCATCTT
AACTCCATCCATCAATCCATCTCTGCATCTCGCTCTCCTTGGCAAACTCT
CACTCTCTTTGGCAAGTACACCTACTAACTGCCAACATGTgataaaaatc
tctaatcaaACACAAAATCTTAGCCCAACTCTCCAGGGGAAATCGTggaa
atgttttccaaaaatcggaaaatgaaaaaaactgaaaaatgttattttat
ttcTTTCGCCAAAGATAGGAAAATGGGGGACATTTTTGACAAGAACAGAA
AATTTAGGaaacttttctaaaaaatcaaGAATGTGTGAGAAAGCATATTG
TACCAATATTGCCCTTGACAATGATAAAACGCTTGAGTCAGAAGAAGTGT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021178XLOC_021178Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036033-exon-sc0001405-1491911889:80295..81146TCONS_00036033-exon-sc0001405-1491911889:80295..81146Clytia hemisphaericaexon
TCONS_00036033-exon-sc0001405-1510915933:80295..81146TCONS_00036033-exon-sc0001405-1510915933:80295..81146Clytia hemisphaericaexon
TCONS_00036033-exon-sc0001405-1575043694:80295..81146TCONS_00036033-exon-sc0001405-1575043694:80295..81146Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001405supercontigsc0001405:80295..81146 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.5731	14.9039	8.68366	7.33433	0.595256	0.764367	0.709366	0.53128	5.25396	5.81677	6.5403	6.83484	6.23822	8.23144	6.7047	8.4392	7.08281	5.60394	2.05284	2.45503	11.7896	9.75773	11.8302	9.8351	0.473915	0.264348	4.69069	3.06821	7.5938	8.79758
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036033 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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