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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035901 ID=TCONS_00035901|Name=TCONS_00035901|organism=Clytia hemisphaerica|type=transcript|length=2191bp
CTTGTGTCCTCTCTTCACTCACCTTTATTGACCTTTCTTATTATGGTAGG
TGGTAAACAAAATGTGGAGAacaagacaaaagaaaaagccaaaaagaata
aaaagaaagaacGGCCATCACAAGAAATTAACCCAACAATCGAACCTTTG
ATCCAATTAGGAGATTTGACAgccaaagaaaagaagaaaaagaaaaagaa
aaacaaaaagaaagctgCTTCTGATTCCCAAGAACCAGCAATAGGACAAT
TAATCGATTTAGAAGGCAcctgtgaagatgaaattttctctgattcAGTA
AGCATTCTATCTGGTGCAACAAGTATGAGTAATGATGACTACGAAGATGC
TGAACAACCACATCAGAATTCCATCTCGTCAGATTCTGAATCTGAACCTT
CagacgatgatgatgatggtgatgatgGTGCAAAGAGTGATGGAGGAGGA
AGAAGAAGACGTCCTCGGCAACGATCTCGAAGAGGTGGAAGTGACATACA
TCGTGGTAGAGGCTCGGAACGTGGCAGAGGGGGTCAAAACCGCGGTAGAG
GCGGTCAAAATCGTGGCAGAGGGGCATCTGATGGACCAAGAAGAGGTGGT
GGTGGTCCTGCATGTGGAGGCCAGCATAGAGGAAGAGGAAATGATCGGGG
AAGAGGTGCCAACCAACATCTTGGTAGAGGGGGCCTAATAAGACATCAAC
AGCTTTCCAGTGCTGCTTCGATGCCCTCTTTGAACTATGCAGAATTATCT
GAATATTTTGAGCAACAAAGACAATGGCAGGGAGGTTTTGGGGGACCATT
CTTTGGGTGATTAATGGGtgatttgatattttatttgagttttttgatat
aatttttttgatattttatttgagttttttgatataattttttcatggaa
attgatttataaatataaaaagtgACATTTTCTCAAGAAATTTGACAATT
TCTTTTAGAGGAAAAGGCTTTTTTTGTTGTTATTGTTACTGATTAAGATT
CAGGGAGCAAGTGCAAAAATTGCTAGTGAAAAATACACCATCTAACTAAT
TTCAAATGAATATTGTAAATGTTATTTATGTAAGGCGTATACCGAGGCTC
TGAATTCCCGAGTTAGAAAACCGATTTGGCAAAAAACCGAgttattatga
cgtcatcaaacgaaaattttgacgtcacaaccaaaatttcttgcttgatt
ttttatttccctaactcgattttttttgtcaaaataaaattttcgagtta
gctaactaggttttttttgtcaaattaaaattttcgagttagctatctta
tacaaaaaagtGTTGTGTATCTttgaaaactaaacaaaagcacattgttt
ttattttattttaaaaatcgaattagggaaataaaaaatcaagcaagaaa
ttttgcttgtgacgtcaaaattttcgtttgatgacgtcataactcggttt
tttgcTAACTCGGTTTTCTAACTCGGTTTttctaactcgggaattccgag
CCTTCGAATGGGTATATCTTACAGTTCTAAATTCAACAATCATATTTAAT
GAATGGCTTACTTTTGTATTGGAATAtatatgaacatatttattataaag
tctgtctcaataaaatctgcagtggagacaaaaaaggaaataagttttga
aaaaacgcGAATTaaatagcggttttgtgcttgttgaaaagatattcgaT
AGTGATTACCAAATATGGAAAAGAccaaaagattttggaaaacgaagatg
aaaatgaaggagaaaaaaatcaccctTTGTAGAATTGTTCAATGATCTTT
ATTTCATATTAAGGAAATCTTCAATCTAAGAGGGTTATCTCGATTATAGA
TTAtaattgagacagactttaattacaTTTTTCCAgtacttttttagttt
ttttatcatcttaAGCAGTGTTCTAATAGAAATTGTATCTTTTTGCTGGA
GTCAAGGCGATGAATTTTTGACTCTGCTGACTGAGATTAGTTTTGAGAGA
ACGTGTTTTTAGAACAACACGCTTacaaatatctttttcattttcttcca
