TCONS_00035886 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035886
Unique NameTCONS_00035886
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1819

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035886 ID=TCONS_00035886|Name=TCONS_00035886|organism=Clytia hemisphaerica|type=transcript|length=1819bp
CAGGTTTCAAAGTCTGGAAAGAAGCTTCGTGGTCGTGGAATTATGAGATA
TCGAACTCCAACGCCAGAAAGGGAAGAAGAACCAGAAAAAGAAGAAGGTC
GGAGATTCCATAACAGCGTAAACCGTTCGCGTCGCTCTCGTTCAAGGGAC
CGAACAAGACGTCGCTCACCGCGCGGTGCAAGATATTCAAGATCTCCCat
aagaagaagaaaatattcaatttcacCTATTCGTAAACCCTCAACCTCCA
CTGTGAAAACGACAGATAAAGCTGAACCTTGCGAGGGAAAAGTTGTAAAA
GTCATGAAGGAAAAGAAGGACGACAAAACTGATGTGCCCAAAGAAGACGG
ACAACCTGTAAAATCTCAAGATGAGAAAGTATCACCTTCCGCTAAAATAA
AGTCTTCTCGTAGCAAGTCGCGCGATCGAAGTAGGCGATCTCATTCCCGC
GAAAGAAAAAGATCACGATCGCGTGATCGTAGAAGAAGATCACGGTCAAG
GTCGAGAGGGCGTTATCGAAGATCTGGGTCACGCTCTCGCTGTCACAGGA
GAAGATCGCGGTCGCGAGACAGGTACCGTCGTAGTCGAAGTCGATCGAAG
CGTCGCTCACCAAGGCGCTCATCACGAGACCGTGCAGGAAAATTCGAACG
CCATCGAGATAAGAGTAGTTCAGACGAATCGATCGAAAGGAAAACGAACG
AATCGAAAGTGGCCGACCAAAAGCCATCTTACAAAGAGAGGATCAACATG
ctattggaaaagaaaaatgcagAAGCACGTTTGGCCGAAGAACAAGGCAC
TATTGCTTCAAAAGAACAAGAAGCATCTGAGTCCAATCGTGTTGCTTACT
CACCACGTGAAAACGAGGCAGATGAAAACTTTGCAACAGGGATATTAGGC
CAACCAGAACTGTACGACGATCTGATACCGAAAGACAGCTGTGCCAATGT
CAAAGAAAGTGTTCAAGAGGAAGAGGAAGTAGATTTTTATGCAGAGTTGG
ACAAGCCCTTCGTCGATGGTCAACANACAGCTGTGCCAATGTCAAAGAAA
GTGTTCAAGAGGAAGAGGAAGTAGATTTTTATGCAGAGTTGGACAAGCCC
TTCGTCGATGGTCAACAGAACAAACCATCGGAAAAAGAAAGATCACTTCT
AGTGGTGGAAGAAGAGAAATCCGCCTATGCAGAGGCGGCTGCTGAAGAGG
CGGCTGAACAACGTATCAAACTTCTGCAACAAGAAATTGATGACCACAAA
CGCGCCAAGTTGGACACCGCTCACATCCATTCTGAAAACACATCTAGAAA
AATTCGGAAGAAAAAGTCCAGTAGAGTGGATAATGAGATGGATAGCGAAG
ACGAGGCTGCTCATAACAGGAAAGCCTCtaggaagaagaaaaataagagA
CGCAAACGCCAGCTTTCCGAACAGTTAGTACTGAGTGATGAAATGAGTGG
TTCCGAGGATGGGTCGCAATCGGTTGATAGTTTGACAGAAGCCGACCGAG
ATGGAAAGTCtcataaaaagaagaaatttctgACTGCAACAAATGGCCgt
aagaaaaagaaatcacGCAAAGACCGACCACTCTCTGACAGTGATGATGC
TGGTGCCCACAGTGAACAAGATGAGCTGCCTTTGCCGCCGAGCAAAAACC
GTAAGAAACATCGCAAGGAAGCTCATTCCGATCAATGCCATAGCGAAAGT
CAGTCGGACGAAGCTcctgtcaaaaagaaaaaatcgaaaagcaaaaagcg
cgggaaaatatGAATCTCTAAACAAAGgTTGCTTAAATGATATAAATATG
ATGAAGAAATTTGATCAAG
Run BLAST on NCBI

protein sequence of TCONS_00035886-protein

