TCONS_00035898 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035898
Unique NameTCONS_00035898
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3540

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035898 ID=TCONS_00035898|Name=TCONS_00035898|organism=Clytia hemisphaerica|type=transcript|length=3540bp
TCATGGAACACAGCCAGTGTTTAAATTACGCCGCATGTatttatatttgg
aaaaaagaaCACTTGTTTTATGATGACTACAAAGGACccattcttaattt
ttagaataaaaggaaatatagaaaaataaataaacaatgtCAGAGAAAGG
TGGCTATGATGTGAAATTTGTTGGTGTTGAACCTCTTAATGTGACATGTT
CaatttgtttgtttacattgcgAGAACCAATGCAAGCTGAAGAATGTGGT
CACAGGTTTTGTAAAAGTTGTGTGGAAGAACTTCCAAATGGtCAAAATGG
TAATCCATTATGTCCAGAAGACCGCAGTGAGATGATTCTTTTTCGTGACA
AAGGAAGGCAAAGGGAAATTCTGCAGAATATAGTCTATTGCTCATATTTC
GACGATGGATGTGGTTGGACAAAAGAATTGAACCATTTCGAAGATCACAT
TAACGTAGAATGTCAATTTGTCCCAATTAAATGCCAAAACATAGGATGTA
TGGACAATATTCAAAGAAGATATTTGTCGAAACATTGTGATGAAGAGTGT
CTATACAGAATCATCACTTGTCGTTTTTGCACCATTACCTATGCCTTCCA
TCTCGAAAAGGACCACGTTGGTTTTTGTACGGAATTTCCAATATGCTGTG
AAAATTGTTCTGAAGGAGATATTCCAAGGTCTAAGATGGAGACTCACATA
TCTGAAGAGTGTACAAAAGTACCTCACCCTTGTCAATATTCATCACTTGG
GTGTGAAGCAAAGTTTACTGCAGAAGACTCATCTAAACACACCTCCGAAG
CTTCAGAATATCATTTGAGTTTAgcaatcaataaaatcaaagttCAAAAT
GATGAAATCCAATCATTGAAAGTTGTCCAAGAAGACATCATGGATAGATT
GAAAAGAATTGAAGACAACTACAAACCACCGATCGTGTCGCCTAAAATTT
TGAGTGATGAAcatatttggaaaatatatcAATTCTCAAAAAAGCTGGAA
AAAGCTCAACGGGACATTGGTTTTTCCTTGACTAGGCGTTTTTATACTTC
TCAAGGAcataaaataaagataaaattcTTCCCGAATGGTGATGATTGTT
TTGATGATTATGCTGCTATTCTTTTCTCAACTGAGACAGGCAGCTTCGAT
GATACCTTGAGATGGCCTATGAAAGCTAAAATCGAGTTTTGTACAATCAA
TGCAGACTGGGAATGGGAATTCAGTGGATCAATAGATACAAGGTCAGGAG
CAGGGAAAAGTTTTCACAAGCCTCCTCATTATTGTGAAGGGTACGGAGAC
CAACAATTTATGGAAATAGATTATTTTCCAACCGACTATAATGACTGTTT
GGCTTTGAAGATAAAAGTGATATATTGAAGAGACTTGTGGttgtttttat
ctatttttatgTTGCTCTTTCTAATACCAATCAATTATCAAGGTGATTGG
ATTACAAACAAGGATGGATCGAATGTTATTATTCAGTGTGCCCCTGAAAA
AGAAGCTCGAAAGAATTTCATTATGATGATTTTTGCTGTAAATTTCTTGC
AATAACATCAGATTTTTTCACATTGCTGGTGGAAGTCGGTCAATTTCATT
ATGATGATTTTTGCTGTAAATTTCTTACAATAACATCAGATTTTTTCACA
TTGTTGGTGGAAGTCGGTCAATTTCATTATTATCTTCCAGGTGTTATAAG
AGTAGAGCGATAAATTTATCTCGTAGAACCGCGATCTTAGAAAGTTAGCA
ACTAAGTAATTGGTTAGCTTCGAATTTGATAGTATCACCACGAGTCATGG
TATGGTACCACTGATGTATGTTATCTCATAGCATTTAAATGACTACTCAA
ATTATTAACGCGCATTTGTTACCATCGCGTTATTTACAACTATTTAACAA
AATTTTCcgacataatttttgaaaaggggtAACCTTTTGCTTTTGCGTTA
ATACATTTTCGCACTCATTTTTcccgaaaccttcacactaccaatcggca
gTATGTTAGTGAGGCACAGGGTGCCTTAAAGGATGATGGgatgttaggga
aatatggtgagaGACTCTCTACGTTCACTGATCGAACTGATATATCACTC
TCTCTCAAACCGGTGTAGCGGATTATTTTAACTCCCTTTAAAAGATAACT
CCCCCAGTCATAATAAACTTGTAAAAAACACTCCCCTAGAGTAGAAATTA
TCTAGGAAATTGTAACTCccttagtaaataatgactccccAAAACCCTTT
TTCTAAAGAGGTAGGGAGTTAAATAAAACTAGTTGGATAAGACTCCCCTT
CTCAAATGCCAAGCAGAAGAAGTCGTTGTATTGCATTGCATTAACCCTAA
CTAACCCTAACACACTGCATTCGCAAATCTTGGAAACTTTGCACTCGTCC
TTGTCCCAAGGGACCCAAAAAAAACCAAAGAGAATCTTTAGAATTAAAGG
TTCAATTTGGAAATTTTATAGATATCCTAATTATTTGTTACTTTTGTACC
TTTCTTTGTTGTTAATTTCCAACAATTTTTCAAAAGCTTAACTACATTAA
CTTGATCAAAATATGGTGTCCCTTTATTCGATTCACTACCATGTGTTGCC
AAGTCATCACAAATTTGCATTGTAAGATTCCGAACTTCAGACTTAGACTG
AAAATGGATCACTTCACCTTTCCCGACGTATGGTTCGTTATTGTACATGG
GGTTGTAAATCCACCATTTTATTGTATATGATTTTTCATTGAATCAGCCC
TTTAAGCGAATCGTTGAAATGTTTTCAAATACATTGAATTAATACAAAAG
CTTCTTTTGTGGCTTGTCCTTACAAAACTGGTAATAGAGAACGAAGAAAC
CCATCAGGAAAAATTCTGCCCTGTCAATTTTTGAATCAAGCACATCTAGA
TGTTTACCCAAGGAACACAACGAACAAGTATACCCAATTTCATCCATCAG
GCAACATTGAAAGTCTTCAGGCTGCCTTAGATTTTTCTAGTATATGAAGT
ATCAAACAGACACGCATTCTTAGATTGAAGTTAGGGGGAGTCATTATAAA
CCAGGGGGAGTCTAAATTTGCTAGGAAATATTAACTCTAGGGAGTCATAA
