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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035899 ID=TCONS_00035899|Name=TCONS_00035899|organism=Clytia hemisphaerica|type=transcript|length=2893bp
CCATCACAAGAAATTAACCCAACAATCGAACCTTTGATCCAATTAGGAGC
CCTAAAACTTGAAGAAGATGAAATTGAAGAGAGCCCTAGGGAACCAAATG
AAGGTATGATTTTCATTTATCAAAAACTGTAAAGAAAAGTATCAAATTGA
AATTTAGAGACTAGACTggacttgaaaaaaatgttggtttgccgtcagcc
gacaaaacttgccgacctaaaaacttttattgctattttgataaaaataa
tttcttttcttcaaaaattacaaaatgtagacaaaaattccatgaataac
caaaataaaaacaattttctgaCCGTctgacccacctccaaaatgtAGGG
TCGGGTGATGGCAAACCAAGAATTTTTGTAAGTCCAGCCCTACTAATAAC
TTTGAAATTTATACTATAAATAGTTACAATGTCACACAGTTTATTTCTTT
TTGACAACAGCACTAAGAACTAAAGTTATTGTTAATTCAGTTTGGAATTA
GAAATTGCCGATCTTTCACAATGATGGACTGCTAGTAGACACCCctttgt
cacagacccgctggggccccagccccactggaaaatttggcaaaacttTC
GTCCCCGATGGGAAGAATaccttagaatttcagccccactgagaaattga
ctttgatttcatccccattcgatattcattgtttagaaattgcgctccaa
aaccatccccactggattatttaactttgaaacaatagaatttttatccc
cattgacatttcaatcgaaatttttgTTCCCGCGGTAGGAAAAATTTTCA
CCGGGACTGCGAGATAGGGGTGTAAGTAAAGAGTTCCTCCCTCAGtgttt
ttttattacatttaGATTTGACAgccaaagaaaagaagaaaaagaaaaag
aaaaacaaaaagaaagctgCTTCTGATTCCCAAGAACCAGCAATAGGACA
ATTAATCGATTTAGAAGGCAcctgtgaagatgaaattttctctgattcAG
TAAGCATTCTATCTGGTGCAACAAGTATGAGTAATGATGACTACGAAGAT
GCTGAACAACCACATCAGAATTCCATCTCGTCAGATTCTGAATCTGAACC
TTCagacgatgatgatgatggtgatgatgGTGCAAAGAGTGATGGAGGAG
GAAGAAGAAGACGTCCTCGGCAACGATCTCGAAGAGGTGGAAGTGACATA
CATCGTGGTAGAGGCTCGGAACGTGGCAGAGGGGGTCAAAACCGCGGTAG
AGGCGGTCAAAATCGTGGCAGAGGGGCATCTGATGGACCAAGAAGAGGTG
GTGGTGGTCCTGCATGTGGAGGCCAGCATAGAGGAAGAGGAAATGATCGG
GGAAGAGGTGCCAACCAACATCTTGGTAGAGGGGGCCTAATAAGACATCA
ACAGCTTTCCAGTGCTGCTTCGATGCCCTCTTTGAACTATGCAGAATTAT
CTGAATATTTTGAGCAACAAAGACAATGGCAGGGAGGTTTTGGGGGACCA
TTCTTTGGGTGATTAATGGGtgatttgatattttatttgagttttttgat
ataatttttttgatattttatttgagttttttgatataattttttcatgg
aaattgatttataaatataaaaagtgACATTTTCTCAAGAAATTTGACAA
TTTCTTTTAGAGGAAAAGGCTTTTTTTGTTGTTATTGTTACTGATTAAGA
TTCAGGGAGCAAGTGCAAAAATTGCTAGTGAAAAATACACCATCTAACTA
ATTTCAAATGAATATTGTAAATGTTATTTATGTAAGGCGTATACCGAGGC
TCTGAATTCCCGAGTTAGAAAACCGATTTGGCAAAAAACCGAgttattat
gacgtcatcaaacgaaaattttgacgtcacaaccaaaatttcttgcttga
ttttttatttccctaactcgattttttttgtcaaaataaaattttcgagt
tagctaactaggttttttttgtcaaattaaaattttcgagttagctatct
tatacaaaaaagtGTTGTGTATCTttgaaaactaaacaaaagcacattgt
ttttattttattttaaaaatcgaattagggaaataaaaaatcaagcaaga
aattttgcttgtgacgtcaaaattttcgtttgatgacgtcataactcggt
tttttgcTAACTCGGTTTTCTAACTCGGTTTttctaactcgggaattccg
