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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035946 ID=TCONS_00035946|Name=TCONS_00035946|organism=Clytia hemisphaerica|type=transcript|length=1962bp
NCATTGGTGCCTGCAAAGATACATTTGGGAAGAGAATTTGGACAGAACAA
GAATCCCAAAGGAAAAGATCATCAAAACTCTAATTTATGGAGTCAAATCC
TCTGGTAACCAATCAGAACGTGCCCTCAGGGGGACAGCACGTTTATCAAA
AGACGAGTATCCTGATGCTTACGAAGTCATTACCAAAGATGTGTATGTTG
ACGATTGTTTATCAGGTGCTGAATCAATGTCAGCAGCAATCAAATTGGCA
GATGGCCTGGAAGTTGTAGTCAATAGAGGTGGTTTTGCATTGATGGAAGT
CACTTTTTCCAAACAAACACCTGACAAGGACTCTCTGCCGATGGTGAAAG
CATCAGTGTGGCTGGTATGAAATGGTTCTCACTACAAGATGAATTATCCT
TGGATGTCAGTGAACTTAACTTTGCAACAAAAGTTAGGGGGAAGAAACCA
ATGTCAATCAAGGATATCCCAAAGAACCTAACTAGAAGACAATGTGTATC
AAAGGTGGCAGAATTGTATGACATCACAGGAAAGATAACACCCATCACAG
CAGGTATGAAACTGGANAGAGCAAATTATATCAACAATCAGTCCACAGAG
CATGTTGTCAATGTCATACTTGTCAGAAGCTCAAACTTGCCATTTGTCAT
CATCAGCACAATCAATATCTGATCGATACAGTTTTTCAAAGTACATCATT
GATCCTAACAAATATGGTTGGAAGAAAGCCACTTCAACTCTTGCTCTTGT
GATCAAATTCCTGAAACTCAAGTCGTGTCTACCAAAACCATCTTCAAAGG
ATAACAACGCGTTGGCACAGGAATATTTCTTTATGAAATCAACCCAAGAA
GTGAAGAAATTTACACCATCAAAGAGATTGGCAAACATTTTATCTGAGAA
AAATGGAATTCTTTACTACAACGAACGTATCCTTCCAATCGAAAAAATCA
CATCAACTGGAAAGCTCACCAATACAATGTTTGACTTGTCCTCGTCAACC
TTCATTGTCCCAGTTTTCGACAGATATTCGCCAATCGCTTACAGTATTGT
TAACTTCATTCACTGGTACCACCCGGTGGCTAAACACAAAGGAGTGGAAA
CAGTGTATCGCTACGTTCTACAGATCGCATATATCATCGATGGACGAGAT
CTAATTCGTACTATCAAAAGGAATTGTCAAAGATGCCGCTACCTGGCCAA
GAAAGCAATTAACGTTGAAATGGGTCCAGTATCCCAGCACAGTCTCAATA
TTGCACCACCATTTTATTCAACTCAAGTGGATCTATGTGGTCCATTCAGT
GCATATTCAAGTTTCAATAAGCGAAAGAGTATAAAGATTTGGTTGGTGGT
TTTTTGTTGCACAACAACATCAGCAACAAAAATACATGTTATGGATGACT
GCAGTACACCATCATTCATCCTATCGGTTATCAGATTTTCAACGTTGGCT
ATCCCAAGTATTTGTTGCCAGATGAAGGCAGTCAATTAGTCAAAGGATGT
GATTCTCTCCGACTCAACTTTAAGGATCTTCAAAACCAACTTCATCGCGA
CACAATGATCGAATTTGAAGTATGTCCAGTTTCAGGTCATTTCATGCACG
GAAAGGTAGAAAGGAAGattcaagaaataaagaaatcaaTCGAGATGAAT
TTCCACAACCATAAGCTTTCCTTAATGCAATGGGAAACTGTTGCAGCACA
AGTTGGAAATACAATCAATGACATGCCACTTGCTCTTGCTGGACAGACTG
ATTACGAGATATCTGATGTCTTAACACCAAATCGTCTGCTACTGGGCAGA
AATAACGAGAGAAGTCCAACCTTTCCTGTTGATGTTAGCACAAAACCTGA
TAAATTCATCAGGTTGAATCAAGAGATATTTCAAGCGTGGTTCGAAACAT
GGCTCGTTGTCCATGTGCCACGGCTAATGCATCGACCAAAATGGTTCAAG