TTTActagtttataagaactggGGAGTCATAATAAACTAGTGTATTTTAA
CTGGGGAGTCCTGATAAACTAGTGTATTTTAACTGGGGAGTCATAATAAA
CTAGTGTATTTTAACTGGGGAGTCACAATAATCTAGTTTATTATGACTGG
GACTGGGGGGTTATAATTTAGGGGAGTTGAAATTAACTGTGACAccggct
gataatcgaagtatcgaATGATGTCAAATAAACTTGTAAAGCTCAAAATG
GAAATGTAGAACGATAAATTCGGTACATATTCTGTTTATGTAAATAAAta
aggaatttaattttgatgtATTGTAATGACATTGTATTCGTTTTATTTTT
TCCCAGATATTTTACCAATTCATCAATAGATAATGTTAATTATACCTAGG
GAATTTTTCAGACGATTTTAATGTTCAAAGCTGATCTACC
Run BLAST on NCBI

protein sequence of TCONS_00035898-protein

>TCONS_00035898-protein ID=TCONS_00035898-protein|Name=TCONS_00035898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=413bp
MSEKGGYDVKFVGVEPLNVTCSICLFTLREPMQAEECGHRFCKSCVEELP
NGQNGNPLCPEDRSEMILFRDKGRQREILQNIVYCSYFDDGCGWTKELNH
FEDHINVECQFVPIKCQNIGCMDNIQRRYLSKHCDEECLYRIITCRFCTI
TYAFHLEKDHVGFCTEFPICCENCSEGDIPRSKMETHISEECTKVPHPCQ
YSSLGCEAKFTAEDSSKHTSEASEYHLSLAINKIKVQNDEIQSLKVVQED
IMDRLKRIEDNYKPPIVSPKILSDEHIWKIYQFSKKLEKAQRDIGFSLTR
RFYTSQGHKIKIKFFPNGDDCFDDYAAILFSTETGSFDDTLRWPMKAKIE
FCTINADWEWEFSGSIDTRSGAGKSFHKPPHYCEGYGDQQFMEIDYFPTD
YNDCLALKIKVIY
Run BLAST on NCBI

transcript from alignment at sc0001386:39684..47930-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035898 ID=TCONS_00035898|Name=TCONS_00035898|organism=Clytia hemisphaerica|type=transcript|length=8247bp|location=Sequence derived from alignment at sc0001386:39684..47930- (Clytia hemisphaerica)
TCATGGAACACAGCCAGTGTTTAAATTACGCCGCATGTATTTATATTTGG
AAAAAAGAACACTTGTTTTATGATGACTACAAAGGACCCATTCTTAATTT
TTAGAATAAAAGGAAATATAGAAAAATAAATAAACAATGTCAGAGAAAGG
TGGCTATGATGTGAAATTTGTTGGTGTTGAACCTCTTAATGTGACATGTT
CAATTTGTTTGTTTACATTGCGAGAACCAATGCAAGCTGAAGAATGTGGT
CACAGGTTTTGTAAAAGTTGTGTGGAAGAACTTCCAAATGGGTATGGTAA
ATTTCAAGTGAAGGTCTTGTAAAAAAGTAGAAATTTTTCGAAATTTGTCT
TTTTAGTTTCAATATAAATTTATGAACCCTTTCAAAACTGTCATAGTTAT
CAAAATTTGGAAATCAACGGTTTTCATGGAATAGTCCGGGCTGGTTTGTC
CATATATCAGATTTCGCTCGATTCCTCTGTTAAAAGTAGTTTCTCTATAG
ATTCTTTTTATTTGGCCAAAATTAAACCTGTTTGCAATTAAAAATAAATT
TCTATGTACTTTACAGACCAAGGAATGTTACGACGAATGATGGAGATATC
CATATTCCAAAACTATTTAGTCAATAGGTTATCCCTAACCTCAGTAAATT
ATCTCCAATCTTTAAATTTCCTTATCATCTTTTATTAATTAACGGTATTG
CTTTTAGCTAGCCTAAACCTTAGGCCTAGAAATGGCCTAAATTATTCTAG
TCTGTAAAATACACACGAATGACGCAATCTTGATAATTTTTTGCAGACAA
TTTGGAAATCAGCATATCAATATCATAAATTTACTTTACTTTAAGAGATA
TTAAAGAAATTGTGGTCTTTAATACACAAAAAAAATGCAAACAGGTCTAT
TTCCATTCCAAATAGGCCAAATAACAAGAATCCATTTAACAGAGCAATCG
AGCGGATTGGCAGCCCTGCCTTGAACCTCGTTTGCATTATTTTGTGTATG
TTTATAATAATTCATTTTTCTGATTTTCAGTCAAAATGGTAATCCATTAT
GTCCAGAAGACCGCAGTGAGATGATTGTAAGATAAAAGTTGTTCACTGAT
CATTAACCTCCTTCACTTTCATTAAACCTTGCATTTTTAGGATTTTAGGA
TCTTTTAAGATTTTCTTCCTAAGTTCTTTTGTGATCTCTACTAATAAAAA
CTGTGTTTATTGAGTTTCAATGTCTCCTTAAAATACATACAGCTCAAAAT
TTTGATCATTGTCTTTCTATTTGCAGCTTTTTCGTGACAAAGGAAGGCAA
AGGGAAATTCTGCAGAATATAGTCTATTGCTCATATTTCGACGATGGATG
TGGTTGGACAAAAGAATTGAACCATTTCGAAGTTTGTATTTACTTACTTT
CAATGAAACTTCTTAAAACCGTCGCTTTGGAAGTTCGTTTGTTCTTACAG
TGTACAATGATTTTACTTCCGCAAATATTTTTATTATTGTAAATAGCAGG
CTTCTTTCGAGTATTTTTAGATAAGGCATTTACACTGTTGTCTTGAGTAT
TTTCGACTCTAAATTTCAGGATCACATTAACGTAGAATGTCAATTTGTCC
CAATTAAATGCCAAAACATAGGATGTATGGACAATATTCAAAGAAGATAT
TTGTCGAAACATTGTGATGAAGAGTGTCTATACAGAATCATCACTTGTCG
TTTTTGCACCATTACCTATGCCTTCCATCTCGAAAAGGTTCCTGTTTTTC
CTCTACAAGATGCCAATGGAACTAGATTTATTAGATTGCATAACTTTACT
GTTTAAACTCCGAAAACTTAAAACGCACGAATTCTACTGAATCTGGTAAA
GTCATTGTTATACATTGTTTACTTGATTTCATATTTTTTTCTAATTAATT
CAGGACCACGTTGGTTTTTGTACGGAATTTCCAATATGCTGTGAAAATTG
TTCTGAAGGAGATATTCCAAGGTCTAAGGTATTATAATCCACACTTTTTT
TATATGAAAACAACGAGACTCAAAATCTCCAAAAAATAAGAACGATTTAA
