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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035926 ID=TCONS_00035926|Name=TCONS_00035926|organism=Clytia hemisphaerica|type=transcript|length=2410bp
NTTTCTCATTTTAACGAAAAATATCTCCGTCAACAAGCCTTATACATCAC
ACAAAGAGGTTATATTCGTGAAACTCAAACCGTTGCTAATAACAACGGAA
ATATTGCGAACGAAATTAACAATGAAGAGATAATTGCAGAAAATGACTTT
AATGTTGATCCTCACCTCGCTGTTAACGACGTGCCTCAAGAAGTTGATGA
CCAAATTAATAATTCAATTCATCAAGCTGACGAGCAACACGTTATCAATA
TCAATAACAACGAAGTTTACCAAAAGTTAAGAGAGAGTTTCACTGCCAAT
TACCAGTTGTTCAACTCTATCGAAAATGAACGTATAATACCAACCTTTAT
ACGACGAAAACCAGCGAAAGAAAGGATAAACATTGTCAATGACATAGCTA
ATGAGTTTCTTACGAACATTAAAGAAAACAGAGGGGCTACATTCGAAGAT
ATTAACTGTCTCATATATACCTCTGCTATTACCTTGAAAGGAGATACAAA
CAACCAAACCAAGGCACATACCGAACCTAAATGGCTGACATCACtccaaa
acaaaattgataGTATTCGTCGAAACATTGCCCACATTGAGCTTATTCTA
AAATGCAAGGAAACCAATACTTTTAcgaaaaaacaacagaaaatttCCAA
CCGCCTTcgaaagaaatatggaaatatcaaaaaAGGAAATCTCGTTTACC
GCCAAAAATCACTCAAAAACGAATTAAAGGCAATCTCAACAAAACTCAAA
TATCAACGTAAGGTATCTGAACGTAAACGaattaacaaacttttttcgcA
TAATCCAAAATCTGTCTACCGTTCATTCAAGGAGAGTGCCAGTGACGTAA
AAGATCCACCTACCAAAACCGAAATTGAAAACTTCTGGAAAGGTATTTGG
GAGACGGAGGGAAACTTTAATTCAGATGCTGAATGGCTCCATACCCTTGA
GAACGAATATTGTACTGATATCCAGAATAATACGAACTGTGATATCACCC
GTGAAACAATGAGAAAATCCATCTCGAAACTCCAAGACAGCAAATCTCCA
GGAAATGATCTTATTATCGGTTATTGGTATAAACATCTAACATTTTTCGA
TAATGAACTCTCACAATTGTTTAATAATGCGTTAAATGGCAACATCCAAG
TCCCTGATTGGATGACAAAAGCAAAAACCACACTCTTGTCGAAAAACAAG
GAGACCAAACAGCCCAAAAACTACCGCCCTATCGCACTACAAAACATAAT
GCTAAAACTCTACACATCGTGTATCAATCAATTTGTTCAACACCATTGCG
AATCGAACAACATTGTTACAACTGAACAAGCTGGAGGAAAAAAGGACGTT
TGGGGTTGCTTAGAGCAACTCTTGATCAACAAAACCGTAATGAATGAAAC
TAAGCACTATCGGAGATCGCTTGTTACCATGTGGCTAGATTACCAGAAGG
CATTTGATAGCGTACCACACCAATGGCTCATCAAAGCACTCCAACTTGCG
AAAGTTCCCCCAGTTATCATCTCCGCACTCGAGCACCTTATCACGAAATG
GTCAACAAACGTTCATCTTCGAACTACCGAGACGACGATAGTATCTGACG
AAATTAAATATAACAGAGGAATATTCCAAGGAGACAGTTTATCAGTCATC
CTATTCATCTTATGTCTCAACCCGTTAtcatttcttttaaacaaactCGT
GGGCTATAAGATGGGACCCAATGGTAATCGAACTCAGAATATCACAAACC
TATTTTTCGTTGACGATCTTAAACTATTCGCTACCAACCTGACTCAGATG
AAAACCTTGCTGGACATTGTCACGGAGTTTTCGAATGACATTGACATGAA
ATTCGGCTTAACAAAGTGCGCATATCTTCGAATCGAAAAAGGTAAAATCG
CAACATCAAAAGAACCAATCGTAATGAACAATATCTCGATCGACCCAGTG
AAGGAAGGAGATTCGTACAAGTATCTCGGCCAAGACGAAAATCTTGGATA
CGTCGGTCCAATCAACAAAGAAAGAGTCGTAAAGGAATACCTAAAACGAG
TCAGAAAAGTCTGGGAGAGTGAACTCTCAGGCTACCATAAACACATCGCT