agCCTTCGAATGGGTATATCTTACAGTTCTAAATTCAACAATCATATTTA
ATGAATGGCTTACTTTTGTATTGGAATAtatatgaacatatttattataa
agtctgtctcaataaaatctgcagtggagacaaaaaaggaaataagtttt
gaaaaaacgcGAATTaaatagcggttttgtgcttgttgaaaagatattcg
aTAGTGATTACCAAATATGGAAAAGAccaaaagattttggaaaacgaaga
tgaaaatgaaggagaaaaaaatcaccctTTGTAGAATTGTTCAATGATCT
TTATTTCATATTAAGGAAATCTTCAATCTAAGAGGGTTATCTCGATTATA
GATTAtaattgagacagactttaattacaTTTTTCCAgtacttttttagt
ttttttatcatcttaAGCAGTGTTCTAATAGAAATTGTATCTTTTTGCTG
GAGTCAAGGCGATGAATTTTTGACTCTGCTGACTGAGATTAGTTTTGAGA
GAACGTGTTTTTAGAACAACACGCTTacaaatatctttttcattttcttc
catACAAGGCCAATGATAACGCTCCTGCAGGGTAagacatgggggggggg
gtacttagacaAATGAAAGATGCAGGTATGTGCTGCCTTTAAGTATGCCC
TTTTCAAAGTCCCTCTAATGGtcgtaaaaaaacaaaacataaa Run BLAST on NCBI transcript from alignment at sc0001386:48482..52840- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035899 ID=TCONS_00035899|Name=TCONS_00035899|organism=Clytia hemisphaerica|type=transcript|length=4359bp|location=Sequence derived from alignment at sc0001386:48482..52840- (Clytia hemisphaerica)
CCATCACAAGAAATTAACCCAACAATCGAACCTTTGATCCAATTAGGAGG
TAAAATTCATAATATTCACTTACATTCATTACACATTGTAAACTGCAGTT
TTGAAATACACTTATAAAATACTAACTGATTTCATTATAAATATTTTTCC
GGTTTGTTTATTAACATTTTTGACATTTCAATATTTTAATATTGATTTTT
ATAGCCCTAAAACTTGAAGAAGATGAAATTGAAGAGAGCCCTAGGGAACC
AAATGAAGGTATGATTTTCATTTATCAAAAACTGTAAAGAAAAGTATCAA
ATTGAAATTTAGAGACTAGACTGGACTTGAAAAAAATGTTGGTTTGCCGT
CAGCCGACAAAACTTGCCGACCTAAAAACTTTTATTGCTATTTTGATAAA
AATAATTTCTTTTCTTCAAAAATTACAAAATGTAGACAAAAATTCCATGA
ATAACCAAAATAAAAACAATTTTCTGACCGTCTGACCCACCTCCAAAATG
TAGGGTCGGGTGATGGCAAACCAAGAATTTTTGTAAGTCCAGCCCTACTA
ATAACTTTGAAATTTATACTATAAATAGTTACAATGTCACACAGTTTATT
TCTTTTTGACAACAGCACTAAGAACTAAAGTTATTGTTAATTCAGTTTGG
AATTAGAAATTGCCGATCTTTCACAATGATGGACTGCTAGTAGACACCCC
TTTGTCACAGACCCGCTGGGGCCCCAGCCCCACTGGAAAATTTGGCAAAA
CTTTCGTCCCCGATGGGAAGAATACCTTAGAATTTCAGCCCCACTGAGAA
ATTGACTTTGATTTCATCCCCATTCGATATTCATTGTTTAGAAATTGCGC
TCCAAAACCATCCCCACTGGATTATTTAACTTTGAAACAATAGAATTTTT
ATCCCCATTGACATTTCAATCGAAATTTTTGTTCCCGCGGTAGGAAAAAT
TTTCACCGGGACTGCGAGATAGGGGTGTAAGTAAAGAGTTCCTCCCTCAG
TGTTTTTTTATTACATTTAGATTTGACAGCCAAAGAAAAGAAGAAAAAGA
AAAAGAAAAACAAAAAGAAAGCTGCTTCTGATTCCCAAGAACCAGCAATA
GGACAATTAATCGATTTAGAAGGTATCAACAGATGTTTTACTCTGTACCA
GAGTGTATCTCACGTTTATCGCTTCGTAGTATACTCTGTGCACATTGTCT
GTTTGATAAAAAAGTTCCCGTACGGAGACCTCTGCGATGAAGTATGATTT
ATAGAGAGCAACACTTCTATCATCGTCTCCCCTCTTGCACCAACACTCCA
TCGCAGTGGTTGGTTTGAAAAATCTCAAATGAGAAAAGACAATGACAACA
GACCTNACTCCATCGCAGTGGTTGGTTTGAAAAATCTCAAATGATAAAAG
ACAATGACAACAGACCCTCTATGGCAATGAATTTTGAAATCAGCCGTAGA
