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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035842 ID=TCONS_00035842|Name=TCONS_00035842|organism=Clytia hemisphaerica|type=transcript|length=303bp
CTCTGACATTTTCAGACGCTGTTGTTTCATTGATTGTTGCTGTTTACAGA
TTTATTGATATACAATCGTTATTTTTCGTGATTATTCATCCTTTTACTGT
GTTGTTTGCTGCTTGCTCATTTGTAAAACAAgagCTTGAAAACCAACTGC
GTGGACAACTCCTGATCAGTTGTCATCTCTGTCTTACCCATCATTATGAC
TGATTTATTCAGATTTCAAGACCAAAGGGTTACTAAACCCCTACTGAAGG
GTTAAACCCTTCAACCAACCTACCTCAGATTACTTGGCATCACCAGATTA
CCT Run BLAST on NCBI transcript from alignment at sc0001376:60209..62837- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035842 ID=TCONS_00035842|Name=TCONS_00035842|organism=Clytia hemisphaerica|type=transcript|length=2629bp|location=Sequence derived from alignment at sc0001376:60209..62837- (Clytia hemisphaerica)
CTCTGACATTTTCAGACGCTGTTGTTTCATTGATTGTTGCTGTTTACAGA
TTTATTGATATACAATCGTTATTTTTCGTGATTATTCATCCTTTTACTGT
GTTGTTTGCTGCTTGCTCATTTGTAAAACAAGAGGTATGTATTTTTTTTT
GGAATATAAATTTTTCAGATCGAGTAGGCCACAAAACGTCTAATCCTGAC
CACCCCTTTCTAATCCCGACCTACCTCTAAAACAAACAATTTTTCCAAAT
TTAGATGGTATTTTAGTAGATTAGTTCTTCTTCATACTATTCAATTAAAG
TTTTTAAAGTAAAGACAGTATTTTCTGTAAATTAGTATTAGAGGTAGGTC
AGGATTAGAAAGGGGTGGTCAGGATTAGATAATCTGACAATATCAGATTC
AAGATTTTTCTGCTATAAAATGATTCGCTATTGGTAATCCAGTACTTTCG
AAAAAGCATTTTACCTCGGAAAACTTGTGTCGTCCACCGCCTTATAACAG
ACTTAAACTGGAGCAGCCCAATGCCCGTTTCCAGACAATGTCAATCGAAC
GCAGTTGAATGATGCAATTAATTCGATTGTCGAATACAATTTAATCGCAA
TCAAATATTACCCAGGATTTATTGCCGTTCAATTATGAGATATAATTGAA
TCAATTGGATATTAATTTTAGGTGCGCGCTTTTTAAATAGGGGACGACGC
TTAATAGAAGGGCAGTGCTTGATAGAGGGAATTCTGTGGTCGCGGCCTTG
TCTGATCAAATGCAATCGAACATCATTGTCCATGAATCGAACGAATCAAA
CGTAATTGACAGTCAATCAAACCAATCATTAACGCATGTCCCTGGCAACC
CCCAGAAATTTCCAGGGCGATATGGGGGTAGACATTAATTGCCCGGTTTT
CCTCTTGCTTTTTCTTCCGCTCTACCCCGAAAACGAGCATGACAAAGGAG
AGAACGGCCACAACCATTGCCTAGTAAAATTTTGGACAGTCAATTTGGCT
GTGTTTGAATACATAGACCTTTTTTCAAAGAGGCCACCCTGTTGAATAAT
TATGTAGTCCAGCAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAGGCCACCC
TGTTGAATAATTATGTAGTCCAGCAGAAAAACAATGATAAAACCATGCAT
AATTATTACAATATGCACGATACAGTAATTATGCATGGCTTTATCATTGT
TTTTGGGGTCTTTGACGAAAGATTTTCGAATTTCTTATCGGCATTTGGCC
GATTAGGGGAGGGGGAGCAGTTTCAACTACATGCCGATAAAAAAGCAAGT
ATTGTGACGAAAATCTTTTTAGCCAATTTCTTTCTGATTTCGTCCACAAA
CTTCACTGAAAGCATACAATTTCACTTGCTTTCACCTTTGCGCACAAATT
TGCAACTTTAAAAGTACAGTTTTGAATTAGCTTTGATAAAAAAACTCTTT
TTTCATTGGCCAGCACACTGCCTTTTCTTACAAAATGTTGGGAATTCATT
GCGTCTTTTTTTAAACTTTTGGAACTAATTTTCACGGTTTTTCTCAAAAA
