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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035972 ID=TCONS_00035972|Name=TCONS_00035972|organism=Clytia hemisphaerica|type=transcript|length=1893bp
ATAGTAGAAACTCTAATGGTCATCAAGTTGAAGGGAGCATTGGAACTTCA
GTTCTTTTGAAGTTTGAAAGCATTAAAGAGATTAAACAATATATAAGGTC
AGAGTATAGTAATACCAatctttttaacataatttatctaaaaactgatt
ttcacAATGAGAAAGATATAAAAAGTACAATTTTGACAAAAGTCTCACGC
AGACAATTAAATGCTTCTGTTAAAAGGTATCGGGAAAAAAGGAAAGGTAC
TACAAAGCATgaacaagaaaagaaaaacaaaagacaaCGTCGAGAATCGA
ATAAAgggtcagaaaaacatgaaaatgaaaaagaattaaaGCGCATGCGA
AGAGAATTGTGTAAAgggtcagaaaaacatgaaaatgaaaaagaaagaaa
gcgtAAAGATTACAAAGCTAACAAGAAACTTCATGGAGGAAAAAGGGTTA
GGAACTTCAGACAGAAAAAACAAGAGGGCCCTTCCTACATCTGTGTAATG
TGTAACCGCTGTATGTACAAAAAATCTGTATTTGGTTTTGATGAACAAAA
GTACTCATTGATCAACTTTGAAGAAATAGAACATTTTAATCCTGTAACCT
CGTTCGATGGTAATTTCCACGTATGCACAACCTGTCATAGAAGATTAACG
AAGGGAGAAATCCCATGTCAGTCTGTTATTAACaagcttcaaatttttga
tctCCCAGATAATCTAAATGATATACGAAAACTGGAAAGAATTTTAGTGG
ctcaaagaattttattttctaaagttttgaTAATGCGTAAAGGAGAATTC
CCTAAATTGCAAGGTGCAATATGCAATGTTCCCATTGAAACACCAGGTGT
ATGCAAAGTACTTCCTAGAGGAAGTGATAGTAGTGGGGTAATAAATgttg
aattaaaaagaaagatatccTACAAAAACCCTTTTATTTCACAGCAAGTA
AGacgacaaaaagtttttgaaactttggactttttagtgaataaCCCTGG
TAAATCAACTCGGGTTCAATTTCGGGTGTATCAGGTTCACCCGACCTCAC
CTGAAATTGCTATTTTTGAAAGTCCGGTTCGTTTCCAGTAAATCGGGTTA
ACCCGAATTCACGGGTTGTTCAGGTTGTTGTTTTTTCGAGTATTTCGGGT
TTACCTTAAAAGTCGGGAAACCCAGGTTAGCGCGCGCCTGCGCACCGAGC
ACTAACCTGAAGAACTCGGGTTATTGGACGATTTTGAGTGGTCCTTCGCg
tccgcaaaaatatttttttcacgaTCGAGAATTTTGAGCgcgcttttttt
ctttctgcgAGAGAGTTCAAGATGGAAGGTCACGTCACTTCGTACTTCTC
ATTTACAATTCACTTTGACAACTGGATGAAGAAAATCGCCTTCAATTTTC
CAAAGATAATGACTATGACtggatgaagaaaaaaagGTTCAACCCCAACA
AGAGCTAAAATGCAcaaagaattcaaaattgaCAATTCACTCAGATTACA
CCGCAAGTCAAacatGGCTCTTCCAACCATAGTACCAACTGAATCAAAAT
TCGAAAGCTGATGAAAATTCTTCCCTATTTAACAAGTGAAGAAAGTCAAT
GGAGTTTCGTGACAGCGACAAATTCGGTTAACTCAACTCAAATTTGCGAT
GTTGTTTTCACATTTCTTTTGCAGTATGAATTTTCAGTCTCAAACACGTT
CCCCGTGTCTATATTAGATGGTGACAGCTTCTTGTATAATGTGTTCCAAA
CAGTTGTTATTCCTGGTTAGTCATGTCAAATGAGTGCAACTGTAATCTGC
TTTTGAACTGGAACCTCTTATACATATCAAAAATCGATTAAGGAACAATC
ATGTTAAAGTAATTCTTTTATTCTATGAAATGTGTTAAAGTAG Run BLAST on NCBI protein sequence of TCONS_00035972-protein >TCONS_00035972-protein ID=TCONS_00035972-protein|Name=TCONS_00035972-protein|organism=Clytia hemisphaerica|type=polypeptide|length=362bp