TACCGGGTCTATGTACAGACAACAGATGTTTAAAGTTGAGGATAATTTCT
TTTCCTCTCATTTTTTGTACTCAATACGTTTGAGCCCAATTTAAGACGTA
TCAAATAAATGTTTTGACTTTGGAAAAGGTTAACGCCAAAAGATTCGGAA
GTTTCACTCAGAATTATGAAGGATTTTTCAGGCCATAGCTTCAACCTTAA
TGAAATATTTTTTCTTTGACCTTCAGGCACCTGTGAAGATGAAATTTTCT
CTGATTCAGTAAGCATTCTATCTGGTGCAACAAGTATGAGTAATGATGAC
TACGAAGATGCTGAACAACCACATCAGAATTCCATCTCGTCAGATTCTGG
TAAAACAATTGTTTTGAATGTATTCTTTTTTAAATTCAACTTTACATTGG
AAGAAATTTTCGCGGAATTTAATTTCGCGAATTTGGGCGTAATTCGCGAA
ATTAAGTTCCGCGAAACACACCAAAATGGGTGAACACGAAACACGAATTC
CGCGAAACACGAATATTCTCACAATTAAAAAAATCACCCCTAAAATTGGT
CTTTTTAGGGCAAAATAGGACTTTTCGTAGACAAATAATTCCCTCAACCG
CGAAATTGAATTCCGTGAAACTTTTGAAATCAGCTCATTCACGAAATTAA
ATTCCGCGAAATCTGCCATTTTGAAACTGATTCGCGAAATTAAATTCCGC
GAAAATTTCTTCTCGCGAAAATTTCTTCCCTTACAAGGTACATTCAGGGA
GAGAGAGAAGTACCATCCCTGCATGGGGAACGGGATTAAGATAAAACCAT
ATTAATGATCATGTTTTCAAATTAAAAGAATTCAATATAATAAAGCTAAA
AACATAAATTCTAGACATTTGTAATCAAGCCATTCCATATCAATCGATCA
AGAGCAGAGTTTTCACTTTATTTGTTATATTACTTATACATTGGAGTCTC
TTTAACTCGTCTTCTAACTCGTCAAAGTTTTATGGTTTTTAACAATGTCT
TATAAACCTTACTCCATAACTCGAAATTTCCTTAACTCGAAAAAGATTGT
GTTACCCGTGCGTGTTCGAGTTATGGAAACTCCACTATATATTCTTGAAT
TTTCAGAATCTGAACCTTCAGACGATGATGATGATGGTGATGATGGTGCA
AAGAGTGATGGAGGAGGAAGAAGAAGACGTCCTCGGCAACGATCTCGAAG
AGGTGGAAGTGACATACATCGTGGTAGAGGCTCGGAACGTGGCAGAGGGG
GTCAAAACCGCGGTAGAGGCGGTCAAAATCGTGGCAGAGGGGCATCTGAT
GGACCAAGAAGAGGTGGTGGTGGTCCTGCATGTGGAGGCCAGCATAGAGG
AAGAGGAAATGATCGGGGAAGAGGTGCCAACCAACATCTTGGTAGAGGGG
GCCTAATAAGACATCAACAGCTTTCCAGTGCTGCTTCGATGCCCTCTTTG
AACTATGCAGAATTATCTGAATATTTTGAGCAACAAAGACAATGGCAGGG
AGGTTTTGGGGGACCATTCTTTGGGTGATTAATGGGTGATTTGATATTTT
ATTTGAGTTTTTTGATATAATTTTTTTGATATTTTATTTGAGTTTTTTGA
TATAATTTTTTCATGGAAATTGATTTATAAATATAAAAAGTGACATTTTC
TCAAGAAATTTGACAATTTCTTTTAGAGGAAAAGGCTTTTTTTGTTGTTA
TTGTTACTGATTAAGATTCAGGGAGCAAGTGCAAAAATTGCTAGTGAAAA
ATACACCATCTAACTAATTTCAAATGAATATTGTAAATGTTATTTATGTA
AGGCGTATACCGAGGCTCTGAATTCCCGAGTTAGAAAACCGATTTGGCAA
AAAACCGAGTTATTATGACGTCATCAAACGAAAATTTTGACGTCACAACC
AAAATTTCTTGCTTGATTTTTTATTTCCCTAACTCGATTTTTTTTGTCAA
AATAAAATTTTCGAGTTAGCTAACTAGGTTTTTTTTGTCAAATTAAAATT
TTCGAGTTAGCTATCTTATACAAAAAAGTGTTGTGTATCTTTGAAAACTA
AACAAAAGCACATTGTTTTTATTTTATTTTAAAAATCGAATTAGGGAAAT
AAAAAATCAAGCAAGAAATTTTGCTTGTGACGTCAAAATTTTCGTTTGAT
GACGTCATAACTCGGTTTTTTGCTAACTCGGTTTTCTAACTCGGTTTTTC
TAACTCGGGAATTCCGAGCCTTCGAATGGGTATATCTTACAGTTCTAAAT
TCAACAATCATATTTAATGAATGGCTTACTTTTGTATTGGAATATATATG
AACATATTTATTATAAAGTCTGTCTCAATAAAATCTGCAGTGGAGACAAA
AAAGGAAATAAGTTTTGAAAAAACGCGAATTAAATAGCGGTTTTGTGCTT