TTATTATTGTAATTTTTATGTGTTACACCAGGATCAACTGTGAAAATTTT
AGAATTGAACTAACCGCAAAAACTTTAATTCCCGCAAAATGCAATTTTTC
TGATTTTTTCACGGATCGTGAAAATTAGTTCCCTTTAGGTACATAGAATA
AACAACATAGCAGAAATATTATTAGAACAACCTTTCATCTACTTCAAAAT
GGTTATAAAATTGGTAAATTTTCAAATTCTTTGATGTTAAATTAATATTT
CTTCTTTTCAGCTTGAAAACCAACTGCGTGGACAACTCCTGATCAGTTGT
CATCTCTGTCTTACCCATCATTATGACTGATTTATTCAGGTTGGTACTTA
CTGAGATAGAGGGGGAATCGAAAGCATAGGTCTAACTTGACATCACTTTT
CATTGCTTGCAGCAGGAATATGTAATAGCGAAGCTGGATGATGAACAAGA
ACTTCTTAGGAAACTCCATCTTTGTCTTTTCTATTGTTAACTGTTCATAA
TAGAAACCATCTCTGAACCCTTTAAGTGTTCTATTTGTATAAGAAAAAAA
GGCCAGGAAAACTTTTCATACAGTAATTCTGCTCAGATTTTAACTGTTTT
CATGGAAAAAAGTTCCCAGTAAGTAAATAGACAAGAGCTTTCTCGTAAAC
GAAATTTATTTTTATCAGCATGTGCCATGAATTTGACTGGCTTTTTGTGA
TTTTTCTTGAATAACTTTGCATGTAAATATTTTCTTTGACTAATTAATTT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACAGATTTCAAGACCA
AAGGGTTACTAAACCCCTACTGAAGGGTTAAACCCTTCAACCAACCTACC
TCAGATTACTTGGCATCACCAGATTACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035842-exon-sc0001376-1575043694:62704..62837 | TCONS_00035842-exon-sc0001376-1575043694:62704..62837 | Clytia hemisphaerica | exon |
| TCONS_00035842-exon-sc0001376-1575043694:60899..60976 | TCONS_00035842-exon-sc0001376-1575043694:60899..60976 | Clytia hemisphaerica | exon |
| TCONS_00035842-exon-sc0001376-1575043694:60209..60299 | TCONS_00035842-exon-sc0001376-1575043694:60209..60299 | Clytia hemisphaerica | exon |
| TCONS_00035842-exon-sc0001376-1510915933:62704..62837 | TCONS_00035842-exon-sc0001376-1510915933:62704..62837 | Clytia hemisphaerica | exon |
| TCONS_00035842-exon-sc0001376-1510915933:60899..60976 | TCONS_00035842-exon-sc0001376-1510915933:60899..60976 | Clytia hemisphaerica | exon |
| TCONS_00035842-exon-sc0001376-1510915933:60209..60299 | TCONS_00035842-exon-sc0001376-1510915933:60209..60299 | Clytia hemisphaerica | exon |
| TCONS_00035842-exon-sc0001376-1491911889:62704..62837 | TCONS_00035842-exon-sc0001376-1491911889:62704..62837 | Clytia hemisphaerica | exon |
| TCONS_00035842-exon-sc0001376-1491911889:60899..60976 | TCONS_00035842-exon-sc0001376-1491911889:60899..60976 | Clytia hemisphaerica | exon |
| TCONS_00035842-exon-sc0001376-1491911889:60209..60299 | TCONS_00035842-exon-sc0001376-1491911889:60209..60299 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001376 | supercontig | sc0001376:60209..62837 - |
Blast
The following BLAST results are available for this feature:
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