CATAATGCTTAAGCTGTTCCAGTTATCGTACCTACATTCGGTTTGCTTGA
TTGGACCAAAGCAGAGATCGAAAAAATCGACATAAAAACTCGAAAAACAC
TTTGTATGATCGGCAGTTTCCACAGAAACTCTGATGTGGACCGTCTCTAC
GTCCAGAGAAAGAAAGGAGGTCGTGGACTTAAGTCAATTCAAATCGCCTA
TGAATAGGGTGTAAACTGGaaccatgaaaaaatattttttttggattttc
aaaattgtcacaattttttatcaaaatttatcatattttaagactttttg
cgcaattttt Run BLAST on NCBI protein sequence of TCONS_00035926-protein >TCONS_00035926-protein ID=TCONS_00035926-protein|Name=TCONS_00035926-protein|organism=Clytia hemisphaerica|type=polypeptide|length=703bp
XSHFNEKYLRQQALYITQRGYIRETQTVANNNGNIANEINNEEIIAENDF
NVDPHLAVNDVPQEVDDQINNSIHQADEQHVININNNEVYQKLRESFTAN
YQLFNSIENERIIPTFIRRKPAKERINIVNDIANEFLTNIKENRGATFED
INCLIYTSAITLKGDTNNQTKAHTEPKWLTSLQNKIDSIRRNIAHIELIL
KCKETNTFTKKQQKISNRLRKKYGNIKKGNLVYRQKSLKNELKAISTKLK
YQRKVSERKRINKLFSHNPKSVYRSFKESASDVKDPPTKTEIENFWKGIW
ETEGNFNSDAEWLHTLENEYCTDIQNNTNCDITRETMRKSISKLQDSKSP
GNDLIIGYWYKHLTFFDNELSQLFNNALNGNIQVPDWMTKAKTTLLSKNK
ETKQPKNYRPIALQNIMLKLYTSCINQFVQHHCESNNIVTTEQAGGKKDV
WGCLEQLLINKTVMNETKHYRRSLVTMWLDYQKAFDSVPHQWLIKALQLA
KVPPVIISALEHLITKWSTNVHLRTTETTIVSDEIKYNRGIFQGDSLSVI
LFILCLNPLSFLLNKLVGYKMGPNGNRTQNITNLFFVDDLKLFATNLTQM
KTLLDIVTEFSNDIDMKFGLTKCAYLRIEKGKIATSKEPIVMNNISIDPV
KEGDSYKYLGQDENLGYVGPINKERVVKEYLKRVRKVWESELSGYHKHIA
HNA Run BLAST on NCBI transcript from alignment at sc0001388:12861..15270 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035926 ID=TCONS_00035926|Name=TCONS_00035926|organism=Clytia hemisphaerica|type=transcript|length=2410bp|location=Sequence derived from alignment at sc0001388:12861..15270 (Clytia hemisphaerica)
aaaaattgcgcaaaaagtcttaaaatatgataaattttgataaaaaattg
tgacaattttgaaaatccaaaaaaaatattttttcatggttCCAGTTTAC
ACCCTATTCATAGGCGATTTGAATTGACTTAAGTCCACGACCTCCTTTCT
TTCTCTGGACGTAGAGACGGTCCACATCAGAGTTTCTGTGGAAACTGCCG
ATCATACAAAGTGTTTTTCGAGTTTTTATGTCGATTTTTTCGATCTCTGC
TTTGGTCCAATCAAGCAAACCGAATGTAGGTACGATAACTGGAACAGCTT
AAGCATTATGAGCGATGTGTTTATGGTAGCCTGAGAGTTCACTCTCCCAG
ACTTTTCTGACTCGTTTTAGGTATTCCTTTACGACTCTTTCTTTGTTGAT
TGGACCGACGTATCCAAGATTTTCGTCTTGGCCGAGATACTTGTACGAAT
CTCCTTCCTTCACTGGGTCGATCGAGATATTGTTCATTACGATTGGTTCT
TTTGATGTTGCGATTTTACCTTTTTCGATTCGAAGATATGCGCACTTTGT
TAAGCCGAATTTCATGTCAATGTCATTCGAAAACTCCGTGACAATGTCCA
GCAAGGTTTTCATCTGAGTCAGGTTGGTAGCGAATAGTTTAAGATCGTCA
ACGAAAAATAGGTTTGTGATATTCTGAGTTCGATTACCATTGGGTCCCAT
CTTATAGCCCACGagtttgtttaaaagaaatgaTAACGGGTTGAGACATA
AGATGAATAGGATGACTGATAAACTGTCTCCTTGGAATATTCCTCTGTTA