GAACAATGATGACCCTGAAATTACCTTAGGGAAGAAATTTCTTTCTGCCA
AATTTTAGTTTATAGGTCATTCGCCAAAATGTTTTTTAATTTAGTCTTTT
TTTCCTAAAAATCCTTTTTTCCTCTTTTTTCAGCTAAAATATTGAACAAA
AATGGGTTGTTCGCGAAAATTAATTCTCGCCAAAATTAGAAATTTTATTA
AATCGCCAAAATAAATTCCGCCAAATTGCACCAAAATTTTTTTCTCGCCA
AAATTTCTTCTCTTAAGGTACTCAATTTCATACAATATAGGGGTCGAAGT
AAGAAAAATAGGGTATAACGCCTAAAATACCTCAATTACATTATATAAAT
AAACAAGATAAGAACAATGTGAGGCTCAAAGTGCCAAAAAAAACAAGAAC
AGGCTAGCCTTAGCAAAATTATACTGGTTCGTGTATCCTTTTAGCCAATA
GATTAAAACTGAGTGTTAAAGTTTTACAGCTCTCAAAGATTATTAGACTC
ACCTTTCCAAGGGTATCAAAGCGGAGTGAATTCATAGATTTAATATTTCA
TATGTTGTTTATGCATGCTTTTATAAATTAAAACTTTAATCACCTGTCTT
TGCAAGTAGTAACCGATGCGTATTCCTGCTACTGTATTTTCTAACGAAAA
CTCCTGGAAAACCGTAAATTTACTCATTATGGAACTGAATCAATGACAAC
GATTCGCTTAAGCTCATGATAAATCTTTGTCTTAAATATTACTTTTCTTT
TTCTATTCTTTTTCTAGATGGAGACTCACATATCTGAAGAGTGTACAAAA
GTACCTCACCCTTGTCAATATTCATCACTTGGGTGTGAAGCAAAGGTTGG
TAAAATATTAGTCTGCCTTAGCAATTTTATTTTTAATTCCATCATTTTTT
CGTAGAAAAAATAAACATACCCCCATATTTAGCATGCCCACTTTCGAAAA
ATGTCTCGAAATCCGTAAAAATCTTACGGGAATAAGAAAGAAGGATTTTG
CTTTAAATTTTAGCGTCGTAAGTTTTTAAAGCCTTATTTCCAGAATGATT
AAAGACATCGAACTGATTTTAAATCTAACTTTTCAGATGATAGATCTGAG
CATACCCAGTTCAGTCCAAAATAATTCAGTTGAGTGGATTAATTTTTGCG
AGGAAATATTTTCAAGAGGTCATTAAATTCTCGCGGGACTTTTTTCGCAG
AGAAAATGAAAAACTTTGCTAATTTGCATTCTTTCTACCTAATTTCTTTC
ATTTTCTAGGAATTTTGGCAAAAATTATAATCCTAAATTTTACACGAGGA
CTACACGTTTTTTTTTTAAGAAACTAGTTTTACCAAGCAGCCTCAATGTT
TCTTGAGAAATTGCCCTTTTGAGCCTTAAATGTTTCTTACATGTTTCTAA
ACTTTTTGACATAATCAGCCTCATGGAAGGCTGGATTGGAAGGTTCTTTA
AAAAAAACGAATTAAAAAATGTTATTTTTTCATTTTCAGCCTCAGCATGT
TTCTTAGATGTTTCTTAATTTTTAGGCATTCTGAGCCTCGTGTTTCTTAA
AAGTGTGTTTCTTAAAAAACAAAAAAACGTGTATATTTCGCGAACTTCTC
AAAATTTTTAGCGAGTATCAAATTTGTTGAAACATCGCGAAATACCGGGT
GTGCCACAAATAAGTTACCCTCTTTGATTTGATTTGAACAGATTTTTCAA
AGATTGTTTCGGAATCATTCAGAGGAAAGCCTAACTTAAAATTTGGTGTA
TTACTTTTTGATTTTACTTCCTATGGGCTCTTCCAGAAAAAATCCGTTCA
TGGGGGGGGCGGAGGATGACTTGTCCAGGGGTATTGAAAAAAATACCAAA
AAATTGCAATGTCCAGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGAATTGTCCAGGAGTATTGAAAAAATACCAAAAA
ATTGCAATGTCCAGGGGGTAAATTCCAATGTCCAGGGGTAATTTTTTGTG
TCCACGGGGTTGATTTGATTAAATTTAATTCAAACTAGGGGTATAACCCG
TGTCCAGGGGGTTAAAAATCAAAATGTCCAGGGGTAATTCATGAAAAAAA
TAATATATCCTTCACCCCCCATGAACGGATTTTTTCTGGAAGAGCCCATT
GGTTCAAAAGTTATTTTCAAAAACCTAAAATGTCAATTTAAAAAAATGTC
CAAAATGTGACGGAGCCCGATTTTCGGGAAAAAAAATTTTTGGCCAAATT
TGAGCCAAAAAACGGCTAAAAAACGGGTTTTTTGGACTTTGAAAAAATGG
ATCATTAATTTTTTTTGATTATTTGTATGAAAGTAGGGTACCATCATAGG
TAAAAGATGGCTCAAGCAGATTTTTTTGGCTAAAAAAAACGCATGTTTAT
CTATAAGAATCACTATTAATAAGCATACATCAATGTTCTTAGTCAAATTA
CTCATTTTTTTATGAGATAGATGTTTTTTTTGCTCACGAGGGCTTACTTT
TGAAGAATATGCGTGTTTAGACATGAAATTTTGACTGCTTGGCGTGTTTT
TATAGAAAACTGGCCAAATTCGATATTTTTTTATAAGCACATTATCAATT
ACTTAGGTATTAGCTTTTCTCGAGGTTGGCGCTTTCATTCTTTATGATTT
TTTGCACAAAGATGCATATAACTATAAACCCTCGAATGTGACGGAGCCCG
ATTTTTGAAAAAAGAATTTTTTGGGCAAATTTGGGCCAAAAAACGGCTAA
AAAACGGGTTTTTTGGACTTTGTGCTTTCAGCTCAAATAACGCACGTTTA
TCTATAAGAATCACTATTAATAAGCATACATCGATGTTCTTAGTCAAATT
ACTTAAATTTTTTTATGAGATGTTTTTTTTGCTTGCTTGAATACGAAAGA
ATATTTCAAGAGCATGAAATTTTGGTTTCTAAACGGTTTATAAGAAGCAA
ACGACTAATTTTAATAGATCGTCACTATTTGCGTTCTGAATGATTGTTTA
ATGGTCACGCTCAATTAGATATCAATTAACCAGGTAGGTCCATAAAAGTA
TCATTTGTTACATAATGGAAATACATTTCCTGATGCATAAAATCGTTTTG
TGTGTCTATTCATTACAATCAATTTAATACTCTCGTTTTTCGGCTTTTTT
GACTTTTTTTTTAATTGACATTTTAAGGTTTTTGAACATAACTTTTGAAC
CAATGAAGTAAAATTTAAAAGTAATACACCAAATTTTAAGTTAGGCTTTC
CTCTGAATGATTCAAAAACAAACTTTGAAAAATCTCTTTTTTACTGCCTA
CAATGTCAAATCAAACTTATTTGTGGCACACCCGGTATAATCCTGGTGTA
AATTAATTTATTGCTCTAGGACCGGAAAAAAACTTCATATTTGAATTATA