>TCONS_00035886-protein ID=TCONS_00035886-protein|Name=TCONS_00035886-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp
QVSKSGKKLRGRGIMRYRTPTPEREEEPEKEEGRRFHNSVNRSRRSRSRD
RTRRRSPRGARYSRSPIRRRKYSISPIRKPSTSTVKTTDKAEPCEGKVVK
VMKEKKDDKTDVPKEDGQPVKSQDEKVSPSAKIKSSRSKSRDRSRRSHSR
ERKRSRSRDRRRRSRSRSRGRYRRSGSRSRCHRRRSRSRDRYRRSRSRSK
RRSPRRSSRDRAGKFERHRDKSSSDESIERKTNESKVADQKPSYKERINM
LLEKKNAEARLAEEQGTIASKEQEASESNRVAYSPRENEADENFATGILG
QPELYDDLIPKDSCANVKESVQEEEEVDFYAELDKPFVDGQXTAVPMSKK
VFKRKRK
Run BLAST on NCBI

transcript from alignment at sc0001385:52126..58047+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035886 ID=TCONS_00035886|Name=TCONS_00035886|organism=Clytia hemisphaerica|type=transcript|length=5922bp|location=Sequence derived from alignment at sc0001385:52126..58047+ (Clytia hemisphaerica)
CAGGTTTCAAAGTCTGGAAAGAAGCTTCGTGGTCGTGGAATTATGGTAAC
ATATCTTCCCTTTGTCTTTCGACAAAGTCTGCTCATCCTAAAAAGCTAAT
TCTAATttagtaaaacttttttttaccaattttgaCAAAGCATATGTATT
CAAAGATCACTGGAAATCATTAGGTAAGTCTAAACGATCTTCAAACATTC
TATTCTTAGAGATATCGAACTCCAACGCCAGAAAGGGAAGAAGAACCAGA
AAAAGAAGAAGGTCGGAGATTCCATAACAGCGTAAACCGTTCGCGTCGCT
CTCGTTCAAGGGACCGAACAAGACGTCGCTCACCGCGCGGTGCAAGATAT
TCAAGATCTCCCataagaagaagaaaatattcaatttcacCTATTCGTAA
ACCCTCAACCTCCACTGTGAAAACGACAGATAAAGCTGAACCTTGCGAGG
GAAAAGTTGTAAAAGTCATGAAGGAAAAGAAGGACGACAAAACTGATGTG
CCCAAAGAAGACGGACAACCTGTAAAATCTCAAGATGAGAAAGTATCACC
TTCCGCTAAAATAAAGTCTTCTCGTAGCAAGTCGCGCGATCGAAGTAGGC
GATCTCATTCCCGCGAAAGAAAAAGATCACGATCGCGTGATCGTAGAAGA
AGATCACGGTCAAGGTCGAGAGGGCGTTATCGAAGATCTGGGTCACGCTC
TCGCTGTCACAGGAGAAGATCGCGGTCGCGAGACAGGTACCGTCGTAGTC
GAAGTCGATCGAAGCGTCGCTCACCAAGGCGCTCATCACGAGACCGTGCA
GGAAAATTCGAACGCCATCGAGATAAGAGTAGTTCAGACGAATCGATCGA
AAGGAAAACGAACGAATCGAAAGTGGCCGACCAAAAGCCATCTTACAAAG
AGAGGATCAACATGctattggaaaagaaaaatgcagAAGCACGTTTGGCC
GAAGAACAAGGCACTATTGCTTCAAAAGAACAAGAAGCATCTGAGTCCAA
TCGTGTTGCTTACTCACCACGTGAAAACGAGGCAGATGAAAACTTTGCAA
CAGGGATATTAGGCCAACCAGAACTGTACGACGATCTGATACCGAAAGAC
AGCTGTGCCAATGTCAAAGAAAGTGTTCAAGAGGAAGAGGAAGTAGATTT
TTATGCAGAGTTGGACAAGCCCTTCGTCGATGGTCAACANACAGCTGTGC
CAATGTCAAAGAAAGTGTTCAAGAGGAAGAGGAAGTAGATTTTTATGCAG
AGTTGGACAAGCCCTTCGTCGATGGTCAACAGAACAAACCATCGGAAAAA
GAAAGATCACTTCTAGTGGTGGAAGAAGAGAAATCCGCCTATGCAGAGGC
GGCTGCTGAAGAGGCGGCTGAACAACGTATCAAACTTCTGCAACAAGAAA