AACGAATACGAC Run BLAST on NCBI protein sequence of TCONS_00035946-protein >TCONS_00035946-protein ID=TCONS_00035946-protein|Name=TCONS_00035946-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
MLSMSYLSEAQTCHLSSSAQSISDRYSFSKYIIDPNKYGWKKATSTLALV
IKFLKLKSCLPKPSSKDNNALAQEYFFMKSTQEVKKFTPSKRLANILSEK
NGILYYNERILPIEKITSTGKLTNTMFDLSSSTFIVPVFDRYSPIAYSIV
NFIHWYHPVAKHKGVETVYRYVLQIAYIIDGRDLIRTIKRNCQRCRYLAK
KAINVEMGPVSQHSLNIAPPFYSTQVDLCGPFSAYSSFNKRKSIKIWLVV
FCCTTTSATKIHVMDDCSTPSFILSVIRFSTLAIPSICCQMKAVN Run BLAST on NCBI transcript from alignment at sc0001391:73473..75434 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035946 ID=TCONS_00035946|Name=TCONS_00035946|organism=Clytia hemisphaerica|type=transcript|length=1962bp|location=Sequence derived from alignment at sc0001391:73473..75434 (Clytia hemisphaerica)
GTCGTATTCGTTCTTGAACCATTTTGGTCGATGCATTAGCCGTGGCACAT
GGACAACGAGCCATGTTTCGAACCACGCTTGAAATATCTCTTGATTCAAC
CTGATGAATTTATCAGGTTTTGTGCTAACATCAACAGGAAAGGTTGGACT
TCTCTCGTTATTTCTGCCCAGTAGCAGACGATTTGGTGTTAAGACATCAG
ATATCTCGTAATCAGTCTGTCCAGCAAGAGCAAGTGGCATGTCATTGATT
GTATTTCCAACTTGTGCTGCAACAGTTTCCCATTGCATTAAGGAAAGCTT
ATGGTTGTGGAAATTCATCTCGAttgatttctttatttcttgaatCTTCC
TTTCTACCTTTCCGTGCATGAAATGACCTGAAACTGGACATACTTCAAAT
TCGATCATTGTGTCGCGATGAAGTTGGTTTTGAAGATCCTTAAAGTTGAG
TCGGAGAGAATCACATCCTTTGACTAATTGACTGCCTTCATCTGGCAACA
AATACTTGGGATAGCCAACGTTGAAAATCTGATAACCGATAGGATGAATG
ATGGTGTACTGCAGTCATCCATAACATGTATTTTTGTTGCTGATGTTGTT
GTGCAACAAAAAACCACCAACCAAATCTTTATACTCTTTCGCTTATTGAA
ACTTGAATATGCACTGAATGGACCACATAGATCCACTTGAGTTGAATAAA
ATGGTGGTGCAATATTGAGACTGTGCTGGGATACTGGACCCATTTCAACG
TTAATTGCTTTCTTGGCCAGGTAGCGGCATCTTTGACAATTCCTTTTGAT
AGTACGAATTAGATCTCGTCCATCGATGATATATGCGATCTGTAGAACGT
AGCGATACACTGTTTCCACTCCTTTGTGTTTAGCCACCGGGTGGTACCAG
TGAATGAAGTTAACAATACTGTAAGCGATTGGCGAATATCTGTCGAAAAC
TGGGACAATGAAGGTTGACGAGGACAAGTCAAACATTGTATTGGTGAGCT
TTCCAGTTGATGTGATTTTTTCGATTGGAAGGATACGTTCGTTGTAGTAA
AGAATTCCATTTTTCTCAGATAAAATGTTTGCCAATCTCTTTGATGGTGT
AAATTTCTTCACTTCTTGGGTTGATTTCATAAAGAAATATTCCTGTGCCA
ACGCGTTGTTATCCTTTGAAGATGGTTTTGGTAGACACGACTTGAGTTTC
AGGAATTTGATCACAAGAGCAAGAGTTGAAGTGGCTTTCTTCCAACCATA
TTTGTTAGGATCAATGATGTACTTTGAAAAACTGTATCGATCAGATATTG
ATTGTGCTGATGATGACAAATGGCAAGTTTGAGCTTCTGACAAGTATGAC
ATTGACAACATGCTCTGTGGACTGATTGTTGATATAATTTGCTCTNTCCA
GTTTCATACCTGCTGTGATGGGTGTTATCTTTCCTGTGATGTCATACAAT
TCTGCCACCTTTGATACACATTGTCTTCTAGTTAGGTTCTTTGGGATATC