TTGTACCTTTTTGGTTTCAGTTTACTGCAGAAGACTCATCTAAACACACC
TCCGAAGCTTCAGAATATCATTTGAGTTTAGCAATCAATAAAATCAAAGT
TCAAAATGATGAAATCCAATCATTGAAAGTTGTCCAAGAAGACATCATGG
ATAGATTGAAAAGAATTGAAGACAACTACAAACCACCGATCGTGTCGCCT
AAAATTTTGAGTGATGAACATATTTGGAAAATATATCAATTCTCAAAAAA
GCTGGAAAAAGCTCAACGGGACATTGGTTTTTCCTTGACTAGGCGTTTTT
ATACTTCTCAAGGACATAAAATAAAGATAAAATTCTTCCCGAATGGTGAT
GATTGTTTTGATGATTATGCTGCTATTCTTTTCTCAACTGAGACAGGCAG
CTTCGATGATACCTTGAGATGGCCTATGAAAGCTAAAATCGAGTTTTGTA
CAATCAATGCAGACTGGGAATGGGAATTCAGTGGATCAATAGATACAAGG
TCAGGAGCAGGGAAAAGTTTTCACAAGCCTCCTCATTATTGTGAAGGGTA
CGGAGACCAACAATTTATGGAAATAGATTATTTTCCAACCGACTATAATG
ACTGTTTGGCTTTGAAGATAAAAGTGATATATTGAAGAGACTTGTGGTTG
TTTTTATCTATTTTTATGTTGCTCTTTCTAATACCAATCAATTATCAAGG
TGATTGGATTACAAACAAGGATGGATCGAATGTTATTATTCAGTGTGCCC
CTGAAAAAGAAGCTCGAAAGAATTTCATTATGATGATTTTTGCTGTAAAT
TTCTTGCAATAACATCAGATTTTTTCACATTGCTGGTGGAAGTCGGTCAA
TTTCATTATGATGATTTTTGCTGTAAATTTCTTACAATAACATCAGATTT
TTTCACATTGTTGGTGGAAGTCGGTCAATTTCATTATTATCTTCCAGGTG
TTATAAGAGTAGAGCGATAAATTTATCTCGTAGAACCGCGATCTTAGAAA
GTTAGCAACTAAGTAATTGGTTAGCTTCGAATTTGATAGTATCACCACGA
GTCATGGTATGGTACCACTGATGTATGTTATCTCATAGCATTTAAATGAC
TACTCAAATTATTAACGCGCATTTGTTACCATCGCGTTATTTACAACTAT
TTAACAAAATTTTCCGACATAATTTTTGAAAAGGGGTAACCTTTTGCTTT
TGCGTTAATACATTTTCGCACTCATTTTTCCCGAAACCTTCACACTACCA
ATCGGCAGTATGTTAGTGAGGCACAGGGTGCCTTAAAGGATGATGGGATG
TTAGGGAAATATGGTGAGAGACTCTCTACGTTCACTGATCGAACTGATAT
ATCACTCTCTCTCAAACCGGTGTAGCGGATTATTTTAACTCCCTTTAAAA
GATAACTCCCCCAGTCATAATAAACTTGTAAAAAACACTCCCCTAGAGTA
GAAATTATCTAGGAAATTGTAACTCCCTTAGTAAATAATGACTCCCCAAA
ACCCTTTTTCTAAAGAGGTAGGGAGTTAAATAAAACTAGTTGGATAAGAC
TCCCCTTCTCAAATGCCAAGCAGAAGAAGTCGTTGTATTGCATTGCATTA
ACCCTAACTAACCCTAACACACTGCATTCGCAAATCTTGGAAACTTTGCA
CTCGTCCTTGTCCCAAGGGACCCAAAAAAAACCAAAGAGAATCTTTAGAA
TTAAAGGTTCAATTTGGAAATTTTATAGATATCCTAATTATTTGTTACTT
TTGTACCTTTCTTTGTTGTTAATTTCCAACAATTTTTCAAAAGCTTAACT
ACATTAACTTGATCAAAATATGGTGTCCCTTTATTCGATTCACTACCATG
TGTTGCCAAGTCATCACAAATTTGCATTGTAAGATTCCGAACTTCAGACT
TAGACTGAAAATGGATCACTTCACCTTTCCCGACGTATGGTTCGTTATTG
TACATGGGGTTGTAAATCCACCATTTTATTGTATATGATTTTTCATTGAA
TCAGCCCTTTAAGCGAATCGTTGAAATGTTTTCAAATACATTGAATTAAT
ACAAAAGCTTCTTTTGTGGCTTGTCCTTACAAAACTGGTAATAGAGAACG
AAGAAACCCATCAGGAAAAATTCTGCCCTGTCAATTTTTGAATCAAGCAC
ATCTAGATGTTTACCCAAGGAACACAACGAACAAGTATACCCAATTTCAT
CCATCAGGCAACATTGAAAGTCTTCAGGCTGCCTTAGATTTTTCTAGTAT
ATGAAGTATCAAACAGACACGCATTCTTAGATTGAAGTTAGGGGGAGTCA
TTATAAACCAGGGGGAGTCTAAATTTGCTAGGAAATATTAACTCTAGGGA
GTCATAATTTACTAGTTTATAAGAACTGGGGAGTCATAATAAACTAGTGT
ATTTTAACTGGGGAGTCCTGATAAACTAGTGTATTTTAACTGGGGAGTCA
TAATAAACTAGTGTATTTTAACTGGGGAGTCACAATAATCTAGTTTATTA
TGACTGGGACTGGGGGGTTATAATTTAGGGGAGTTGAAATTAACTGTGAC
ACCGGCTGATAATCGAAGTATCGAATGATGTCAAATAAACTTGTAAAGCT
CAAAATGGAAATGTAGAACGATAAATTCGGTACATATTCTGTTTATGTAA
ATAAATAAGGAATTTAATTTTGATGTATTGTAATGACATTGTATTCGTTT
TATTTTTTCCCAGATATTTTACCAATTCATCAATAGATAATGTTAATTAT
ACCTAGGGAATTTTTCAGACGATTTTAATGTTCAAAGCTGATCTACC

Coding sequence (CDS) from alignment at sc0001386:39684..47930-

>TCONS_00035898 ID=TCONS_00035898|Name=TCONS_00035898|organism=Clytia hemisphaerica|type=CDS|length=8694bp|location=Sequence derived from alignment at sc0001386:39684..47930- (Clytia hemisphaerica)
TTTACTGCAGAAGACTCATCTAAACACACCTCCGAAGCTTCAGAATATCA
TTTGAGTTTAGCAATCAATAAAATCAAAGTTCAAAATGATGAAATCCAAT
CATTGAAAGTTGTCCAAGAAGACATCATGGATAGATTGAAAAGAATTGAA
GACAACTACAAACCACCGATCGTGTCGCCTAAAATTTTGAGTGATGAACA
TATTTGGAAAATATATCAATTCTCAAAAAAGCTGGAAAAAGCTCAACGGG
ACATTGGTTTTTCCTTGACTAGGCGTTTTTATACTTCTCAAGGACATAAA
ATAAAGATAAAATTCTTCCCGAATGGTGATGATTGTTTTGATGATTATGC