tACAAGGCCAATGATAACGCTCCTGCAGGGTAagacatgggggggggggt
acttagacaAATGAAAGATGCAGGTATGTGCTGCCTTTAAGTATGCCCTT
TTCAAAGTCCCTCTAATGGtcgtaaaaaaacaaaacataaa Run BLAST on NCBI transcript from alignment at sc0001386:48482..52954- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035901 ID=TCONS_00035901|Name=TCONS_00035901|organism=Clytia hemisphaerica|type=transcript|length=4473bp|location=Sequence derived from alignment at sc0001386:48482..52954- (Clytia hemisphaerica)
CTTGTGTCCTCTCTTCACTCACCTTTATTGACCTTTCTTATTATGGTAGG
TGGTAAACAAAATGTGGAGAACAAGACAAAAGAAAAAGCCAAAAAGAATA
AAAAGAAAGAACGGCCATCACAAGAAATTAACCCAACAATCGAACCTTTG
ATCCAATTAGGAGGTAAAATTCATAATATTCACTTACATTCATTACACAT
TGTAAACTGCAGTTTTGAAATACACTTATAAAATACTAACTGATTTCATT
ATAAATATTTTTCCGGTTTGTTTATTAACATTTTTGACATTTCAATATTT
TAATATTGATTTTTATAGCCCTAAAACTTGAAGAAGATGAAATTGAAGAG
AGCCCTAGGGAACCAAATGAAGGTATGATTTTCATTTATCAAAAACTGTA
AAGAAAAGTATCAAATTGAAATTTAGAGACTAGACTGGACTTGAAAAAAA
TGTTGGTTTGCCGTCAGCCGACAAAACTTGCCGACCTAAAAACTTTTATT
GCTATTTTGATAAAAATAATTTCTTTTCTTCAAAAATTACAAAATGTAGA
CAAAAATTCCATGAATAACCAAAATAAAAACAATTTTCTGACCGTCTGAC
CCACCTCCAAAATGTAGGGTCGGGTGATGGCAAACCAAGAATTTTTGTAA
GTCCAGCCCTACTAATAACTTTGAAATTTATACTATAAATAGTTACAATG
TCACACAGTTTATTTCTTTTTGACAACAGCACTAAGAACTAAAGTTATTG
TTAATTCAGTTTGGAATTAGAAATTGCCGATCTTTCACAATGATGGACTG
CTAGTAGACACCCCTTTGTCACAGACCCGCTGGGGCCCCAGCCCCACTGG
AAAATTTGGCAAAACTTTCGTCCCCGATGGGAAGAATACCTTAGAATTTC
AGCCCCACTGAGAAATTGACTTTGATTTCATCCCCATTCGATATTCATTG
TTTAGAAATTGCGCTCCAAAACCATCCCCACTGGATTATTTAACTTTGAA
ACAATAGAATTTTTATCCCCATTGACATTTCAATCGAAATTTTTGTTCCC
GCGGTAGGAAAAATTTTCACCGGGACTGCGAGATAGGGGTGTAAGTAAAG
AGTTCCTCCCTCAGTGTTTTTTTATTACATTTAGATTTGACAGCCAAAGA
AAAGAAGAAAAAGAAAAAGAAAAACAAAAAGAAAGCTGCTTCTGATTCCC
AAGAACCAGCAATAGGACAATTAATCGATTTAGAAGGTATCAACAGATGT
TTTACTCTGTACCAGAGTGTATCTCACGTTTATCGCTTCGTAGTATACTC
TGTGCACATTGTCTGTTTGATAAAAAAGTTCCCGTACGGAGACCTCTGCG
ATGAAGTATGATTTATAGAGAGCAACACTTCTATCATCGTCTCCCCTCTT
GCACCAACACTCCATCGCAGTGGTTGGTTTGAAAAATCTCAAATGAGAAA
AGACAATGACAACAGACCTNACTCCATCGCAGTGGTTGGTTTGAAAAATC
TCAAATGATAAAAGACAATGACAACAGACCCTCTATGGCAATGAATTTTG
AAATCAGCCGTAGATACCGGGTCTATGTACAGACAACAGATGTTTAAAGT
TGAGGATAATTTCTTTTCCTCTCATTTTTTGTACTCAATACGTTTGAGCC
CAATTTAAGACGTATCAAATAAATGTTTTGACTTTGGAAAAGGTTAACGC
CAAAAGATTCGGAAGTTTCACTCAGAATTATGAAGGATTTTTCAGGCCAT
AGCTTCAACCTTAATGAAATATTTTTTCTTTGACCTTCAGGCACCTGTGA
AGATGAAATTTTCTCTGATTCAGTAAGCATTCTATCTGGTGCAACAAGTA
