TCONS_00035898-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00035898-protein
Unique NameTCONS_00035898-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length413

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00035898-protein ID=TCONS_00035898-protein|Name=TCONS_00035898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=413bp
MSEKGGYDVKFVGVEPLNVTCSICLFTLREPMQAEECGHRFCKSCVEELP
NGQNGNPLCPEDRSEMILFRDKGRQREILQNIVYCSYFDDGCGWTKELNH
FEDHINVECQFVPIKCQNIGCMDNIQRRYLSKHCDEECLYRIITCRFCTI
TYAFHLEKDHVGFCTEFPICCENCSEGDIPRSKMETHISEECTKVPHPCQ
YSSLGCEAKFTAEDSSKHTSEASEYHLSLAINKIKVQNDEIQSLKVVQED
IMDRLKRIEDNYKPPIVSPKILSDEHIWKIYQFSKKLEKAQRDIGFSLTR
RFYTSQGHKIKIKFFPNGDDCFDDYAAILFSTETGSFDDTLRWPMKAKIE
FCTINADWEWEFSGSIDTRSGAGKSFHKPPHYCEGYGDQQFMEIDYFPTD
YNDCLALKIKVIY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_021078XLOC_021078Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00035898TCONS_00035898Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR001293Znf_TRAF
IPR008974TRAF-like
IPR013083Znf_RING/FYVE/PHD
IPR018957Znf_C3HC4_RING-type
IPR017907Znf_RING_CS
IPR002083MATH/TRAF_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO:0046872metal ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 21..62
e-value: 1.1E-5
score: 34.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 21..63
score: 12.12
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 20..59
e-value: 9.30825E-6
score: 41.6624
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 104..151
e-value: 5.4E-6
score: 26.9
coord: 160..218
e-value: 2.1E-10
score: 41.0
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 160..213
score: 11.769
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 104..149
score: 11.531
IPR008974TRAF-likeGENE3D2.60.210.10coord: 251..412
e-value: 7.2E-14
score: 51.5
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 83..148
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 275..411
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 10..80
e-value: 1.0E-9
score: 37.2
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 149..174
e-value: 0.1
score: 12.3
coord: 175..219
e-value: 2.2E-6
score: 27.3
coord: 124..148
e-value: 8.8E-5
score: 22.1
coord: 81..123
e-value: 1.7E-11
score: 43.6
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 21..60
e-value: 9.4E-8
score: 31.7
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 37..46
IPR002083MATH/TRAF domainPROSITEPS50144MATHcoord: 273..411
score: 11.518
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 18..66

Blast
[Close]
BLAST of TCONS_00035898-protein vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 6.089e-33
Identity = 114/444 (25.68%), Postives = 192/444 (43.24%), Query Frame = 0 
Query:    1 MSEKGGYDVKFVGVEPLNVTCSICLFTLREPMQAEECGHRFCKSCVEELPNGQNGNPLCPEDRSEMI---LFRDKGRQREILQNIVYCSYFDDGCGWTKELNHFEDHINVECQFVPIKCQNIGCMDNIQRRYLSKHCDEECLYRIITCRFCTITYAFHLEKDHVGFCTEFPICCENCSEGDIPRSKMETHISEECTKVPHPCQYSSLGCEAKFTAEDSSKHTSEASEYHLSL---AINKIKVQND-----EIQSLKVVQEDIMDRLKRIEDNYKPPIV--------------SPKILSDE------------HIWKIYQFSKKLEKAQRDIGFSL-TRRFYTSQ-GHKIKIKF---FPNGDDCFDDYAAILFSTETGSFDDTLRWPMKAKIEFCTIN---ADWEWEFSGSIDTRSGAGKSFHKP--PHYCEGYGDQQFMEIDYF 397
            M E  GYDV+F         C ICL  LRE +Q   CGHRFCK+C+  + + ++    CP D   ++   LF D   +REIL  +V C   ++GC    EL H EDH    C+F  + C    C    Q+ +++ H  ++C  R ++C  C  + AF  ++ H   C    + CE C+   I R +M  H   +C   P PC +S+ GC  K      ++H  E ++ H+ +   A++ + V  D     E+++ +     +  RL R +   +                  + + L D+            +IWKI  F   L+  + +    + +  FYT + G+K+ ++     P    C  +Y ++   T  G +D  L WP +  I    ++   A         +D +     +F +P  P   +G+G   FM ++  
Sbjct:   50 MEEIQGYDVEFDPPLESKYECPICLMALREAVQTP-CGHRFCKACI--IKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCP--NEGCLHKMELRHLEDH-QAHCEFALMDCPQ--CQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVICEYCNTILI-REQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQAVHSLSVIPDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELKRTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRC-ANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPEL-LAFQRPTIPRNPKGFGYVTFMHLEAL 482
The following BLAST results are available for this feature:
BLAST of TCONS_00035898-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF66.089e-3325.68TNF receptor-associated factor 6 OS=Homo sapiens G... [more]
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