TTGATGACCACAAACGCGCCAAGTTGGACACCGCTCACATCCATTCTGAA
AACACATCTAGAAAAATTCGGAAGAAAAAGTCCAGTAGAGTGGATAATGA
GATGGATAGCGAAGACGAGGCTGCTCATAACAGGAAAGCCTCtaggaaga
agaaaaataagagACGCAAACGCCAGCTTTCCGAACAGTTAGTACTGAGT
GATGAAATGAGTGGTTCCGAGGATGGGTCGCAATCGGTTGATAGTTTGAC
AGAAGCCGACCGAGATGGAAAGTCtcataaaaagaagaaatttctgACTG
CAACAAATGGCCgtaagaaaaagaaatcacGCAAAGACCGACCACTCTCT
GACAGTGATGATGCTGGTGCCCACAGTGAACAAGATGAGCTGCCTTTGCC
GCCGAGCAAAAACCGTAAGAAACATCGCAAGGAAGCTCATTCCGATCAAT
GCCATAGCGAAAGTCAGTCGGACGAAGCTcctgtcaaaaagaaaaaatcg
aaaagcaaaaagcgcgggaaaatatGAATCTCTAAACAAAGGTCGGTGTA
AATATTGGAGTCTTCTTCCTTCCATAGAAGAAAGTTACGTACCATTTTTC
ATTCAACAGGGAGCTTTCCAAGTGTTGGACTTTTTCACCGTAATATTTTG
TTGATAATAAAGCAACATTTCTTAtctagaatttttttaatttttaaaac
atttttttgaaacaagTTTTAGGTTTTATATTGTGCTCTCTTGTGCTCTT
TGTGTGCCTTTTGATTTCGATAACGATTTCGAGATCTTTTTTTCGCTTTA
GATCTGTTTAGATCTCTAATATTACACTTATTNNNNNNNNNNNNNNNNNN
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NNNNGACTTTTCGCCCAAAGGAAAGTCTACCATGTTTGTTATGGTTTTTC
TGTTTTCCCACGtgacttttgttttgattttgtatgttttgttttgactt
gaaaGCGCGACAATGTTTACATCACAACTCCCgcaatgtccctttaaaat
ctagaaaattttccaagcttggcccgtaaaacaacaaattaaatttgact
CGCCTTAGAACAGAGAAACGCCACTAAACTGTAATTTAAACCAGTGATAT
CTATTATATTAAAGAAGCGTACTGCCAAGGTCGATGAAAACTTCAAATAC
TAGCTAGTTATTGCTTTTACTTGACAAATGGACTCAGATTAAACAAAAAA
CATCCTGCCGGTCTcaaatttcagccattttgacaTAATGGTATGCAACT
GTTTCCGATCAATCAGGATCAATCAGTTTTGCAACTCATCTTCCCATAGC
ATAGCAATACCTTTCACTGTACTTGTCATTCTTGAAACGAACAGGAGGCA
TTTTTAGTTCCCTCGGTATGCTCAGAAGATTAACAATGAACCAAACAACC
AATCAGTTTTGAAActctttgaaaatttatcatgTTTCTTTCCTTTCTTA
CAACCTTAAAACTAAGGAAATACTATGGACTGTAACTTCTGgaccggtta
gtgtaaaacacaggtcacaggtcacaacaaagtgcagaccggaaaaaaag
ataataagattataacatatacataacataacatattaattatacaaaat
gtgatgttgatagtgtgaatggatatataaaaacggcaccaatcagaagc
ttgttaggtccctaagagagtggatgaaactaattaatcattcgattgtt
attttaatgacttatgacaatttttgacaaaaatattgacagaatcacaa
aatatcatgtcttacaagagaaaaacaccaaaaatatttagcataccgaa
tgtgatgataacaatatggctggatataaaattacaccaatcagaagctc
gtgagttctctgagcaggtagttttagagcgatgtgttttattatatgta
accatcatataacattacaaacattacaatatgtaatatacctgttatac
gtataatattgtttcaaatattttctggtctgcgttctacacggcgcaaa
ctgcgaaagatcgataaaagcacatggttaaattttgatgtttggaatgg
ttttatatggatgaaattgcttgagaattatgtttttgataattctttgt
gttttccaaacattttcctctgcaatgacattgattagagtcaacctgtc
atcactgacctgtgacctgtgacctgtgttttacactaaccgcttCTGGA
