TCONS_00035842 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035842
Unique NameTCONS_00035842
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length303

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035842 ID=TCONS_00035842|Name=TCONS_00035842|organism=Clytia hemisphaerica|type=transcript|length=303bp
CTCTGACATTTTCAGACGCTGTTGTTTCATTGATTGTTGCTGTTTACAGA
TTTATTGATATACAATCGTTATTTTTCGTGATTATTCATCCTTTTACTGT
GTTGTTTGCTGCTTGCTCATTTGTAAAACAAgagCTTGAAAACCAACTGC
GTGGACAACTCCTGATCAGTTGTCATCTCTGTCTTACCCATCATTATGAC
TGATTTATTCAGATTTCAAGACCAAAGGGTTACTAAACCCCTACTGAAGG
GTTAAACCCTTCAACCAACCTACCTCAGATTACTTGGCATCACCAGATTA
CCT
Run BLAST on NCBI

transcript from alignment at sc0001376:60209..62837-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035842 ID=TCONS_00035842|Name=TCONS_00035842|organism=Clytia hemisphaerica|type=transcript|length=2629bp|location=Sequence derived from alignment at sc0001376:60209..62837- (Clytia hemisphaerica)
CTCTGACATTTTCAGACGCTGTTGTTTCATTGATTGTTGCTGTTTACAGA
TTTATTGATATACAATCGTTATTTTTCGTGATTATTCATCCTTTTACTGT
GTTGTTTGCTGCTTGCTCATTTGTAAAACAAGAGGTATGTATTTTTTTTT
GGAATATAAATTTTTCAGATCGAGTAGGCCACAAAACGTCTAATCCTGAC
CACCCCTTTCTAATCCCGACCTACCTCTAAAACAAACAATTTTTCCAAAT
TTAGATGGTATTTTAGTAGATTAGTTCTTCTTCATACTATTCAATTAAAG
TTTTTAAAGTAAAGACAGTATTTTCTGTAAATTAGTATTAGAGGTAGGTC
AGGATTAGAAAGGGGTGGTCAGGATTAGATAATCTGACAATATCAGATTC
AAGATTTTTCTGCTATAAAATGATTCGCTATTGGTAATCCAGTACTTTCG
AAAAAGCATTTTACCTCGGAAAACTTGTGTCGTCCACCGCCTTATAACAG
ACTTAAACTGGAGCAGCCCAATGCCCGTTTCCAGACAATGTCAATCGAAC
GCAGTTGAATGATGCAATTAATTCGATTGTCGAATACAATTTAATCGCAA
TCAAATATTACCCAGGATTTATTGCCGTTCAATTATGAGATATAATTGAA
TCAATTGGATATTAATTTTAGGTGCGCGCTTTTTAAATAGGGGACGACGC
TTAATAGAAGGGCAGTGCTTGATAGAGGGAATTCTGTGGTCGCGGCCTTG
TCTGATCAAATGCAATCGAACATCATTGTCCATGAATCGAACGAATCAAA
CGTAATTGACAGTCAATCAAACCAATCATTAACGCATGTCCCTGGCAACC
CCCAGAAATTTCCAGGGCGATATGGGGGTAGACATTAATTGCCCGGTTTT
CCTCTTGCTTTTTCTTCCGCTCTACCCCGAAAACGAGCATGACAAAGGAG
AGAACGGCCACAACCATTGCCTAGTAAAATTTTGGACAGTCAATTTGGCT
GTGTTTGAATACATAGACCTTTTTTCAAAGAGGCCACCCTGTTGAATAAT
TATGTAGTCCAGCAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAGGCCACCC
TGTTGAATAATTATGTAGTCCAGCAGAAAAACAATGATAAAACCATGCAT
AATTATTACAATATGCACGATACAGTAATTATGCATGGCTTTATCATTGT
TTTTGGGGTCTTTGACGAAAGATTTTCGAATTTCTTATCGGCATTTGGCC
GATTAGGGGAGGGGGAGCAGTTTCAACTACATGCCGATAAAAAAGCAAGT
ATTGTGACGAAAATCTTTTTAGCCAATTTCTTTCTGATTTCGTCCACAAA
CTTCACTGAAAGCATACAATTTCACTTGCTTTCACCTTTGCGCACAAATT
TGCAACTTTAAAAGTACAGTTTTGAATTAGCTTTGATAAAAAAACTCTTT
TTTCATTGGCCAGCACACTGCCTTTTCTTACAAAATGTTGGGAATTCATT
GCGTCTTTTTTTAAACTTTTGGAACTAATTTTCACGGTTTTTCTCAAAAA
TTATTATTGTAATTTTTATGTGTTACACCAGGATCAACTGTGAAAATTTT