TATTTAATTTCGTCAGATACTATCGTCGTCTCGGTAGTTCGAAGATGAAC
GTTTGTTGACCATTTCGTGATAAGGTGCTCGAGTGCGGAGATGATAACTG
GGGGAACTTTCGCAAGTTGGAGTGCTTTGATGAGCCATTGGTGTGGTACG
CTATCAAATGCCTTCTGGTAATCTAGCCACATGGTAACAAGCGATCTCCG
ATAGTGCTTAGTTTCATTCATTACGGTTTTGTTGATCAAGAGTTGCTCTA
AGCAACCCCAAACGTCCTTTTTTCCTCCAGCTTGTTCAGTTGTAACAATG
TTGTTCGATTCGCAATGGTGTTGAACAAATTGATTGATACACGATGTGTA
GAGTTTTAGCATTATGTTTTGTAGTGCGATAGGGCGGTAGTTTTTGGGCT
GTTTGGTCTCCTTGTTTTTCGACAAGAGTGTGGTTTTTGCTTTTGTCATC
CAATCAGGGACTTGGATGTTGCCATTTAACGCATTATTAAACAATTGTGA
GAGTTCATTATCGAAAAATGTTAGATGTTTATACCAATAACCGATAATAA
GATCATTTCCTGGAGATTTGCTGTCTTGGAGTTTCGAGATGGATTTTCTC
ATTGTTTCACGGGTGATATCACAGTTCGTATTATTCTGGATATCAGTACA
ATATTCGTTCTCAAGGGTATGGAGCCATTCAGCATCTGAATTAAAGTTTC
CCTCCGTCTCCCAAATACCTTTCCAGAAGTTTTCAATTTCGGTTTTGGTA
GGTGGATCTTTTACGTCACTGGCACTCTCCTTGAATGAACGGTAGACAGA
TTTTGGATTATgcgaaaaaagtttgttaattCGTTTACGTTCAGATACCT
TACGTTGATATTTGAGTTTTGTTGAGATTGCCTTTAATTCGTTTTTGAGT
GATTTTTGGCGGTAAACGAGATTTCCTtttttgatatttccatatttctt
tcgAAGGCGGTTGGaaattttctgttgttttttcgTAAAAGTATTGGTTT
CCTTGCATTTTAGAATAAGCTCAATGTGGGCAATGTTTCGACGAATACta
tcaattttgttttggaGTGATGTCAGCCATTTAGGTTCGGTATGTGCCTT
GGTTTGGTTGTTTGTATCTCCTTTCAAGGTAATAGCAGAGGTATATATGA
GACAGTTAATATCTTCGAATGTAGCCCCTCTGTTTTCTTTAATGTTCGTA
AGAAACTCATTAGCTATGTCATTGACAATGTTTATCCTTTCTTTCGCTGG
TTTTCGTCGTATAAAGGTTGGTATTATACGTTCATTTTCGATAGAGTTGA
ACAACTGGTAATTGGCAGTGAAACTCTCTCTTAACTTTTGGTAAACTTCG
TTGTTATTGATATTGATAACGTGTTGCTCGTCAGCTTGATGAATTGAATT
ATTAATTTGGTCATCAACTTCTTGAGGCACGTCGTTAACAGCGAGGTGAG
GATCAACATTAAAGTCATTTTCTGCAATTATCTCTTCATTGTTAATTTCG
TTCGCAATATTTCCGTTGTTATTAGCAACGGTTTGAGTTTCACGAATATA
ACCTCTTTGTGTGATGTATAAGGCTTGTTGACGGAGATATTTTTCGTTAA
AATGAGAAAN Coding sequence (CDS) from alignment at sc0001388:12861..15270 >TCONS_00035926 ID=TCONS_00035926|Name=TCONS_00035926|organism=Clytia hemisphaerica|type=CDS|length=2112bp|location=Sequence derived from alignment at sc0001388:12861..15270 (Clytia hemisphaerica)
TTAAGCATTATGAGCGATGTGTTTATGGTAGCCTGAGAGTTCACTCTCCC
AGACTTTTCTGACTCGTTTTAGGTATTCCTTTACGACTCTTTCTTTGTTG
ATTGGACCGACGTATCCAAGATTTTCGTCTTGGCCGAGATACTTGTACGA
ATCTCCTTCCTTCACTGGGTCGATCGAGATATTGTTCATTACGATTGGTT
CTTTTGATGTTGCGATTTTACCTTTTTCGATTCGAAGATATGCGCACTTT
GTTAAGCCGAATTTCATGTCAATGTCATTCGAAAACTCCGTGACAATGTC
CAGCAAGGTTTTCATCTGAGTCAGGTTGGTAGCGAATAGTTTAAGATCGT
CAACGAAAAATAGGTTTGTGATATTCTGAGTTCGATTACCATTGGGTCCC
ATCTTATAGCCCACGagtttgtttaaaagaaatgaTAACGGGTTGAGACA