TGCTATTCTTTTCTCAACTGAGACAGGCAGCTTCGATGATACCTTGAGAT
GGCCTATGAAAGCTAAAATCGAGTTTTGTACAATCAATGCAGACTGGGAA
TGGGAATTCAGTGGATCAATAGATACAAGGTCAGGAGCAGGGAAAAGTTT
TCACAAGCCTCCTCATTATTGTGAAGGGTACGGAGACCAACAATTTATGG
AAATAGATTATTTTCCAACCGACTATAATGACTGTTTGGCTTTGAAGATA
AAAGTGATATATTGAATGGAGACTCACATATCTGAAGAGTGTACAAAAGT
ACCTCACCCTTGTCAATATTCATCACTTGGGTGTGAAGCAAAGGACCACG
TTGGTTTTTGTACGGAATTTCCAATATGCTGTGAAAATTGTTCTGAAGGA
GATATTCCAAGGTCTAAGGATCACATTAACGTAGAATGTCAATTTGTCCC
AATTAAATGCCAAAACATAGGATGTATGGACAATATTCAAAGAAGATATT
TGTCGAAACATTGTGATGAAGAGTGTCTATACAGAATCATCACTTGTCGT
TTTTGCACCATTACCTATGCCTTCCATCTCGAAAAGCTTTTTCGTGACAA
AGGAAGGCAAAGGGAAATTCTGCAGAATATAGTCTATTGCTCATATTTCG
ACGATGGATGTGGTTGGACAAAAGAATTGAACCATTTCGAATCAAAATGG
TAATCCATTATGTCCAGAAGACCGCAGTGAGATGATTATGTCAGAGAAAG
GTGGCTATGATGTGAAATTTGTTGGTGTTGAACCTCTTAATGTGACATGT
TCAATTTGTTTGTTTACATTGCGAGAACCAATGCAAGCTGAAGAATGTGG
TCACAGGTTTTGTAAAAGTTGTGTGGAAGAACTTCCAAATGGTTTACTGC
AGAAGACTCATCTAAACACACCTCCGAAGCTTCAGAATATCATTTGAGTT
TAGCAATCAATAAAATCAAAGTTCAAAATGATGAAATCCAATCATTGAAA
GTTGTCCAAGAAGACATCATGGATAGATTGAAAAGAATTGAAGACAACTA
CAAACCACCGATCGTGTCGCCTAAAATTTTGAGTGATGAACATATTTGGA
AAATATATCAATTCTCAAAAAAGCTGGAAAAAGCTCAACGGGACATTGGT
TTTTCCTTGACTAGGCGTTTTTATACTTCTCAAGGACATAAAATAAAGAT
AAAATTCTTCCCGAATGGTGATGATTGTTTTGATGATTATGCTGCTATTC
TTTTCTCAACTGAGACAGGCAGCTTCGATGATACCTTGAGATGGCCTATG
AAAGCTAAAATCGAGTTTTGTACAATCAATGCAGACTGGGAATGGGAATT
CAGTGGATCAATAGATACAAGGTCAGGAGCAGGGAAAAGTTTTCACAAGC
CTCCTCATTATTGTGAAGGGTACGGAGACCAACAATTTATGGAAATAGAT
TATTTTCCAACCGACTATAATGACTGTTTGGCTTTGAAGATAAAAGTGAT
ATATTGAATGGAGACTCACATATCTGAAGAGTGTACAAAAGTACCTCACC
CTTGTCAATATTCATCACTTGGGTGTGAAGCAAAGGACCACGTTGGTTTT
TGTACGGAATTTCCAATATGCTGTGAAAATTGTTCTGAAGGAGATATTCC
AAGGTCTAAGGATCACATTAACGTAGAATGTCAATTTGTCCCAATTAAAT
GCCAAAACATAGGATGTATGGACAATATTCAAAGAAGATATTTGTCGAAA
CATTGTGATGAAGAGTGTCTATACAGAATCATCACTTGTCGTTTTTGCAC
CATTACCTATGCCTTCCATCTCGAAAAGCTTTTTCGTGACAAAGGAAGGC
AAAGGGAAATTCTGCAGAATATAGTCTATTGCTCATATTTCGACGATGGA
TGTGGTTGGACAAAAGAATTGAACCATTTCGAATCAAAATGGTAATCCAT
TATGTCCAGAAGACCGCAGTGAGATGATTATGTCAGAGAAAGGTGGCTAT
GATGTGAAATTTGTTGGTGTTGAACCTCTTAATGTGACATGTTCAATTTG
TTTGTTTACATTGCGAGAACCAATGCAAGCTGAAGAATGTGGTCACAGGT
TTTGTAAAAGTTGTGTGGAAGAACTTCCAAATGGTTTACTGCAGAAGACT
CATCTAAACACACCTCCGAAGCTTCAGAATATCATTTGAGTTTAGCAATC
AATAAAATCAAAGTTCAAAATGATGAAATCCAATCATTGAAAGTTGTCCA
AGAAGACATCATGGATAGATTGAAAAGAATTGAAGACAACTACAAACCAC
CGATCGTGTCGCCTAAAATTTTGAGTGATGAACATATTTGGAAAATATAT
CAATTCTCAAAAAAGCTGGAAAAAGCTCAACGGGACATTGGTTTTTCCTT
GACTAGGCGTTTTTATACTTCTCAAGGACATAAAATAAAGATAAAATTCT
TCCCGAATGGTGATGATTGTTTTGATGATTATGCTGCTATTCTTTTCTCA
ACTGAGACAGGCAGCTTCGATGATACCTTGAGATGGCCTATGAAAGCTAA
AATCGAGTTTTGTACAATCAATGCAGACTGGGAATGGGAATTCAGTGGAT
CAATAGATACAAGGTCAGGAGCAGGGAAAAGTTTTCACAAGCCTCCTCAT
TATTGTGAAGGGTACGGAGACCAACAATTTATGGAAATAGATTATTTTCC
AACCGACTATAATGACTGTTTGGCTTTGAAGATAAAAGTGATATATTGAA
TGGAGACTCACATATCTGAAGAGTGTACAAAAGTACCTCACCCTTGTCAA
TATTCATCACTTGGGTGTGAAGCAAAGGACCACGTTGGTTTTTGTACGGA
ATTTCCAATATGCTGTGAAAATTGTTCTGAAGGAGATATTCCAAGGTCTA
AGGATCACATTAACGTAGAATGTCAATTTGTCCCAATTAAATGCCAAAAC
ATAGGATGTATGGACAATATTCAAAGAAGATATTTGTCGAAACATTGTGA
TGAAGAGTGTCTATACAGAATCATCACTTGTCGTTTTTGCACCATTACCT
ATGCCTTCCATCTCGAAAAGCTTTTTCGTGACAAAGGAAGGCAAAGGGAA
ATTCTGCAGAATATAGTCTATTGCTCATATTTCGACGATGGATGTGGTTG
GACAAAAGAATTGAACCATTTCGAATCAAAATGGTAATCCATTATGTCCA
GAAGACCGCAGTGAGATGATTATGTCAGAGAAAGGTGGCTATGATGTGAA
ATTTGTTGGTGTTGAACCTCTTAATGTGACATGTTCAATTTGTTTGTTTA
CATTGCGAGAACCAATGCAAGCTGAAGAATGTGGTCACAGGTTTTGTAAA
AGTTGTGTGGAAGAACTTCCAAATGGTTTACTGCAGAAGACTCATCTAAA
CACACCTCCGAAGCTTCAGAATATCATTTGAGTTTAGCAATCAATAAAAT