SRNSNGHQVEGSIGTSVLLKFESIKEIKQYIRSEYSNTNLFNIIYLKTDF
HNEKDIKSTILTKVSRRQLNASVKRYREKRKGTTKHEQEKKNKRQRRESN
KGSEKHENEKELKRMRRELCKGSEKHENEKERKRKDYKANKKLHGGKRVR
NFRQKKQEGPSYICVMCNRCMYKKSVFGFDEQKYSLINFEEIEHFNPVTS
FDGNFHVCTTCHRRLTKGEIPCQSVINKLQIFDLPDNLNDIRKLERILVA
QRILFSKVLIMRKGEFPKLQGAICNVPIETPGVCKVLPRGSDSSGVINVE
LKRKISYKNPFISQQVRRQKVFETLDFLVNNPGKSTRVQFRVYQVHPTSP
EIAIFESPVRFQ Run BLAST on NCBI transcript from alignment at sc0001396:13504..18705- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035972 ID=TCONS_00035972|Name=TCONS_00035972|organism=Clytia hemisphaerica|type=transcript|length=5202bp|location=Sequence derived from alignment at sc0001396:13504..18705- (Clytia hemisphaerica)
ATAGTAGAAACTCTAATGGTCATCAAGTTGAAGGGAGCATTGGAACTTCA
GTTCTTTTGAAGTTTGAAAGCATTAAAGAGATTAAACAATATATAAGGTC
AGAGTATAGTAATACCAATCTTTTTAACATAATTTATCTAAAAACTGATT
TTCACAATGAGAAAGATATAAAAAGTACAATTTTGACAAAAGTCTCACGC
AGACAATTAAATGCTTCTGTTAAAAGGTATCGGGAAAAAAGGAAAGGTAC
TACAAAGCATGAACAAGAAAAGAAAAACAAAAGACAACGTCGAGAATCGA
ATAAAGGGTCAGAAAAACATGAAAATGAAAAAGAATTAAAGCGCATGCGA
AGAGAATTGTGTAAAGGGTCAGAAAAACATGAAAATGAAAAAGAAAGAAA
GCGTAAAGATTACAAAGCTAACAAGAAACTTCATGGAGGAAAAAGGGTTA
GGAACTTCAGACAGAAAAAACAAGAGGGCCCTTCCTACATCTGTGTAATG
TGTAACCGCTGTATGTACAAAAAATCTGTATTTGGTTTTGATGAACAAAA
GTACTCATTGATCAACTTTGAAGAAATAGAACATTTTAATCCTGTAACCT
CGTTCGATGGTAATTTCCACGTATGCACAACCTGTCATAGAAGATTAACG
AAGGGAGAAATCCCATGTCAGTCTGTTATTAACAAGCTTCAAATTTTTGA
TCTCCCAGATAATCTAAATGATATACGAAAACTGGAAAGAATTTTAGTGG
CTCAAAGAATTTTATTTTCTAAAGTTTTGATAATGCGTAAAGGAGAATTC
CCTAAATTGCAAGGTGCAATATGCAATGTTCCCATTGAAACACCAGGTGT
ATGCAAAGTACTTCCTAGAGGAAGTGATAGTAGTGGGGTAATAAATGTTG
AATTAAAAAGAAAGATATCCTACAAAAACCCTTTTATTTCACAGCAAGTA
AGACGACAAAAAGTTTTTGAAACTTTGGACTTTTTAGTGAATAACCCTGG
TAAATCAACTCGGGTTCAATTTCGGGTGTATCAGGTTCACCCGACCTCAC
CTGAAATTGCTATTTTTGAAAGTCCGGTTCGTTTCCAGTAAATCGGGTTA
ACCCGAATTCACGGGTTGTTCAGGTTGTTGTTTTTTCGAGTATTTCGGGT
TTACCTTAAAAGTCGGGAAACCCAGGTTAGCGCGCGCCTGCGCACCGAGC
ACTAACCTGAAGAACTCGGGTTATTGGACGATTTTGAGTGGTCCTTCGCG
TCCGCAAAAATATTTTTTTCACGATCGAGAATTTTGAGCGCGCTTTTTTT
CTTTCTGCGAGAGAGTTCAAGATGGAAGGTCACGTCACTTCGTACTTCTC
ATTTACAATTCACTTTGACAACTGGATGAAGAAAATCGCCTTCAATTTTC
CAAAGATAATGACTATGACTGGATGAAGAAAAAAAGGTATGCTTTTATCA
TTCTTTATTTTCTTAATAAATTTGACAGGGCAGGGGAAGTTGGTTTGATT