GTTGAAAAGATATTCGATAGTGATTACCAAATATGGAAAAGACCAAAAGA
TTTTGGAAAACGAAGATGAAAATGAAGGAGAAAAAAATCACCCTTTGTAG
AATTGTTCAATGATCTTTATTTCATATTAAGGAAATCTTCAATCTAAGAG
GGTTATCTCGATTATAGATTATAATTGAGACAGACTTTAATTACATTTTT
CCAGTACTTTTTTAGTTTTTTTATCATCTTAAGCAGTGTTCTAATAGAAA
TTGTATCTTTTTGCTGGAGTCAAGGCGATGAATTTTTGACTCTGCTGACT
GAGATTAGTTTTGAGAGAACGTGTTTTTAGAACAACACGCTTACAAATAT
CTTTTTCATTTTCTTCCATACAAGGCCAATGATAACGCTCCTGCAGGGTA
AGACATGGGGGGGGGGGTACTTAGACAAATGAAAGATGCAGGTATGTGCT
GCCTTTAAGTATGCCCTTTTCAAAGTCCCTCTAATGGTCGTAAAAAAACA
AAACATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035899-exon-sc0001386-1575043694:52792..52840 | TCONS_00035899-exon-sc0001386-1575043694:52792..52840 | Clytia hemisphaerica | exon |
| TCONS_00035899-exon-sc0001386-1575043694:51719..52636 | TCONS_00035899-exon-sc0001386-1575043694:51719..52636 | Clytia hemisphaerica | exon |
| TCONS_00035899-exon-sc0001386-1575043694:51042..51164 | TCONS_00035899-exon-sc0001386-1575043694:51042..51164 | Clytia hemisphaerica | exon |
| TCONS_00035899-exon-sc0001386-1575043694:48482..50284 | TCONS_00035899-exon-sc0001386-1575043694:48482..50284 | Clytia hemisphaerica | exon |
| TCONS_00035899-exon-sc0001386-1510915933:52792..52840 | TCONS_00035899-exon-sc0001386-1510915933:52792..52840 | Clytia hemisphaerica | exon |
| TCONS_00035899-exon-sc0001386-1510915933:51719..52636 | TCONS_00035899-exon-sc0001386-1510915933:51719..52636 | Clytia hemisphaerica | exon |
| TCONS_00035899-exon-sc0001386-1510915933:51042..51164 | TCONS_00035899-exon-sc0001386-1510915933:51042..51164 | Clytia hemisphaerica | exon |
| TCONS_00035899-exon-sc0001386-1510915933:48482..50284 | TCONS_00035899-exon-sc0001386-1510915933:48482..50284 | Clytia hemisphaerica | exon |
| TCONS_00035899-exon-sc0001386-1491911889:52792..52840 | TCONS_00035899-exon-sc0001386-1491911889:52792..52840 | Clytia hemisphaerica | exon |
| TCONS_00035899-exon-sc0001386-1491911889:51719..52636 | TCONS_00035899-exon-sc0001386-1491911889:51719..52636 | Clytia hemisphaerica | exon |
| TCONS_00035899-exon-sc0001386-1491911889:51042..51164 | TCONS_00035899-exon-sc0001386-1491911889:51042..51164 | Clytia hemisphaerica | exon |
| TCONS_00035899-exon-sc0001386-1491911889:48482..50284 | TCONS_00035899-exon-sc0001386-1491911889:48482..50284 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001386 | supercontig | sc0001386:48482..52840 - |
Blast
The following BLAST results are available for this feature:
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