TCONS_00035836 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035836
Unique NameTCONS_00035836
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length438

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035836 ID=TCONS_00035836|Name=TCONS_00035836|organism=Clytia hemisphaerica|type=transcript|length=438bp
TTGAAAAGTTCCGTGAATTATTCAAAGAAACTACAGAATGTTTTCACTCC
AAGAATTTTCCAAATGCGACAACAATCTATAGCAACAGTTCAGCAAATAT
CAGTGGTTCTGTGTGTCACCGATGTAAACCTCTTTACAATGTGCTTCAAT
CAGAATTCAAATATCAGGCAGATAGTGACGAAGAAACAGTGACACAATGG
TGTGCTGATATCAATGTCTCAGTCAATGAAACGAGGCATGTGTGGAGCTT
CAGATATCATTGTGGAAAGAGGGATAAAGATATGGTGTCCATCATAGCCA
TGACTTGTTTCTTCTGCTTTCTGCCCATCGTCTTTTACGTGGGAGCTAAG
CTACATGCTGACGTCAAAGAACGAAAGTcgaGCCGTTACTACGAATCACA
ATAAAAGATGAAGGAGCCACAGAGTTGGTAAAACGGGA
Run BLAST on NCBI

protein sequence of TCONS_00035836-protein

>TCONS_00035836-protein ID=TCONS_00035836-protein|Name=TCONS_00035836-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
EKFRELFKETTECFHSKNFPNATTIYSNSSANISGSVCHRCKPLYNVLQS
EFKYQADSDEETVTQWCADINVSVNETRHVWSFRYHCGKRDKDMVSIIAM
TCFFCFLPIVFYVGAKLHADVKERKSSRYYESQ
Run BLAST on NCBI

transcript from alignment at sc0001373:64069..65219-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035836 ID=TCONS_00035836|Name=TCONS_00035836|organism=Clytia hemisphaerica|type=transcript|length=1151bp|location=Sequence derived from alignment at sc0001373:64069..65219- (Clytia hemisphaerica)
TTGAAAAGTTCCGTGAATTATTCAAAGAAACTACAGAATGTTTTCACTCC
AAGGTAAAATTTCGGTTTTGGAAATACTGATAGTCTGCCTTCTGTAGTTG
TCAGTTCTTGAAACATGTCTAATTTACCATTTTAGTTTGATGTCCTCCAG
AAATATTTATGTCTTAATTAACATTAGCCCTCACGTCACAGGAAGTATTG
ATAAAATGTAGTTACAAAACACTTTAAATCTTTGTTCTATTTCAGAATTT
TCCAAATGCGACAACAATCTATAGCAACAGTTCAGCAAATATCAGTGGTT
CTGTGTGTCACCGATGTAAACCTCTTTACAATGTGCTTCAATCAGAATTC
AAATATCAGGCAGATAGTGACGAAGAAACAGTGACACAATGGTGTGCTGA
TATCAATGTCTCAGTAAGTTTTATACTGTAATGTTATTAATGAAAATCGA
TGTAAAGTAATCTTGTACCGTACTTACTAACTAACCAATGATTCTGCTAA
CTAAGTCCGCTCCAACAATCAAAGTTTTCTGAGCACAATTAATTCATAAT
TTTTAATTTTTAATTTAAACCAATCAGATACGTTGTTGAGCAGACTATTT
ATTGGATAGTTCAAACACGAATATAAACTGCCAAATAATTCATCAATTGC
TTCCTTAAACTTCAGGTCAATGAAACGAGGCATGTGTGGAGCTTCAGATA
TCATTGTGGAAAGAGGGATAAAGATATGGTGTCCATCATAGCCATGACTT
GTTTCTTCTGCTTTCTGCCCATCGTCTTTTACGTGGGAGCTAAGCTACAT
GCTGACGTCAAAGAACGAAAGTGTAAGATAACAGAGTGCTACTTTGATTT
TAAGTGTAATCAGATGGATTTCATTTGTGTTTTGGAAACAAATAAATAAA
TAGATCAAATGGTCAAAGTCTTTCATAATTATTGTATTCTTCTAATAATA
ATTCTTATTCTTCCGTTGCTTTGTCAGCATTTCTTAGTTTACTTCAATGG
ACTCTGTGTCATTAAAAAACCTCTAACCATCATATTTTTAATCAAAATTT
GATTAAAAGTAGATAAATCAATTGTTTTATTTTTTTTTCAGCGAGCCGTT
ACTACGAATCACAATAAAAGATGAAGGAGCCACAGAGTTGGTAAAACGGG
A