AATGGTTCTTCTGATCAATCTCTTTTCTCAGCCTCAGAGTGTTCTNTTGA
CAGGGCAGGGGAAGTTGGTTTGATTCATGGTTCTTCTGATCAATCTCTTT
TCTCAGCCTCAGAGTGTTCTTTGAACTTAAGTGCCAAAAATATATCTCAG
TTATATTATTTATCTTTGCAAGTAAGTCTATAAAGTAATCCCAACAAATT
GTTTCCTGGAAACTTTTAACCTTTATTAGAGCTAGAATCTGAGAGTTTTT
GTTTGGGGTGTATCTCACTAGAGTACGACACCTTCTACTTCAACAACCAG
TTAGTCACACTAGGAAATCTAGCTTTCAGAAAAAACAACATCAGTCATCT
ACAGGATACATTTCAACAACAAGGATGAGAGTTGCCTGAATCAAGTTCGC
AAGACAATATTAATTAAAACTTGAAAGTTTGAAACAAAATAAAACGTGCA
GCAGCCAAATATCAACCAACCAAATTTTGTCATTCAATTCCCGAGACAGC
GCTTCGATTTTTAAGGCCTTGTTTATACGCTAAAGTAAAAATAATTCCGA
ACATGTAAATGGGTCATTGTTTGAGGTANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGTTTTTGA
AAATGTTAATTTCATTAAAAAGCGCCGGGTTATTTTTTCATGAATCTCTT
TAGAAGTTTTGCGGTGCATTTTTTTGCTCGAGAGTCAAGTAAACGATATA
GCGCTTTCGCAGCATTAATCTTTGATATGCATTTTGGCGGGACGCTAGTG
TGACTAACTGACAACAACAGTCGGAATCCAGCGTGGAAGTTTGTCTACTA
TGACTGCTTTTTTGTCCGAACACAGTTGCATGATTTGTCATATTTTGTCT
GAAGGCCAACCAAAATGGTGCATCTCAGAAATCAACAATTCTTCAATGAG
GAGTCCCTTCGAATTTTTTTTTACAATCACCTAAACTTTTACCAATTGGT
TTACCAATTTTACCAACCGGCAACAAATAATATTCTCAACTTCAGTTGAG
CTAGAATCTGAGAATGTCTGTCAGTATGTCCGTGCAGTCTGTCACGGCTA
AACTTTGTTTGGGGCAGCGGTCAGGCTGGAGTCTTCAAAAATGGTCGGAT
TCGGCTGAAATTTTGCACACTTGTTCCTTGGGTGAATATTTGGGAGCACT
TTTTTCATTTTTTCAAAATATTGAGTCTTAGGGGTGTGGCCACGTGTTTT
AGTCTCAAAACAAGGCTAAAAACTTTGGGACAGGCTTGAGACTTCAAAAA
TATTCCGATTCAGCTGAAATTTTGCACACTTGTTCCTTGGGTGATTATCT
GGGGGAATTTTTTTGCTTTTTTTCGAAATGTTGACTCTTGGGGGTGTGGT
AATGAGTTTTAGCCTCAAAACGAGGCTTAAACTTTGGGGCAGGCTTGAGA
CTTCAAAAATATTCCGATTCAGATGAAATTTTGCACACTTGTTCCTTGGG
TGAATATCTGGGAATGTTTTTTTCATTTTTTCAAAATTTTGATTCTTAGG
GGTGTGGTCATGAATTTTGGCCTCAAAACGAGGCTAAAAACTCTGGGACA
GCTTGGAGACTTCAAAAATATTCTGATTCAGCTGAAATTTTGCACACTTG
TTCCTTGGGTGAATATCTAGGGTATTTTTCATTTTTTAAAATTTTGATTC
AATAGGGGCGTGGTCATGAATTTTACCCTCAAAACAAGGCTGAAAACTTT
AAGGCAAGCTCGAGACTTCAAAAATGGTTAGATTTTAGCTGAGTAACAGC
AAAATTCTTTGAAACTTCTCCGTTTCCATTTTTTTACTTTGGCACAATAA
AAAAATCTTTCGTGAGATTCGTAAAGTGCACTATGCAATGCTTCAATTGC
AATTATACCAATTTTGTCTTTCAAATAACTTTTTTTATTGCACTCATTAG
ACAGGTAACATTTTTTTTGGGCCGGCCTAATAACTAGATAATTTCCTTAC
TTACTATGCTTTAGAAACGTCTGAAATTAGGTTGTGGTGTGTCATTCAGG
TTAGATAATTTTTTTTACTTATAAATGTTCATAAGGGAATAACTGATAGT
TTTTGGATGGGTGTAGCTCAAGAAAGAGAATCCAATAAAACATGCATACC
CTGCTTCCCTCACTCAGGAAAGAACAATATAAAATGAAAAATATTTTTTT
ATATTCATTCTTTTTTGACAGGTTCAACCCCAACAAGAGCTAAAATGCAC