AGAATTGAACTAACCGCAAAAACTTTAATTCCCGCAAAATGCAATTTTTC
TGATTTTTTCACGGATCGTGAAAATTAGTTCCCTTTAGGTACATAGAATA
AACAACATAGCAGAAATATTATTAGAACAACCTTTCATCTACTTCAAAAT
GGTTATAAAATTGGTAAATTTTCAAATTCTTTGATGTTAAATTAATATTT
CTTCTTTTCAGCTTGAAAACCAACTGCGTGGACAACTCCTGATCAGTTGT
CATCTCTGTCTTACCCATCATTATGACTGATTTATTCAGGTTGGTACTTA
CTGAGATAGAGGGGGAATCGAAAGCATAGGTCTAACTTGACATCACTTTT
CATTGCTTGCAGCAGGAATATGTAATAGCGAAGCTGGATGATGAACAAGA
ACTTCTTAGGAAACTCCATCTTTGTCTTTTCTATTGTTAACTGTTCATAA
TAGAAACCATCTCTGAACCCTTTAAGTGTTCTATTTGTATAAGAAAAAAA
GGCCAGGAAAACTTTTCATACAGTAATTCTGCTCAGATTTTAACTGTTTT
CATGGAAAAAAGTTCCCAGTAAGTAAATAGACAAGAGCTTTCTCGTAAAC
GAAATTTATTTTTATCAGCATGTGCCATGAATTTGACTGGCTTTTTGTGA
TTTTTCTTGAATAACTTTGCATGTAAATATTTTCTTTGACTAATTAATTT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACAGATTTCAAGACCA
AAGGGTTACTAAACCCCTACTGAAGGGTTAAACCCTTCAACCAACCTACC
TCAGATTACTTGGCATCACCAGATTACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021046XLOC_021046Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035842-exon-sc0001376-1575043694:62704..62837TCONS_00035842-exon-sc0001376-1575043694:62704..62837Clytia hemisphaericaexon
TCONS_00035842-exon-sc0001376-1575043694:60899..60976TCONS_00035842-exon-sc0001376-1575043694:60899..60976Clytia hemisphaericaexon
TCONS_00035842-exon-sc0001376-1575043694:60209..60299TCONS_00035842-exon-sc0001376-1575043694:60209..60299Clytia hemisphaericaexon
TCONS_00035842-exon-sc0001376-1510915933:62704..62837TCONS_00035842-exon-sc0001376-1510915933:62704..62837Clytia hemisphaericaexon
TCONS_00035842-exon-sc0001376-1510915933:60899..60976TCONS_00035842-exon-sc0001376-1510915933:60899..60976Clytia hemisphaericaexon
TCONS_00035842-exon-sc0001376-1510915933:60209..60299TCONS_00035842-exon-sc0001376-1510915933:60209..60299Clytia hemisphaericaexon
TCONS_00035842-exon-sc0001376-1491911889:62704..62837TCONS_00035842-exon-sc0001376-1491911889:62704..62837Clytia hemisphaericaexon
TCONS_00035842-exon-sc0001376-1491911889:60899..60976TCONS_00035842-exon-sc0001376-1491911889:60899..60976Clytia hemisphaericaexon
TCONS_00035842-exon-sc0001376-1491911889:60209..60299TCONS_00035842-exon-sc0001376-1491911889:60209..60299Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001376supercontigsc0001376:60209..62837 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.12981	5.30592	3.19505	3.28375	29.753	16.3248	15.397	15.8838	13.8852	13.8345	13.969	13.891	11.8909	11.8586	15.2654	13.569	27.5414	23.1506	24.7426	23.5664	34.1508	30.0753	13.0117	14.9322	4.85785	8.22378	33.1425	21.5534	27.0965	32.5298
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035842 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top