TCONS_00035889 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035889
Unique NameTCONS_00035889
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length885

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035889 ID=TCONS_00035889|Name=TCONS_00035889|organism=Clytia hemisphaerica|type=transcript|length=885bp
ccactctttgttgtttgtagttctgacaggagaaaacattttattttttc
atactatatatatgaGTCGCCTACCTTGATAATGCCAACTGCTCCTTAGT
CCCCccatgtatatatttttttctcttttgtctttttagCTAAACTCCCC
TGAGTTCTACAACCCTTTATATCTTGTGTGAAAAATCCTACTCTGCACTC
TTTCTTCCTGCATCTCTAATCTCAAAATCTTATGCCTGTGAAATATCCCT
GCAACTTTTGTCAAAGAGCAGTTGCCAAAAACCACAAAGGAATCCAATGT
GACATTTGTGACCACTGGGTCCACATCAAATGCAACAACACCACCAATGG
TGAGTATCTTTACCTTCAAAACAATAATGATGTCAGCTGGTGCTGCCAGA
AATGCACTTTGTCAAGTATACCCTTCTCGACAACGTCCAGAGACTCCATC
GGGCTGCTGAACCAAGGTATGAGATCACTTTTTATCGAAAACTTTAATCC
AAACAGTAACCCCAATGTGGAGTTCTTCAGAGACATTAAAGAACGCCTCA
GTGAGGAATTTGTTGAAGATGACATTGATACCGATCCTTCTGAGTGTCCC
TATAGCTCCATCTCTGatctcaacaaaaaatatcactcAAATAAAAGTAC
CAATTTCAGTGTCCTGCATCTTAATATAAATTCTCTGAAACTTCATCATT
CTGAGCTTGATATCTTACTCAAAAACTGTAATATCAAATTTGATGTAATT
GGCATATCTGAAACTGGCCTTAACAACACTAATAATAACAAAAACACCAA
TCTTGAGGGTTACCATAATCCTGAAGATACATTTTCTTCACGTTCCAAAG
GAGGTACAAGGCTTAATGTCTCTGAAGATCTCAAC
Run BLAST on NCBI

protein sequence of TCONS_00035889-protein

>TCONS_00035889-protein ID=TCONS_00035889-protein|Name=TCONS_00035889-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
MPVKYPCNFCQRAVAKNHKGIQCDICDHWVHIKCNNTTNGEYLYLQNNND
VSWCCQKCTLSSIPFSTTSRDSIGLLNQGMRSLFIENFNPNSNPNVEFFR
DIKERLSEEFVEDDIDTDPSECPYSSISDLNKKYHSNKSTNFSVLHLNIN
SLKLHHSELDILLKNCNIKFDVIGISETGLNNTNNNKNTNLEGYHNPEDT
FSSRSKGGTRLNVSEDLN
Run BLAST on NCBI