CTATCTAAAATTTTATGGGATTATTTTATTAAcactatttgaaaaatctt
caatatgttttagtttttaattttttataggTTGCTTAAATGATATAAAT
ATGATGAAGAAATTTGATCAAG

Coding sequence (CDS) from alignment at sc0001385:52126..58047+

>TCONS_00035886 ID=TCONS_00035886|Name=TCONS_00035886|organism=Clytia hemisphaerica|type=CDS|length=2148bp|location=Sequence derived from alignment at sc0001385:52126..58047+ (Clytia hemisphaerica)
CAGGTTTCAAAGTCTGGAAAGAAGCTTCGTGGTCGTGGAATTATGAGATA
TCGAACTCCAACGCCAGAAAGGGAAGAAGAACCAGAAAAAGAAGAAGGTC
GGAGATTCCATAACAGCGTAAACCGTTCGCGTCGCTCTCGTTCAAGGGAC
CGAACAAGACGTCGCTCACCGCGCGGTGCAAGATATTCAAGATCTCCCat
aagaagaagaaaatattcaatttcacCTATTCGTAAACCCTCAACCTCCA
CTGTGAAAACGACAGATAAAGCTGAACCTTGCGAGGGAAAAGTTGTAAAA
GTCATGAAGGAAAAGAAGGACGACAAAACTGATGTGCCCAAAGAAGACGG
ACAACCTGTAAAATCTCAAGATGAGAAAGTATCACCTTCCGCTAAAATAA
AGTCTTCTCGTAGCAAGTCGCGCGATCGAAGTAGGCGATCTCATTCCCGC
GAAAGAAAAAGATCACGATCGCGTGATCGTAGAAGAAGATCACGGTCAAG
GTCGAGAGGGCGTTATCGAAGATCTGGGTCACGCTCTCGCTGTCACAGGA
GAAGATCGCGGTCGCGAGACAGGTACCGTCGTAGTCGAAGTCGATCGAAG
CGTCGCTCACCAAGGCGCTCATCACGAGACCGTGCAGGAAAATTCGAACG
CCATCGAGATAAGAGTAGTTCAGACGAATCGATCGAAAGGAAAACGAACG
AATCGAAAGTGGCCGACCAAAAGCCATCTTACAAAGAGAGGATCAACATG
ctattggaaaagaaaaatgcagAAGCACGTTTGGCCGAAGAACAAGGCAC
TATTGCTTCAAAAGAACAAGAAGCATCTGAGTCCAATCGTGTTGCTTACT
CACCACGTGAAAACGAGGCAGATGAAAACTTTGCAACAGGGATATTAGGC
CAACCAGAACTGTACGACGATCTGATACCGAAAGACAGCTGTGCCAATGT
CAAAGAAAGTGTTCAAGAGGAAGAGGAAGTAGATTTTTATGCAGAGTTGG
ACAAGCCCTTCGTCGATGGTCAACANACAGCTGTGCCAATGTCAAAGAAA
GTGTTCAAGAGGAAGAGGAAGTAGCAGGTTTCAAAGTCTGGAAAGAAGCT
TCGTGGTCGTGGAATTATGAGATATCGAACTCCAACGCCAGAAAGGGAAG
AAGAACCAGAAAAAGAAGAAGGTCGGAGATTCCATAACAGCGTAAACCGT
TCGCGTCGCTCTCGTTCAAGGGACCGAACAAGACGTCGCTCACCGCGCGG
TGCAAGATATTCAAGATCTCCCataagaagaagaaaatattcaatttcac
CTATTCGTAAACCCTCAACCTCCACTGTGAAAACGACAGATAAAGCTGAA
CCTTGCGAGGGAAAAGTTGTAAAAGTCATGAAGGAAAAGAAGGACGACAA
AACTGATGTGCCCAAAGAAGACGGACAACCTGTAAAATCTCAAGATGAGA
AAGTATCACCTTCCGCTAAAATAAAGTCTTCTCGTAGCAAGTCGCGCGAT
CGAAGTAGGCGATCTCATTCCCGCGAAAGAAAAAGATCACGATCGCGTGA
TCGTAGAAGAAGATCACGGTCAAGGTCGAGAGGGCGTTATCGAAGATCTG
GGTCACGCTCTCGCTGTCACAGGAGAAGATCGCGGTCGCGAGACAGGTAC
CGTCGTAGTCGAAGTCGATCGAAGCGTCGCTCACCAAGGCGCTCATCACG
AGACCGTGCAGGAAAATTCGAACGCCATCGAGATAAGAGTAGTTCAGACG
AATCGATCGAAAGGAAAACGAACGAATCGAAAGTGGCCGACCAAAAGCCA