CAAAGTTCAAAATGATGAAATCCAATCATTGAAAGTTGTCCAAGAAGACA
TCATGGATAGATTGAAAAGAATTGAAGACAACTACAAACCACCGATCGTG
TCGCCTAAAATTTTGAGTGATGAACATATTTGGAAAATATATCAATTCTC
AAAAAAGCTGGAAAAAGCTCAACGGGACATTGGTTTTTCCTTGACTAGGC
GTTTTTATACTTCTCAAGGACATAAAATAAAGATAAAATTCTTCCCGAAT
GGTGATGATTGTTTTGATGATTATGCTGCTATTCTTTTCTCAACTGAGAC
AGGCAGCTTCGATGATACCTTGAGATGGCCTATGAAAGCTAAAATCGAGT
TTTGTACAATCAATGCAGACTGGGAATGGGAATTCAGTGGATCAATAGAT
ACAAGGTCAGGAGCAGGGAAAAGTTTTCACAAGCCTCCTCATTATTGTGA
AGGGTACGGAGACCAACAATTTATGGAAATAGATTATTTTCCAACCGACT
ATAATGACTGTTTGGCTTTGAAGATAAAAGTGATATATTGAATGGAGACT
CACATATCTGAAGAGTGTACAAAAGTACCTCACCCTTGTCAATATTCATC
ACTTGGGTGTGAAGCAAAGGACCACGTTGGTTTTTGTACGGAATTTCCAA
TATGCTGTGAAAATTGTTCTGAAGGAGATATTCCAAGGTCTAAGGATCAC
ATTAACGTAGAATGTCAATTTGTCCCAATTAAATGCCAAAACATAGGATG
TATGGACAATATTCAAAGAAGATATTTGTCGAAACATTGTGATGAAGAGT
GTCTATACAGAATCATCACTTGTCGTTTTTGCACCATTACCTATGCCTTC
CATCTCGAAAAGCTTTTTCGTGACAAAGGAAGGCAAAGGGAAATTCTGCA
GAATATAGTCTATTGCTCATATTTCGACGATGGATGTGGTTGGACAAAAG
AATTGAACCATTTCGAATCAAAATGGTAATCCATTATGTCCAGAAGACCG
CAGTGAGATGATTATGTCAGAGAAAGGTGGCTATGATGTGAAATTTGTTG
GTGTTGAACCTCTTAATGTGACATGTTCAATTTGTTTGTTTACATTGCGA
GAACCAATGCAAGCTGAAGAATGTGGTCACAGGTTTTGTAAAAGTTGTGT
GGAAGAACTTCCAAATGGTTTACTGCAGAAGACTCATCTAAACACACCTC
CGAAGCTTCAGAATATCATTTGAGTTTAGCAATCAATAAAATCAAAGTTC
AAAATGATGAAATCCAATCATTGAAAGTTGTCCAAGAAGACATCATGGAT
AGATTGAAAAGAATTGAAGACAACTACAAACCACCGATCGTGTCGCCTAA
AATTTTGAGTGATGAACATATTTGGAAAATATATCAATTCTCAAAAAAGC
TGGAAAAAGCTCAACGGGACATTGGTTTTTCCTTGACTAGGCGTTTTTAT
ACTTCTCAAGGACATAAAATAAAGATAAAATTCTTCCCGAATGGTGATGA
TTGTTTTGATGATTATGCTGCTATTCTTTTCTCAACTGAGACAGGCAGCT
TCGATGATACCTTGAGATGGCCTATGAAAGCTAAAATCGAGTTTTGTACA
ATCAATGCAGACTGGGAATGGGAATTCAGTGGATCAATAGATACAAGGTC
AGGAGCAGGGAAAAGTTTTCACAAGCCTCCTCATTATTGTGAAGGGTACG
GAGACCAACAATTTATGGAAATAGATTATTTTCCAACCGACTATAATGAC
TGTTTGGCTTTGAAGATAAAAGTGATATATTGAATGGAGACTCACATATC
TGAAGAGTGTACAAAAGTACCTCACCCTTGTCAATATTCATCACTTGGGT
GTGAAGCAAAGGACCACGTTGGTTTTTGTACGGAATTTCCAATATGCTGT
GAAAATTGTTCTGAAGGAGATATTCCAAGGTCTAAGGATCACATTAACGT
AGAATGTCAATTTGTCCCAATTAAATGCCAAAACATAGGATGTATGGACA
ATATTCAAAGAAGATATTTGTCGAAACATTGTGATGAAGAGTGTCTATAC
AGAATCATCACTTGTCGTTTTTGCACCATTACCTATGCCTTCCATCTCGA
AAAGCTTTTTCGTGACAAAGGAAGGCAAAGGGAAATTCTGCAGAATATAG
TCTATTGCTCATATTTCGACGATGGATGTGGTTGGACAAAAGAATTGAAC
CATTTCGAATCAAAATGGTAATCCATTATGTCCAGAAGACCGCAGTGAGA
TGATTATGTCAGAGAAAGGTGGCTATGATGTGAAATTTGTTGGTGTTGAA
CCTCTTAATGTGACATGTTCAATTTGTTTGTTTACATTGCGAGAACCAAT
GCAAGCTGAAGAATGTGGTCACAGGTTTTGTAAAAGTTGTGTGGAAGAAC
TTCCAAATGGTTTACTGCAGAAGACTCATCTAAACACACCTCCGAAGCTT
CAGAATATCATTTGAGTTTAGCAATCAATAAAATCAAAGTTCAAAATGAT
GAAATCCAATCATTGAAAGTTGTCCAAGAAGACATCATGGATAGATTGAA
AAGAATTGAAGACAACTACAAACCACCGATCGTGTCGCCTAAAATTTTGA
GTGATGAACATATTTGGAAAATATATCAATTCTCAAAAAAGCTGGAAAAA
GCTCAACGGGACATTGGTTTTTCCTTGACTAGGCGTTTTTATACTTCTCA
AGGACATAAAATAAAGATAAAATTCTTCCCGAATGGTGATGATTGTTTTG
ATGATTATGCTGCTATTCTTTTCTCAACTGAGACAGGCAGCTTCGATGAT
ACCTTGAGATGGCCTATGAAAGCTAAAATCGAGTTTTGTACAATCAATGC
AGACTGGGAATGGGAATTCAGTGGATCAATAGATACAAGGTCAGGAGCAG
GGAAAAGTTTTCACAAGCCTCCTCATTATTGTGAAGGGTACGGAGACCAA
CAATTTATGGAAATAGATTATTTTCCAACCGACTATAATGACTGTTTGGC
TTTGAAGATAAAAGTGATATATTGAATGGAGACTCACATATCTGAAGAGT
GTACAAAAGTACCTCACCCTTGTCAATATTCATCACTTGGGTGTGAAGCA
AAGGACCACGTTGGTTTTTGTACGGAATTTCCAATATGCTGTGAAAATTG
TTCTGAAGGAGATATTCCAAGGTCTAAGGATCACATTAACGTAGAATGTC
AATTTGTCCCAATTAAATGCCAAAACATAGGATGTATGGACAATATTCAA
AGAAGATATTTGTCGAAACATTGTGATGAAGAGTGTCTATACAGAATCAT
CACTTGTCGTTTTTGCACCATTACCTATGCCTTCCATCTCGAAAAGCTTT
TTCGTGACAAAGGAAGGCAAAGGGAAATTCTGCAGAATATAGTCTATTGC