TGAGTAATGATGACTACGAAGATGCTGAACAACCACATCAGAATTCCATC
TCGTCAGATTCTGGTAAAACAATTGTTTTGAATGTATTCTTTTTTAAATT
CAACTTTACATTGGAAGAAATTTTCGCGGAATTTAATTTCGCGAATTTGG
GCGTAATTCGCGAAATTAAGTTCCGCGAAACACACCAAAATGGGTGAACA
CGAAACACGAATTCCGCGAAACACGAATATTCTCACAATTAAAAAAATCA
CCCCTAAAATTGGTCTTTTTAGGGCAAAATAGGACTTTTCGTAGACAAAT
AATTCCCTCAACCGCGAAATTGAATTCCGTGAAACTTTTGAAATCAGCTC
ATTCACGAAATTAAATTCCGCGAAATCTGCCATTTTGAAACTGATTCGCG
AAATTAAATTCCGCGAAAATTTCTTCTCGCGAAAATTTCTTCCCTTACAA
GGTACATTCAGGGAGAGAGAGAAGTACCATCCCTGCATGGGGAACGGGAT
TAAGATAAAACCATATTAATGATCATGTTTTCAAATTAAAAGAATTCAAT
ATAATAAAGCTAAAAACATAAATTCTAGACATTTGTAATCAAGCCATTCC
ATATCAATCGATCAAGAGCAGAGTTTTCACTTTATTTGTTATATTACTTA
TACATTGGAGTCTCTTTAACTCGTCTTCTAACTCGTCAAAGTTTTATGGT
TTTTAACAATGTCTTATAAACCTTACTCCATAACTCGAAATTTCCTTAAC
TCGAAAAAGATTGTGTTACCCGTGCGTGTTCGAGTTATGGAAACTCCACT
ATATATTCTTGAATTTTCAGAATCTGAACCTTCAGACGATGATGATGATG
GTGATGATGGTGCAAAGAGTGATGGAGGAGGAAGAAGAAGACGTCCTCGG
CAACGATCTCGAAGAGGTGGAAGTGACATACATCGTGGTAGAGGCTCGGA
ACGTGGCAGAGGGGGTCAAAACCGCGGTAGAGGCGGTCAAAATCGTGGCA
GAGGGGCATCTGATGGACCAAGAAGAGGTGGTGGTGGTCCTGCATGTGGA
GGCCAGCATAGAGGAAGAGGAAATGATCGGGGAAGAGGTGCCAACCAACA
TCTTGGTAGAGGGGGCCTAATAAGACATCAACAGCTTTCCAGTGCTGCTT
CGATGCCCTCTTTGAACTATGCAGAATTATCTGAATATTTTGAGCAACAA
AGACAATGGCAGGGAGGTTTTGGGGGACCATTCTTTGGGTGATTAATGGG
TGATTTGATATTTTATTTGAGTTTTTTGATATAATTTTTTTGATATTTTA
TTTGAGTTTTTTGATATAATTTTTTCATGGAAATTGATTTATAAATATAA
AAAGTGACATTTTCTCAAGAAATTTGACAATTTCTTTTAGAGGAAAAGGC
TTTTTTTGTTGTTATTGTTACTGATTAAGATTCAGGGAGCAAGTGCAAAA
ATTGCTAGTGAAAAATACACCATCTAACTAATTTCAAATGAATATTGTAA
ATGTTATTTATGTAAGGCGTATACCGAGGCTCTGAATTCCCGAGTTAGAA
AACCGATTTGGCAAAAAACCGAGTTATTATGACGTCATCAAACGAAAATT
TTGACGTCACAACCAAAATTTCTTGCTTGATTTTTTATTTCCCTAACTCG
ATTTTTTTTGTCAAAATAAAATTTTCGAGTTAGCTAACTAGGTTTTTTTT
GTCAAATTAAAATTTTCGAGTTAGCTATCTTATACAAAAAAGTGTTGTGT
ATCTTTGAAAACTAAACAAAAGCACATTGTTTTTATTTTATTTTAAAAAT
CGAATTAGGGAAATAAAAAATCAAGCAAGAAATTTTGCTTGTGACGTCAA
AATTTTCGTTTGATGACGTCATAACTCGGTTTTTTGCTAACTCGGTTTTC
TAACTCGGTTTTTCTAACTCGGGAATTCCGAGCCTTCGAATGGGTATATC
TTACAGTTCTAAATTCAACAATCATATTTAATGAATGGCTTACTTTTGTA
TTGGAATATATATGAACATATTTATTATAAAGTCTGTCTCAATAAAATCT
GCAGTGGAGACAAAAAAGGAAATAAGTTTTGAAAAAACGCGAATTAAATA
GCGGTTTTGTGCTTGTTGAAAAGATATTCGATAGTGATTACCAAATATGG
AAAAGACCAAAAGATTTTGGAAAACGAAGATGAAAATGAAGGAGAAAAAA
ATCACCCTTTGTAGAATTGTTCAATGATCTTTATTTCATATTAAGGAAAT
