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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035925 ID=TCONS_00035925|Name=TCONS_00035925|organism=Clytia hemisphaerica|type=transcript|length=1472bp
GCGCAAAAAGTCTTACAATATAATAAATTTTGATAAAAAATTGTGACAAT
TTTGAAATTCTAAAATTCAAAATCCAGTTTACACCCTACTATGAAACCAA
GATCATCTCTATACGACAACATATAACCCAAAATGTCAAACAAAATAAAT
ACATCGAATGTGCCAGAGCTCACGAGGAAGACAAAATTGTACGAGTTGCG
AGAGAATTGTTACAACAAGCCGGTATTGACGACGATGAGAACGTTAGCCC
TCGAACGATCAGCCAACGCTACCTTCAAAAAGTTTTGAAAACCAAATTTG
AGAAGTTCGAAAGCAAAATACTCCATGGTTACGTTCAAAGAAAAGTCTCT
GCAGATCAAAACGTCGACCATTCTGCATCAAAAGAATGGCTCACCAACAA
ATATACTTCGTCTCACTTTGAAGCGTACGCATGTGCTATCCAGGAAGGTG
AAATTGGAACGAAGGATTTGATATATCGCAGAGACAGAAAGAACAACGta
ccagtaaagcatgataatAAATGTAGACTGTGTAAAAGCCAAGTTGAAGA
TATTACACACGTAATCAGCAGTTGTCCGAAAATGTCTTCACGCTACTACC
TACCAATGAGACATGATATCGTTGCTAAGTTTGTATACGAGAAAATTCGA
CATGAACACGACAAAGAATACAACGTCAGATACGATGCTGACGAGTTCAT
CACTACTGGTGGCGACCGTAAATACTGGTGGAACGTGTCCGTTAAAACAC
CTGCAAATGTTCGTCATAACAAGCCTGATTTGATCATGTGGAATAAGGCA
ACAAAAAGTTGTCATATTATTGAGTTTAGTTGTCCCAACGATATGAATGT
ATCGAAAAAGGTGAAGGAAAAAGAGGACCTCTATGGTCCATTGATTCGGG
CAATGAATATCATGTATCCCGACTACAAGTTTGTCTTTGTTCCGATTATT
GTTGGTGCTCTTGGTACTGTTCCCAAAGAACTGTTAATGAACATTAAATT
GCTTGGCTTTTCGGAAAATGAAAGCAaacaaatgataagatttatgcaac
aaaaaagTATCATCGGGACTGTAAAAATTacgaaaacatttttaaatttt
aaaatttaacatAATTCATTcacaattcaatattttttttttttttcctc
taGCCTGTTTTTCCTACTCTAATCAAGTTCATTTATAAGTCTCGTATGTT
TTTATCATGACCTTACTGCTCGGCAGCAGAGAACAGGGTTAATTTCCACC
CCGAGAATCTGTAGGCCAGAATCTTATGGGTGTAAATCAACCATTTTTCT
TTGTTCCTTTGCTAATTTAGTCTCGACATTTTCGGTAACGTTTTTACTAT
AAATTTTAACTTATaatatttcatttgattttaaCACAATTTATTGTTTT
AATCCTTGCCCTTCAGACGTCGGGCCGGAGTTTTTATTGTACATCTatat
aataattttaaatatattCTCG Run BLAST on NCBI protein sequence of TCONS_00035925-protein >TCONS_00035925-protein ID=TCONS_00035925-protein|Name=TCONS_00035925-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
MSSRYYLPMRHDIVAKFVYEKIRHEHDKEYNVRYDADEFITTGGDRKYWW
NVSVKTPANVRHNKPDLIMWNKATKSCHIIEFSCPNDMNVSKKVKEKEDL
YGPLIRAMNIMYPDYKFVFVPIIVGALGTVPKELLMNIKLLGFSENESKQ
MIRFMQQKSIIGTVKITKTFLNFKI Run BLAST on NCBI transcript from alignment at sc0001388:5108..6579 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035925 ID=TCONS_00035925|Name=TCONS_00035925|organism=Clytia hemisphaerica|type=transcript|length=1472bp|location=Sequence derived from alignment at sc0001388:5108..6579 (Clytia hemisphaerica)
CGAGaatatatttaaaattattatatAGATGTACAATAAAAACTCCGGCC
CGACGTCTGAAGGGCAAGGATTAAAACAATAAATTGTGttaaaatcaaat
gaaatattATAAGTTAAAATTTATAGTAAAAACGTTACCGAAAATGTCGA
GACTAAATTAGCAAAGGAACAAAGAAAAATGGTTGATTTACACCCATAAG
ATTCTGGCCTACAGATTCTCGGGGTGGAAATTAACCCTGTTCTCTGCTGC