TCTTACAAAGAGAGGATCAACATGctattggaaaagaaaaatgcagAAGC
ACGTTTGGCCGAAGAACAAGGCACTATTGCTTCAAAAGAACAAGAAGCAT
CTGAGTCCAATCGTGTTGCTTACTCACCACGTGAAAACGAGGCAGATGAA
AACTTTGCAACAGGGATATTAGGCCAACCAGAACTGTACGACGATCTGAT
ACCGAAAGACAGCTGTGCCAATGTCAAAGAAAGTGTTCAAGAGGAAGAGG
AAGTAGATTTTTATGCAGAGTTGGACAAGCCCTTCGTCGATGGTCAACAN
ACAGCTGTGCCAATGTCAAAGAAAGTGTTCAAGAGGAAGAGGAAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021074XLOC_021074Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035886-proteinTCONS_00035886-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035886-exon-sc0001385-1491911889:52126..52170TCONS_00035886-exon-sc0001385-1491911889:52126..52170Clytia hemisphaericaexon
TCONS_00035886-exon-sc0001385-1510915933:52126..52170TCONS_00035886-exon-sc0001385-1510915933:52126..52170Clytia hemisphaericaexon
TCONS_00035886-exon-sc0001385-1575043694:52126..52170TCONS_00035886-exon-sc0001385-1575043694:52126..52170Clytia hemisphaericaexon
TCONS_00035886-exon-sc0001385-1491911889:52335..54066TCONS_00035886-exon-sc0001385-1491911889:52335..54066Clytia hemisphaericaexon
TCONS_00035886-exon-sc0001385-1510915933:52335..54066TCONS_00035886-exon-sc0001385-1510915933:52335..54066Clytia hemisphaericaexon
TCONS_00035886-exon-sc0001385-1575043694:52335..54066TCONS_00035886-exon-sc0001385-1575043694:52335..54066Clytia hemisphaericaexon
TCONS_00035886-exon-sc0001385-1491911889:58006..58047TCONS_00035886-exon-sc0001385-1491911889:58006..58047Clytia hemisphaericaexon
TCONS_00035886-exon-sc0001385-1510915933:58006..58047TCONS_00035886-exon-sc0001385-1510915933:58006..58047Clytia hemisphaericaexon
TCONS_00035886-exon-sc0001385-1575043694:58006..58047TCONS_00035886-exon-sc0001385-1575043694:58006..58047Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001385supercontigsc0001385:52126..58047 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.83572	2.09863	5.37043e-09	2.16118	6.00332	12.8279	7.63542	10.5505	8.70613	10.4128	1.61001	5.77948	8.83197	23.953	9.47519	9.67989	10.175	9.87025	1.87669	4.23661	5.84944	4.11525	3.59717	5.59802	6.97555	6.21378	5.51152	1.15736	3.9476	5.25053
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035886 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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