CTTCAATCTAAGAGGGTTATCTCGATTATAGATTATAATTGAGACAGACT
TTAATTACATTTTTCCAGTACTTTTTTAGTTTTTTTATCATCTTAAGCAG
TGTTCTAATAGAAATTGTATCTTTTTGCTGGAGTCAAGGCGATGAATTTT
TGACTCTGCTGACTGAGATTAGTTTTGAGAGAACGTGTTTTTAGAACAAC
ACGCTTACAAATATCTTTTTCATTTTCTTCCATACAAGGCCAATGATAAC
GCTCCTGCAGGGTAAGACATGGGGGGGGGGGTACTTAGACAAATGAAAGA
TGCAGGTATGTGCTGCCTTTAAGTATGCCCTTTTCAAAGTCCCTCTAATG
GTCGTAAAAAAACAAAACATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035901-exon-sc0001386-1575043694:52792..52954 | TCONS_00035901-exon-sc0001386-1575043694:52792..52954 | Clytia hemisphaerica | exon |
| TCONS_00035901-exon-sc0001386-1575043694:51719..51820 | TCONS_00035901-exon-sc0001386-1575043694:51719..51820 | Clytia hemisphaerica | exon |
| TCONS_00035901-exon-sc0001386-1575043694:51042..51164 | TCONS_00035901-exon-sc0001386-1575043694:51042..51164 | Clytia hemisphaerica | exon |
| TCONS_00035901-exon-sc0001386-1575043694:48482..50284 | TCONS_00035901-exon-sc0001386-1575043694:48482..50284 | Clytia hemisphaerica | exon |
| TCONS_00035901-exon-sc0001386-1510915933:52792..52954 | TCONS_00035901-exon-sc0001386-1510915933:52792..52954 | Clytia hemisphaerica | exon |
| TCONS_00035901-exon-sc0001386-1510915933:51719..51820 | TCONS_00035901-exon-sc0001386-1510915933:51719..51820 | Clytia hemisphaerica | exon |
| TCONS_00035901-exon-sc0001386-1510915933:51042..51164 | TCONS_00035901-exon-sc0001386-1510915933:51042..51164 | Clytia hemisphaerica | exon |
| TCONS_00035901-exon-sc0001386-1510915933:48482..50284 | TCONS_00035901-exon-sc0001386-1510915933:48482..50284 | Clytia hemisphaerica | exon |
| TCONS_00035901-exon-sc0001386-1491911889:52792..52954 | TCONS_00035901-exon-sc0001386-1491911889:52792..52954 | Clytia hemisphaerica | exon |
| TCONS_00035901-exon-sc0001386-1491911889:51719..51820 | TCONS_00035901-exon-sc0001386-1491911889:51719..51820 | Clytia hemisphaerica | exon |
| TCONS_00035901-exon-sc0001386-1491911889:51042..51164 | TCONS_00035901-exon-sc0001386-1491911889:51042..51164 | Clytia hemisphaerica | exon |
| TCONS_00035901-exon-sc0001386-1491911889:48482..50284 | TCONS_00035901-exon-sc0001386-1491911889:48482..50284 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001386 | supercontig | sc0001386:48482..52954 - |
Blast
The following BLAST results are available for this feature:
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