CGAGCAGTAAGGTCATGATAAAAACATACGAGACTTATAAATGAACTTGA
TTAGAGTAGGAAAAACAGGCtagaggaaaaaaaaaaaaaatattgaattg
tgAATGAATTatgttaaattttaaaatttaaaaatgttttcgtAATTTTT
ACAGTCCCGATGATActtttttgttgcataaatcttatcatttgttTGCT
TTCATTTTCCGAAAAGCCAAGCAATTTAATGTTCATTAACAGTTCTTTGG
GAACAGTACCAAGAGCACCAACAATAATCGGAACAAAGACAAACTTGTAG
TCGGGATACATGATATTCATTGCCCGAATCAATGGACCATAGAGGTCCTC
TTTTTCCTTCACCTTTTTCGATACATTCATATCGTTGGGACAACTAAACT
CAATAATATGACAACTTTTTGTTGCCTTATTCCACATGATCAAATCAGGC
TTGTTATGACGAACATTTGCAGGTGTTTTAACGGACACGTTCCACCAGTA
TTTACGGTCGCCACCAGTAGTGATGAACTCGTCAGCATCGTATCTGACGT
TGTATTCTTTGTCGTGTTCATGTCGAATTTTCTCGTATACAAACTTAGCA
ACGATATCATGTCTCATTGGTAGGTAGTAGCGTGAAGACATTTTCGGACA
ACTGCTGATTACGTGTGTAATATCTTCAACTTGGCTTTTACACAGTCTAC
ATTTattatcatgctttactggtaCGTTGTTCTTTCTGTCTCTGCGATAT
ATCAAATCCTTCGTTCCAATTTCACCTTCCTGGATAGCACATGCGTACGC
TTCAAAGTGAGACGAAGTATATTTGTTGGTGAGCCATTCTTTTGATGCAG
AATGGTCGACGTTTTGATCTGCAGAGACTTTTCTTTGAACGTAACCATGG
AGTATTTTGCTTTCGAACTTCTCAAATTTGGTTTTCAAAACTTTTTGAAG
GTAGCGTTGGCTGATCGTTCGAGGGCTAACGTTCTCATCGTCGTCAATAC
CGGCTTGTTGTAACAATTCTCTCGCAACTCGTACAATTTTGTCTTCCTCG
TGAGCTCTGGCACATTCGATGTATTTATTTTGTTTGACATTTTGGGTTAT
ATGTTGTCGTATAGAGATGATCTTGGTTTCATAGTAGGGTGTAAACTGGA
TTTTGAATTTTAGAATTTCAAAATTGTCACAATTTTTTATCAAAATTTAT
TATATTGTAAGACTTTTTGCGC Coding sequence (CDS) from alignment at sc0001388:5108..6579 >TCONS_00035925 ID=TCONS_00035925|Name=TCONS_00035925|organism=Clytia hemisphaerica|type=CDS|length=528bp|location=Sequence derived from alignment at sc0001388:5108..6579 (Clytia hemisphaerica)
ttaaattttaaaatttaaaaatgttttcgtAATTTTTACAGTCCCGATGA
TActtttttgttgcataaatcttatcatttgttTGCTTTCATTTTCCGAA
AAGCCAAGCAATTTAATGTTCATTAACAGTTCTTTGGGAACAGTACCAAG
AGCACCAACAATAATCGGAACAAAGACAAACTTGTAGTCGGGATACATGA
TATTCATTGCCCGAATCAATGGACCATAGAGGTCCTCTTTTTCCTTCACC
TTTTTCGATACATTCATATCGTTGGGACAACTAAACTCAATAATATGACA
ACTTTTTGTTGCCTTATTCCACATGATCAAATCAGGCTTGTTATGACGAA
CATTTGCAGGTGTTTTAACGGACACGTTCCACCAGTATTTACGGTCGCCA
CCAGTAGTGATGAACTCGTCAGCATCGTATCTGACGTTGTATTCTTTGTC
GTGTTCATGTCGAATTTTCTCGTATACAAACTTAGCAACGATATCATGTC
TCATTGGTAGGTAGTAGCGTGAAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035925-exon-sc0001388-1491911889:5108..6579 | TCONS_00035925-exon-sc0001388-1491911889:5108..6579 | Clytia hemisphaerica | exon |
| TCONS_00035925-exon-sc0001388-1510915933:5108..6579 | TCONS_00035925-exon-sc0001388-1510915933:5108..6579 | Clytia hemisphaerica | exon |
| TCONS_00035925-exon-sc0001388-1575043694:5108..6579 | TCONS_00035925-exon-sc0001388-1575043694:5108..6579 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001388 | supercontig | sc0001388:5108..6579 . |
Blast
The following BLAST results are available for this feature:
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