Coding sequence (CDS) from alignment at sc0001373:64069..65219-

>TCONS_00035836 ID=TCONS_00035836|Name=TCONS_00035836|organism=Clytia hemisphaerica|type=CDS|length=1608bp|location=Sequence derived from alignment at sc0001373:64069..65219- (Clytia hemisphaerica)
CGAGCCGTTACTACGAATCACAATAAGTCAATGAAACGAGGCATGTGTGG
AGCTTCAGATATCATTGTGGAAAGAGGGATAAAGATATGGTGTCCATCAT
AGCCATGACTTGTTTCTTCTGCTTTCTGCCCATCGTCTTTTACGTGGGAG
CTAAGCTACATGCTGACGTCAAAGAACGAAAGTAATTTTCCAAATGCGAC
AACAATCTATAGCAACAGTTCAGCAAATATCAGTGGTTCTGTGTGTCACC
GATGTAAACCTCTTTACAATGTGCTTCAATCAGAATTCAAATATCAGGCA
GATAGTGACGAAGAAACAGTGACACAATGGTGTGCTGATATCAATGTCTC
AGAAAAGTTCCGTGAATTATTCAAAGAAACTACAGAATGTTTTCACTCCA
AGCGAGCCGTTACTACGAATCACAATAAGTCAATGAAACGAGGCATGTGT
GGAGCTTCAGATATCATTGTGGAAAGAGGGATAAAGATATGGTGTCCATC
ATAGCCATGACTTGTTTCTTCTGCTTTCTGCCCATCGTCTTTTACGTGGG
AGCTAAGCTACATGCTGACGTCAAAGAACGAAAGTAATTTTCCAAATGCG
ACAACAATCTATAGCAACAGTTCAGCAAATATCAGTGGTTCTGTGTGTCA
CCGATGTAAACCTCTTTACAATGTGCTTCAATCAGAATTCAAATATCAGG
CAGATAGTGACGAAGAAACAGTGACACAATGGTGTGCTGATATCAATGTC
TCAGAAAAGTTCCGTGAATTATTCAAAGAAACTACAGAATGTTTTCACTC
CAAGCGAGCCGTTACTACGAATCACAATAAGTCAATGAAACGAGGCATGT
GTGGAGCTTCAGATATCATTGTGGAAAGAGGGATAAAGATATGGTGTCCA
TCATAGCCATGACTTGTTTCTTCTGCTTTCTGCCCATCGTCTTTTACGTG
GGAGCTAAGCTACATGCTGACGTCAAAGAACGAAAGTAATTTTCCAAATG
CGACAACAATCTATAGCAACAGTTCAGCAAATATCAGTGGTTCTGTGTGT
CACCGATGTAAACCTCTTTACAATGTGCTTCAATCAGAATTCAAATATCA
GGCAGATAGTGACGAAGAAACAGTGACACAATGGTGTGCTGATATCAATG
TCTCAGAAAAGTTCCGTGAATTATTCAAAGAAACTACAGAATGTTTTCAC
TCCAAGCGAGCCGTTACTACGAATCACAATAAGTCAATGAAACGAGGCAT
GTGTGGAGCTTCAGATATCATTGTGGAAAGAGGGATAAAGATATGGTGTC
CATCATAGCCATGACTTGTTTCTTCTGCTTTCTGCCCATCGTCTTTTACG
TGGGAGCTAAGCTACATGCTGACGTCAAAGAACGAAAGTAATTTTCCAAA
TGCGACAACAATCTATAGCAACAGTTCAGCAAATATCAGTGGTTCTGTGT
GTCACCGATGTAAACCTCTTTACAATGTGCTTCAATCAGAATTCAAATAT
CAGGCAGATAGTGACGAAGAAACAGTGACACAATGGTGTGCTGATATCAA
TGTCTCAGAAAAGTTCCGTGAATTATTCAAAGAAACTACAGAATGTTTTC
ACTCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021041XLOC_021041Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035836-exon-sc0001373-1575043694:65167..65219TCONS_00035836-exon-sc0001373-1575043694:65167..65219Clytia hemisphaericaexon
TCONS_00035836-exon-sc0001373-1575043694:64807..64974TCONS_00035836-exon-sc0001373-1575043694:64807..64974Clytia hemisphaericaexon
TCONS_00035836-exon-sc0001373-1575043694:64398..64554TCONS_00035836-exon-sc0001373-1575043694:64398..64554Clytia hemisphaericaexon
TCONS_00035836-exon-sc0001373-1575043694:64069..64128TCONS_00035836-exon-sc0001373-1575043694:64069..64128Clytia hemisphaericaexon
TCONS_00035836-exon-sc0001373-1510915933:65167..65219TCONS_00035836-exon-sc0001373-1510915933:65167..65219Clytia hemisphaericaexon
TCONS_00035836-exon-sc0001373-1510915933:64807..64974TCONS_00035836-exon-sc0001373-1510915933:64807..64974Clytia hemisphaericaexon
TCONS_00035836-exon-sc0001373-1510915933:64398..64554TCONS_00035836-exon-sc0001373-1510915933:64398..64554Clytia hemisphaericaexon
TCONS_00035836-exon-sc0001373-1510915933:64069..64128TCONS_00035836-exon-sc0001373-1510915933:64069..64128Clytia hemisphaericaexon
TCONS_00035836-exon-sc0001373-1491911889:65167..65219TCONS_00035836-exon-sc0001373-1491911889:65167..65219Clytia hemisphaericaexon
TCONS_00035836-exon-sc0001373-1491911889:64807..64974TCONS_00035836-exon-sc0001373-1491911889:64807..64974Clytia hemisphaericaexon
TCONS_00035836-exon-sc0001373-1491911889:64398..64554TCONS_00035836-exon-sc0001373-1491911889:64398..64554Clytia hemisphaericaexon
TCONS_00035836-exon-sc0001373-1491911889:64069..64128TCONS_00035836-exon-sc0001373-1491911889:64069..64128Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035836-proteinTCONS_00035836-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001373supercontigsc0001373:64069..65219 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
32.3793	32.0281	31.0482	29.0029	36.1439	31.203	28.0844	36.1752	26.7632	36.5464	37.3563	22.493	27.2014	23.6478	33.9569	39.7452	30.0057	23.1258	19.1038	33.9499	16.4769	13.8088	23.6253	24.3857	23.9523	24.6428	14.6578	14.5097	25.2773	20.3225
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019172Osteopetrosis-assoc_TM_1
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035836 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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