TCATATTTCGACGATGGATGTGGTTGGACAAAAGAATTGAACCATTTCGA
ATCAAAATGGTAATCCATTATGTCCAGAAGACCGCAGTGAGATGATTATG
TCAGAGAAAGGTGGCTATGATGTGAAATTTGTTGGTGTTGAACCTCTTAA
TGTGACATGTTCAATTTGTTTGTTTACATTGCGAGAACCAATGCAAGCTG
AAGAATGTGGTCACAGGTTTTGTAAAAGTTGTGTGGAAGAACTTCCAAAT
GGTTTACTGCAGAAGACTCATCTAAACACACCTCCGAAGCTTCAGAATAT
CATTTGAGTTTAGCAATCAATAAAATCAAAGTTCAAAATGATGAAATCCA
ATCATTGAAAGTTGTCCAAGAAGACATCATGGATAGATTGAAAAGAATTG
AAGACAACTACAAACCACCGATCGTGTCGCCTAAAATTTTGAGTGATGAA
CATATTTGGAAAATATATCAATTCTCAAAAAAGCTGGAAAAAGCTCAACG
GGACATTGGTTTTTCCTTGACTAGGCGTTTTTATACTTCTCAAGGACATA
AAATAAAGATAAAATTCTTCCCGAATGGTGATGATTGTTTTGATGATTAT
GCTGCTATTCTTTTCTCAACTGAGACAGGCAGCTTCGATGATACCTTGAG
ATGGCCTATGAAAGCTAAAATCGAGTTTTGTACAATCAATGCAGACTGGG
AATGGGAATTCAGTGGATCAATAGATACAAGGTCAGGAGCAGGGAAAAGT
TTTCACAAGCCTCCTCATTATTGTGAAGGGTACGGAGACCAACAATTTAT
GGAAATAGATTATTTTCCAACCGACTATAATGACTGTTTGGCTTTGAAGA
TAAAAGTGATATATTGAATGGAGACTCACATATCTGAAGAGTGTACAAAA
GTACCTCACCCTTGTCAATATTCATCACTTGGGTGTGAAGCAAAGGACCA
CGTTGGTTTTTGTACGGAATTTCCAATATGCTGTGAAAATTGTTCTGAAG
GAGATATTCCAAGGTCTAAGGATCACATTAACGTAGAATGTCAATTTGTC
CCAATTAAATGCCAAAACATAGGATGTATGGACAATATTCAAAGAAGATA
TTTGTCGAAACATTGTGATGAAGAGTGTCTATACAGAATCATCACTTGTC
GTTTTTGCACCATTACCTATGCCTTCCATCTCGAAAAGCTTTTTCGTGAC
AAAGGAAGGCAAAGGGAAATTCTGCAGAATATAGTCTATTGCTCATATTT
CGACGATGGATGTGGTTGGACAAAAGAATTGAACCATTTCGAATCAAAAT
GGTAATCCATTATGTCCAGAAGACCGCAGTGAGATGATTATGTCAGAGAA
AGGTGGCTATGATGTGAAATTTGTTGGTGTTGAACCTCTTAATGTGACAT
GTTCAATTTGTTTGTTTACATTGCGAGAACCAATGCAAGCTGAAGAATGT
GGTCACAGGTTTTGTAAAAGTTGTGTGGAAGAACTTCCAAATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021078XLOC_021078Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035898-proteinTCONS_00035898-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035898-exon-sc0001386-1575043694:47640..47930TCONS_00035898-exon-sc0001386-1575043694:47640..47930Clytia hemisphaericaexon
TCONS_00035898-exon-sc0001386-1575043694:46855..46900TCONS_00035898-exon-sc0001386-1575043694:46855..46900Clytia hemisphaericaexon
TCONS_00035898-exon-sc0001386-1575043694:46550..46654TCONS_00035898-exon-sc0001386-1575043694:46550..46654Clytia hemisphaericaexon
TCONS_00035898-exon-sc0001386-1575043694:46194..46361TCONS_00035898-exon-sc0001386-1575043694:46194..46361Clytia hemisphaericaexon
TCONS_00035898-exon-sc0001386-1575043694:45953..46027TCONS_00035898-exon-sc0001386-1575043694:45953..46027Clytia hemisphaericaexon
TCONS_00035898-exon-sc0001386-1575043694:45036..45113TCONS_00035898-exon-sc0001386-1575043694:45036..45113Clytia hemisphaericaexon
TCONS_00035898-exon-sc0001386-1575043694:39684..42460TCONS_00035898-exon-sc0001386-1575043694:39684..42460Clytia hemisphaericaexon
TCONS_00035898-exon-sc0001386-1510915933:47640..47930TCONS_00035898-exon-sc0001386-1510915933:47640..47930Clytia hemisphaericaexon
TCONS_00035898-exon-sc0001386-1510915933:46855..46900TCONS_00035898-exon-sc0001386-1510915933:46855..46900Clytia hemisphaericaexon
TCONS_00035898-exon-sc0001386-1510915933:46550..46654TCONS_00035898-exon-sc0001386-1510915933:46550..46654Clytia hemisphaericaexon
TCONS_00035898-exon-sc0001386-1510915933:46194..46361TCONS_00035898-exon-sc0001386-1510915933:46194..46361Clytia hemisphaericaexon
TCONS_00035898-exon-sc0001386-1510915933:45953..46027TCONS_00035898-exon-sc0001386-1510915933:45953..46027Clytia hemisphaericaexon
TCONS_00035898-exon-sc0001386-1510915933:45036..45113TCONS_00035898-exon-sc0001386-1510915933:45036..45113Clytia hemisphaericaexon