TAAGATGAATAGGATGACTGATAAACTGTCTCCTTGGAATATTCCTCTGT
TATATTTAATTTCGTCAGATACTATCGTCGTCTCGGTAGTTCGAAGATGA
ACGTTTGTTGACCATTTCGTGATAAGGTGCTCGAGTGCGGAGATGATAAC
TGGGGGAACTTTCGCAAGTTGGAGTGCTTTGATGAGCCATTGGTGTGGTA
CGCTATCAAATGCCTTCTGGTAATCTAGCCACATGGTAACAAGCGATCTC
CGATAGTGCTTAGTTTCATTCATTACGGTTTTGTTGATCAAGAGTTGCTC
TAAGCAACCCCAAACGTCCTTTTTTCCTCCAGCTTGTTCAGTTGTAACAA
TGTTGTTCGATTCGCAATGGTGTTGAACAAATTGATTGATACACGATGTG
TAGAGTTTTAGCATTATGTTTTGTAGTGCGATAGGGCGGTAGTTTTTGGG
CTGTTTGGTCTCCTTGTTTTTCGACAAGAGTGTGGTTTTTGCTTTTGTCA
TCCAATCAGGGACTTGGATGTTGCCATTTAACGCATTATTAAACAATTGT
GAGAGTTCATTATCGAAAAATGTTAGATGTTTATACCAATAACCGATAAT
AAGATCATTTCCTGGAGATTTGCTGTCTTGGAGTTTCGAGATGGATTTTC
TCATTGTTTCACGGGTGATATCACAGTTCGTATTATTCTGGATATCAGTA
CAATATTCGTTCTCAAGGGTATGGAGCCATTCAGCATCTGAATTAAAGTT
TCCCTCCGTCTCCCAAATACCTTTCCAGAAGTTTTCAATTTCGGTTTTGG
TAGGTGGATCTTTTACGTCACTGGCACTCTCCTTGAATGAACGGTAGACA
GATTTTGGATTATgcgaaaaaagtttgttaattCGTTTACGTTCAGATAC
CTTACGTTGATATTTGAGTTTTGTTGAGATTGCCTTTAATTCGTTTTTGA
GTGATTTTTGGCGGTAAACGAGATTTCCTtttttgatatttccatatttc
tttcgAAGGCGGTTGGaaattttctgttgttttttcgTAAAAGTATTGGT
TTCCTTGCATTTTAGAATAAGCTCAATGTGGGCAATGTTTCGACGAATAC
tatcaattttgttttggaGTGATGTCAGCCATTTAGGTTCGGTATGTGCC
TTGGTTTGGTTGTTTGTATCTCCTTTCAAGGTAATAGCAGAGGTATATAT
GAGACAGTTAATATCTTCGAATGTAGCCCCTCTGTTTTCTTTAATGTTCG
TAAGAAACTCATTAGCTATGTCATTGACAATGTTTATCCTTTCTTTCGCT
GGTTTTCGTCGTATAAAGGTTGGTATTATACGTTCATTTTCGATAGAGTT
GAACAACTGGTAATTGGCAGTGAAACTCTCTCTTAACTTTTGGTAAACTT
CGTTGTTATTGATATTGATAACGTGTTGCTCGTCAGCTTGATGAATTGAA
TTATTAATTTGGTCATCAACTTCTTGAGGCACGTCGTTAACAGCGAGGTG
AGGATCAACATTAAAGTCATTTTCTGCAATTATCTCTTCATTGTTAATTT
CGTTCGCAATATTTCCGTTGTTATTAGCAACGGTTTGAGTTTCACGAATA
TAACCTCTTTGTGTGATGTATAAGGCTTGTTGACGGAGATATTTTTCGTT
AAAATGAGAAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035926-exon-sc0001388-1491911889:12861..15270 | TCONS_00035926-exon-sc0001388-1491911889:12861..15270 | Clytia hemisphaerica | exon |
| TCONS_00035926-exon-sc0001388-1510915933:12861..15270 | TCONS_00035926-exon-sc0001388-1510915933:12861..15270 | Clytia hemisphaerica | exon |
| TCONS_00035926-exon-sc0001388-1575043694:12861..15270 | TCONS_00035926-exon-sc0001388-1575043694:12861..15270 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001388 | supercontig | sc0001388:12861..15270 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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