TCONS_00035945 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035945
Unique NameTCONS_00035945
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length144

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035945 ID=TCONS_00035945|Name=TCONS_00035945|organism=Clytia hemisphaerica|type=transcript|length=144bp
ATCACACTGAATAGACTTTGTTTGTAAttcatgttttaattttttacgtA
AAGTTTCAATTTCGATTTTCAATTCTGTGTTTTCAATACGATATCCTTGC
ATAGTCAGCTTTAGACGTGCTGAAGAGGTTGAACTTATTGGGGC
Run BLAST on NCBI

transcript from alignment at sc0001391:60190..60333

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035945 ID=TCONS_00035945|Name=TCONS_00035945|organism=Clytia hemisphaerica|type=transcript|length=144bp|location=Sequence derived from alignment at sc0001391:60190..60333 (Clytia hemisphaerica)
GCCCCAATAAGTTCAACCTCTTCAGCACGTCTAAAGCTGACTATGCAAGG
ATATCGTATTGAAAACACAGAATTGAAAATCGAAATTGAAACTTTacgta
aaaaattaaaacatgaaTTACAAACAAAGTCTATTCAGTGTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021110XLOC_021110Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035945-exon-sc0001391-1491911889:60190..60333TCONS_00035945-exon-sc0001391-1491911889:60190..60333Clytia hemisphaericaexon
TCONS_00035945-exon-sc0001391-1510915933:60190..60333TCONS_00035945-exon-sc0001391-1510915933:60190..60333Clytia hemisphaericaexon
TCONS_00035945-exon-sc0001391-1575043694:60190..60333TCONS_00035945-exon-sc0001391-1575043694:60190..60333Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001391supercontigsc0001391:60190..60333 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035945 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top