TCONS_00035898-exon-sc0001386-1510915933:39684..42460TCONS_00035898-exon-sc0001386-1510915933:39684..42460Clytia hemisphaericaexon
TCONS_00035898-exon-sc0001386-1491911889:47640..47930TCONS_00035898-exon-sc0001386-1491911889:47640..47930Clytia hemisphaericaexon
TCONS_00035898-exon-sc0001386-1491911889:46855..46900TCONS_00035898-exon-sc0001386-1491911889:46855..46900Clytia hemisphaericaexon
TCONS_00035898-exon-sc0001386-1491911889:46550..46654TCONS_00035898-exon-sc0001386-1491911889:46550..46654Clytia hemisphaericaexon
TCONS_00035898-exon-sc0001386-1491911889:46194..46361TCONS_00035898-exon-sc0001386-1491911889:46194..46361Clytia hemisphaericaexon
TCONS_00035898-exon-sc0001386-1491911889:45953..46027TCONS_00035898-exon-sc0001386-1491911889:45953..46027Clytia hemisphaericaexon
TCONS_00035898-exon-sc0001386-1491911889:45036..45113TCONS_00035898-exon-sc0001386-1491911889:45036..45113Clytia hemisphaericaexon
TCONS_00035898-exon-sc0001386-1491911889:39684..42460TCONS_00035898-exon-sc0001386-1491911889:39684..42460Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001386supercontigsc0001386:39684..47930 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.95519	2.01012	1.2519	0.97744	3.21997	2.58895	6.60362	6.74272	6.33158	5.28957	6.23325	5.35863	7.01818	6.57633	10.9386	12.0663	7.98901	8.54773	8.67159	8.89948	7.71532	7.21903	7.02228	7.97464	8.48868	9.03334	8.08611	8.18671	4.35025	3.75568
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR001293Znf_TRAF
IPR008974TRAF-like
IPR013083Znf_RING/FYVE/PHD
IPR018957Znf_C3HC4_RING-type
IPR017907Znf_RING_CS
IPR002083MATH/TRAF_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO:0046872metal ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Blast
[Close]
BLAST of TCONS_00035898 vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.760e-31
Identity = 114/444 (25.68%), Postives = 192/444 (43.24%), Query Frame = 2 
Query:  137 MSEKGGYDVKFVGVEPLNVTCSICLFTLREPMQAEECGHRFCKSCVEELPNGQNGNPLCPEDRSEMI---LFRDKGRQREILQNIVYCSYFDDGCGWTKELNHFEDHINVECQFVPIKCQNIGCMDNIQRRYLSKHCDEECLYRIITCRFCTITYAFHLEKDHVGFCTEFPICCENCSEGDIPRSKMETHISEECTKVPHPCQYSSLGCEAKFTAEDSSKHTSEASEYHLSL---AINKIKVQND-----EIQSLKVVQEDIMDRLKRIEDNYKPPIV--------------SPKILSDE------------HIWKIYQFSKKLEKAQRDIGFSL-TRRFYTSQ-GHKIKIKF---FPNGDDCFDDYAAILFSTETGSFDDTLRWPMKAKIEFCTIN---ADWEWEFSGSIDTRSGAGKSFHKP--PHYCEGYGDQQFMEIDYF 1327
            M E  GYDV+F         C ICL  LRE +Q   CGHRFCK+C+  + + ++    CP D   ++   LF D   +REIL  +V C   ++GC    EL H EDH    C+F  + C    C    Q+ +++ H  ++C  R ++C  C  + AF  ++ H   C    + CE C+   I R +M  H   +C   P PC +S+ GC  K      ++H  E ++ H+ +   A++ + V  D     E+++ +     +  RL R +   +                  + + L D+            +IWKI  F   L+  + +    + +  FYT + G+K+ ++     P    C  +Y ++   T  G +D  L WP +  I    ++   A         +D +     +F +P  P   +G+G   FM ++  
Sbjct:   50 MEEIQGYDVEFDPPLESKYECPICLMALREAVQTP-CGHRFCKACI--IKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCP--NEGCLHKMELRHLEDH-QAHCEFALMDCPQ--CQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVICEYCNTILI-REQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQAVHSLSVIPDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELKRTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRC-ANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPEL-LAFQRPTIPRNPKGFGYVTFMHLEAL 482
The following BLAST results are available for this feature:
BLAST of TCONS_00035898 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF62.760e-3125.68TNF receptor-associated factor 6 OS=Homo sapiens G... [more]
back to top