AAAGAATTCAAAATTGACAATTCACTCAGATTACACCGCAAGTCAAGTAA
GTACCGAATGTCTGTTTTACTATTCAGATGTTGAAAGATGCCTGTTAAAC
AGATGGCTGAACTGTGAAAATCACAAATAGGTTTTTAGTCATTCTGAGCC
TCATGTTTCTTAAAAGTGTGTTTCTTAAAAAAAAAACTTGTAGCTCAGTA
CATTGAAGACTGTGAACAAGAATTTTTAGCCTTCCGTAAATTCTTAAAAA
AGTCATTGCTTGAGATTTAAATGGAGTTTGTGGTAACAATTCAGTAATGA
GAAATTCTAATATTTTTTTAGACATGGCTCTTCCAACCATAGTACCAACT
GAATCAAAATTCGAAAGCTGATGAAAATTCTTCCCTATTTAACAAGTAAG
TGTTATTTTTCAATGCGAAGATATTTGGGCGGATGAACAGGTCAACTATA
TCATGATATATTCCAGTATACTATTTTTTAGGGAAGCCATTTCAAGTTCT
GAGGGTTTGAAATTTTTGTTGAAGGACTCCCTAGGGCACTCAGGCAAACA
AGGCTCGAAATAACAATTTCAAGTAGGTCGGACAAAATGTCCGATCAGGG
TTGCTTTAGCTTGAAAATTATGATTTTCGGGTCAGACATGTAGCTATTTG
GGTCGGACAATGTCCGATGTCCGACCGTTATTTCGAGCCCTGGCAAGATG
GGGATGTGTCGCTGACCAGAGTCGCTTTTATAAGTAAGGAAATACTTGGG
ATATTTTAAAATTCACTAAATTGACACGCCAGTGACAGTACCCCTCCCCT
GGGAAATTCAGACATTAAATGTATACAATAATCGACAACGCTTCAAAACC
TTACTGAATTTCTATGACATGATTATTTATCATTAATTTTTAAGGTGAAG
AAAGTCAATGGAGTTTCGTGACAGCGACAAATTCGGTTAACTCAACTCAA
ATTTGCGATGTTGTTTTCACATTTCTTTTGCAGTATGAATTTTCAGTCTC
AAACACGTTCCCCGTGTCTATATTAGATGGTGACAGCTTCTTGTATAATG
TGTTCCAAACAGTTGTTATTCCTGGTTAGTCATGTCAAATGAGTGCAACT
GTAATCTGCTTTTGAACTGGAACCTCTTATACATATCAAAAATCGATTAA
GGAACAATCATGTTAAAGTAATTCTTTTATTCTATGAAATGTGTTAAAGT
AG Coding sequence (CDS) from alignment at sc0001396:13504..18705- >TCONS_00035972 ID=TCONS_00035972|Name=TCONS_00035972|organism=Clytia hemisphaerica|type=CDS|length=1089bp|location=Sequence derived from alignment at sc0001396:13504..18705- (Clytia hemisphaerica)
AGTAGAAACTCTAATGGTCATCAAGTTGAAGGGAGCATTGGAACTTCAGT
TCTTTTGAAGTTTGAAAGCATTAAAGAGATTAAACAATATATAAGGTCAG
AGTATAGTAATACCAATCTTTTTAACATAATTTATCTAAAAACTGATTTT
CACAATGAGAAAGATATAAAAAGTACAATTTTGACAAAAGTCTCACGCAG
ACAATTAAATGCTTCTGTTAAAAGGTATCGGGAAAAAAGGAAAGGTACTA
CAAAGCATGAACAAGAAAAGAAAAACAAAAGACAACGTCGAGAATCGAAT
AAAGGGTCAGAAAAACATGAAAATGAAAAAGAATTAAAGCGCATGCGAAG
AGAATTGTGTAAAGGGTCAGAAAAACATGAAAATGAAAAAGAAAGAAAGC
GTAAAGATTACAAAGCTAACAAGAAACTTCATGGAGGAAAAAGGGTTAGG
AACTTCAGACAGAAAAAACAAGAGGGCCCTTCCTACATCTGTGTAATGTG
TAACCGCTGTATGTACAAAAAATCTGTATTTGGTTTTGATGAACAAAAGT
ACTCATTGATCAACTTTGAAGAAATAGAACATTTTAATCCTGTAACCTCG
TTCGATGGTAATTTCCACGTATGCACAACCTGTCATAGAAGATTAACGAA
GGGAGAAATCCCATGTCAGTCTGTTATTAACAAGCTTCAAATTTTTGATC
TCCCAGATAATCTAAATGATATACGAAAACTGGAAAGAATTTTAGTGGCT