CTTGATTGACATTGGTTTCTTCCCCCTAACTTTTGTTGCAAAGTTAAGTT
CACTGACATCCAAGGATAATTCATCTTGTAGTGAGAACCATTTCATACCA
GCCACACTGATGCTTTCACCATCGGCAGAGAGTCCTTGTCAGGTGTTTGT
TTGGAAAAAGTGACTTCCATCAATGCAAAACCACCTCTATTGACTACAAC
TTCCAGGCCATCTGCCAATTTGATTGCTGCTGACATTGATTCAGCACCTG
ATAAACAATCGTCAACATACACATCTTTGGTAATGACTTCGTAAGCATCA
GGATACTCGTCTTTTGATAAACGTGCTGTCCCCCTGAGGGCACGTTCTGA
TTGGTTACCAGAGGATTTGACTCCATAAATTAGAGTTTTGATGATCTTTT
CCTTTGGGATTCTTGTTCTGTCCAAATTCTCTTCCCAAATGTATCTTTGC
AGGCACCAATGN Coding sequence (CDS) from alignment at sc0001391:73473..75434 >TCONS_00035946 ID=TCONS_00035946|Name=TCONS_00035946|organism=Clytia hemisphaerica|type=CDS|length=888bp|location=Sequence derived from alignment at sc0001391:73473..75434 (Clytia hemisphaerica)
CTAATTGACTGCCTTCATCTGGCAACAAATACTTGGGATAGCCAACGTTG
AAAATCTGATAACCGATAGGATGAATGATGGTGTACTGCAGTCATCCATA
ACATGTATTTTTGTTGCTGATGTTGTTGTGCAACAAAAAACCACCAACCA
AATCTTTATACTCTTTCGCTTATTGAAACTTGAATATGCACTGAATGGAC
CACATAGATCCACTTGAGTTGAATAAAATGGTGGTGCAATATTGAGACTG
TGCTGGGATACTGGACCCATTTCAACGTTAATTGCTTTCTTGGCCAGGTA
GCGGCATCTTTGACAATTCCTTTTGATAGTACGAATTAGATCTCGTCCAT
CGATGATATATGCGATCTGTAGAACGTAGCGATACACTGTTTCCACTCCT
TTGTGTTTAGCCACCGGGTGGTACCAGTGAATGAAGTTAACAATACTGTA
AGCGATTGGCGAATATCTGTCGAAAACTGGGACAATGAAGGTTGACGAGG
ACAAGTCAAACATTGTATTGGTGAGCTTTCCAGTTGATGTGATTTTTTCG
ATTGGAAGGATACGTTCGTTGTAGTAAAGAATTCCATTTTTCTCAGATAA
AATGTTTGCCAATCTCTTTGATGGTGTAAATTTCTTCACTTCTTGGGTTG
ATTTCATAAAGAAATATTCCTGTGCCAACGCGTTGTTATCCTTTGAAGAT
GGTTTTGGTAGACACGACTTGAGTTTCAGGAATTTGATCACAAGAGCAAG
AGTTGAAGTGGCTTTCTTCCAACCATATTTGTTAGGATCAATGATGTACT
TTGAAAAACTGTATCGATCAGATATTGATTGTGCTGATGATGACAAATGG
CAAGTTTGAGCTTCTGACAAGTATGACATTGACAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035946-exon-sc0001391-1491911889:73473..75434 | TCONS_00035946-exon-sc0001391-1491911889:73473..75434 | Clytia hemisphaerica | exon |
| TCONS_00035946-exon-sc0001391-1510915933:73473..75434 | TCONS_00035946-exon-sc0001391-1510915933:73473..75434 | Clytia hemisphaerica | exon |
| TCONS_00035946-exon-sc0001391-1575043694:73473..75434 | TCONS_00035946-exon-sc0001391-1575043694:73473..75434 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001391 | supercontig | sc0001391:73473..75434 . |
Blast
The following BLAST results are available for this feature:
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