transcript from alignment at sc0001385:10015..10899

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035889 ID=TCONS_00035889|Name=TCONS_00035889|organism=Clytia hemisphaerica|type=transcript|length=885bp|location=Sequence derived from alignment at sc0001385:10015..10899 (Clytia hemisphaerica)
GTTGAGATCTTCAGAGACATTAAGCCTTGTACCTCCTTTGGAACGTGAAG
AAAATGTATCTTCAGGATTATGGTAACCCTCAAGATTGGTGTTTTTGTTA
TTATTAGTGTTGTTAAGGCCAGTTTCAGATATGCCAATTACATCAAATTT
GATATTACAGTTTTTGAGTAAGATATCAAGCTCAGAATGATGAAGTTTCA
GAGAATTTATATTAAGATGCAGGACACTGAAATTGGTACTTTTATTTgag
tgatattttttgttgagatCAGAGATGGAGCTATAGGGACACTCAGAAGG
ATCGGTATCAATGTCATCTTCAACAAATTCCTCACTGAGGCGTTCTTTAA
TGTCTCTGAAGAACTCCACATTGGGGTTACTGTTTGGATTAAAGTTTTCG
ATAAAAAGTGATCTCATACCTTGGTTCAGCAGCCCGATGGAGTCTCTGGA
CGTTGTCGAGAAGGGTATACTTGACAAAGTGCATTTCTGGCAGCACCAGC
TGACATCATTATTGTTTTGAAGGTAAAGATACTCACCATTGGTGGTGTTG
TTGCATTTGATGTGGACCCAGTGGTCACAAATGTCACATTGGATTCCTTT
GTGGTTTTTGGCAACTGCTCTTTGACAAAAGTTGCAGGGATATTTCACAG
GCATAAGATTTTGAGATTAGAGATGCAGGAAGAAAGAGTGCAGAGTAGGA
TTTTTCACACAAGATATAAAGGGTTGTAGAACTCAGGGGAGTTTAGctaa
aaagacaaaagagaaaaaaatatatacatggGGGGACTAAGGAGCAGTTG
GCATTATCAAGGTAGGCGACtcatatatatagtatgaaaaaataaaatgt
tttctcctgtcagaactacaaacaacaaagagtgg

Coding sequence (CDS) from alignment at sc0001385:10015..10899

>TCONS_00035889 ID=TCONS_00035889|Name=TCONS_00035889|organism=Clytia hemisphaerica|type=CDS|length=654bp|location=Sequence derived from alignment at sc0001385:10015..10899 (Clytia hemisphaerica)
GTTGAGATCTTCAGAGACATTAAGCCTTGTACCTCCTTTGGAACGTGAAG
AAAATGTATCTTCAGGATTATGGTAACCCTCAAGATTGGTGTTTTTGTTA
TTATTAGTGTTGTTAAGGCCAGTTTCAGATATGCCAATTACATCAAATTT
GATATTACAGTTTTTGAGTAAGATATCAAGCTCAGAATGATGAAGTTTCA
GAGAATTTATATTAAGATGCAGGACACTGAAATTGGTACTTTTATTTgag
tgatattttttgttgagatCAGAGATGGAGCTATAGGGACACTCAGAAGG
ATCGGTATCAATGTCATCTTCAACAAATTCCTCACTGAGGCGTTCTTTAA
TGTCTCTGAAGAACTCCACATTGGGGTTACTGTTTGGATTAAAGTTTTCG
ATAAAAAGTGATCTCATACCTTGGTTCAGCAGCCCGATGGAGTCTCTGGA
CGTTGTCGAGAAGGGTATACTTGACAAAGTGCATTTCTGGCAGCACCAGC
TGACATCATTATTGTTTTGAAGGTAAAGATACTCACCATTGGTGGTGTTG
TTGCATTTGATGTGGACCCAGTGGTCACAAATGTCACATTGGATTCCTTT
GTGGTTTTTGGCAACTGCTCTTTGACAAAAGTTGCAGGGATATTTCACAG
GCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021077XLOC_021077Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035889-exon-sc0001385-1491911889:10015..10899TCONS_00035889-exon-sc0001385-1491911889:10015..10899Clytia hemisphaericaexon
TCONS_00035889-exon-sc0001385-1510915933:10015..10899TCONS_00035889-exon-sc0001385-1510915933:10015..10899Clytia hemisphaericaexon
TCONS_00035889-exon-sc0001385-1575043694:10015..10899TCONS_00035889-exon-sc0001385-1575043694:10015..10899Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035889-proteinTCONS_00035889-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001385supercontigsc0001385:10015..10899 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.105713	0	0	0.368965	0.218188	0.289879	0	0.0646662	0.0442255	0.0554714	0	0	0.141174	0.182235	0.0894028	0.0322878	0	0	0.0587024	0.0583796	0.103065	0	0.0608125	0.0560662	0.286409	0.317155	0	0	0	0.0593483
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR019786Zinc_finger_PHD-type_CS
IPR011011Znf_FYVE_PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035889 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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