TCONS_00035998 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035998
Unique NameTCONS_00035998
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length665

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035998 ID=TCONS_00035998|Name=TCONS_00035998|organism=Clytia hemisphaerica|type=transcript|length=665bp
AAGAAGCATTAGATTTCGCTGTTGAAAAACGTCGCTTTCTAATTAATCGA
CAAATTCCAAATGATGCAATGAAAGAATGAGATTTGACACTTGTAAATTa
taacattgtttttataagctAGAAATATATTACCATCAAGCAATAAATAT
TTTCGTTTTCTTAGTTCTTTTTATTGCCTCTACGATTTTAGCTCAAAGTA
GTGTTACATAGGGTTTTTGGGTTATAGTAATAACTTAAATACATTCGTTT
ACACATCTTTTATTTGGTGTATCCACGTTCAATTTTGTTACCaatgttgt
tttgtttcttcTCAAATAAACTATTTCATTCATTCCCTATTtaacaatat
aaaatttttgtaatCTTAGATTTTTAATCCATCGATCATCAGCTAAGAGT
TCCAACTTTATATACTCAATTTCTCCATCCATCCAGCGTACTATTACAAA
TATCGTTTGATTCCCTATCACTAACAACTTTCGTGAAGTTCTTTCGTGAA
CTTCAATGAACACTTGTTTCCAGTGGCTAGACAATAGTGGTAATTTAATT
GACTCTGGGTACTCCTCTGAGCCTCCTTCACAAATTTCCTTTGGACTTCA
AATGTTGGGTCGTTGAATTACGATAAAAAATTCCTCCTTGTCTTTATTAA
AGTAGTTTTCAACAT
Run BLAST on NCBI

transcript from alignment at sc0001399:42667..43331

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035998 ID=TCONS_00035998|Name=TCONS_00035998|organism=Clytia hemisphaerica|type=transcript|length=665bp|location=Sequence derived from alignment at sc0001399:42667..43331 (Clytia hemisphaerica)
ATGTTGAAAACTACTTTAATAAAGACAAGGAGGAATTTTTTATCGTAATT
CAACGACCCAACATTTGAAGTCCAAAGGAAATTTGTGAAGGAGGCTCAGA
GGAGTACCCAGAGTCAATTAAATTACCACTATTGTCTAGCCACTGGAAAC
AAGTGTTCATTGAAGTTCACGAAAGAACTTCACGAAAGTTGTTAGTGATA
GGGAATCAAACGATATTTGTAATAGTACGCTGGATGGATGGAGAAATTGA
GTATATAAAGTTGGAACTCTTAGCTGATGATCGATGGATTAAAAATCTAA
GattacaaaaattttatattgttaAATAGGGAATGAATGAAATAGTTTAT
TTGAgaagaaacaaaacaacattGGTAACAAAATTGAACGTGGATACACC
AAATAAAAGATGTGTAAACGAATGTATTTAAGTTATTACTATAACCCAAA
AACCCTATGTAACACTACTTTGAGCTAAAATCGTAGAGGCAATAAAAAGA
ACTAAGAAAACGAAAATATTTATTGCTTGATGGTAATATATTTCTagctt
ataaaaacaatgttatAATTTACAAGTGTCAAATCTCATTCTTTCATTGC
ATCATTTGGAATTTGTCGATTAATTAGAAAGCGACGTTTTTCAACAGCGA
AATCTAATGCTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021155XLOC_021155Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035998-exon-sc0001399-1491911889:42667..43331TCONS_00035998-exon-sc0001399-1491911889:42667..43331Clytia hemisphaericaexon
TCONS_00035998-exon-sc0001399-1510915933:42667..43331TCONS_00035998-exon-sc0001399-1510915933:42667..43331Clytia hemisphaericaexon
TCONS_00035998-exon-sc0001399-1575043694:42667..43331TCONS_00035998-exon-sc0001399-1575043694:42667..43331Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001399supercontigsc0001399:42667..43331 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0778021	0.170762	0.0880915	0.11838	0.226955	0.248729	0.790691	1.85974	0.607017	0.260294	0.179013	0	0.397917	0	0.146664	0.0474104	0.241916	0.0706947	0.133264	0.416236	0.861586	1.03007	0	0.297151	0.527113	0.2434	0.115724	0.280382	1.03862	0.967969
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035998 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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