CAAAGAATTTTATTTTCTAAAGTTTTGATAATGCGTAAAGGAGAATTCCC
TAAATTGCAAGGTGCAATATGCAATGTTCCCATTGAAACACCAGGTGTAT
GCAAAGTACTTCCTAGAGGAAGTGATAGTAGTGGGGTAATAAATGTTGAA
TTAAAAAGAAAGATATCCTACAAAAACCCTTTTATTTCACAGCAAGTAAG
ACGACAAAAAGTTTTTGAAACTTTGGACTTTTTAGTGAATAACCCTGGTA
AATCAACTCGGGTTCAATTTCGGGTGTATCAGGTTCACCCGACCTCACCT
GAAATTGCTATTTTTGAAAGTCCGGTTCGTTTCCAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035972-exon-sc0001396-1575043694:17270..18705 | TCONS_00035972-exon-sc0001396-1575043694:17270..18705 | Clytia hemisphaerica | exon |
| TCONS_00035972-exon-sc0001396-1575043694:14660..14734 | TCONS_00035972-exon-sc0001396-1575043694:14660..14734 | Clytia hemisphaerica | exon |
| TCONS_00035972-exon-sc0001396-1575043694:14311..14384 | TCONS_00035972-exon-sc0001396-1575043694:14311..14384 | Clytia hemisphaerica | exon |
| TCONS_00035972-exon-sc0001396-1575043694:13504..13811 | TCONS_00035972-exon-sc0001396-1575043694:13504..13811 | Clytia hemisphaerica | exon |
| TCONS_00035972-exon-sc0001396-1510915933:17270..18705 | TCONS_00035972-exon-sc0001396-1510915933:17270..18705 | Clytia hemisphaerica | exon |
| TCONS_00035972-exon-sc0001396-1510915933:14660..14734 | TCONS_00035972-exon-sc0001396-1510915933:14660..14734 | Clytia hemisphaerica | exon |
| TCONS_00035972-exon-sc0001396-1510915933:14311..14384 | TCONS_00035972-exon-sc0001396-1510915933:14311..14384 | Clytia hemisphaerica | exon |
| TCONS_00035972-exon-sc0001396-1510915933:13504..13811 | TCONS_00035972-exon-sc0001396-1510915933:13504..13811 | Clytia hemisphaerica | exon |
| TCONS_00035972-exon-sc0001396-1491911889:17270..18705 | TCONS_00035972-exon-sc0001396-1491911889:17270..18705 | Clytia hemisphaerica | exon |
| TCONS_00035972-exon-sc0001396-1491911889:14660..14734 | TCONS_00035972-exon-sc0001396-1491911889:14660..14734 | Clytia hemisphaerica | exon |
| TCONS_00035972-exon-sc0001396-1491911889:14311..14384 | TCONS_00035972-exon-sc0001396-1491911889:14311..14384 | Clytia hemisphaerica | exon |
| TCONS_00035972-exon-sc0001396-1491911889:13504..13811 | TCONS_00035972-exon-sc0001396-1491911889:13504..13811 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001396 | supercontig | sc0001396:13504..18705 - |
Blast
The following BLAST results are available for this feature:
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