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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035824 ID=TCONS_00035824|Name=TCONS_00035824|organism=Clytia hemisphaerica|type=transcript|length=5431bpRun BLAST on NCBI protein sequence of TCONS_00035824-protein >TCONS_00035824-protein ID=TCONS_00035824-protein|Name=TCONS_00035824-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1533bp MFVFFKMYSPSLTLVMHSQQHHSKRRFRKTLSSANTGIGTGQPLATIGEYRun BLAST on NCBI transcript from alignment at sc0001370:36854..58863- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00035824 ID=TCONS_00035824|Name=TCONS_00035824|organism=Clytia hemisphaerica|type=transcript|length=22010bp|location=Sequence derived from alignment at sc0001370:36854..58863- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001370:36854..58863- >TCONS_00035824 ID=TCONS_00035824|Name=TCONS_00035824|organism=Clytia hemisphaerica|type=CDS|length=50622bp|location=Sequence derived from alignment at sc0001370:36854..58863- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00035824 vs. Swiss-Prot (Human)
Match: SUCO (SUN domain-containing ossification factor OS=Homo sapiens GN=SUCO PE=1 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 2.881e-43 Identity = 86/206 (41.75%), Postives = 129/206 (62.62%), Query Frame = 2
Query: 1862 NYASPDCGAKVVSANSNAQHSSAILKEDKDAYMLNPCNVQAWVVVELCERIQLDSIDFANFEMFSSSPETFTLHVSNRFPTREWELVQEFETKASSSRQVQNFPIKDKFYA-------KYIKFEVLKYVGKEHYCPLSLLRVYGITEVEEYEQ-------EDRNXXXXXXXXXXXXXXXXXQKSAEDQGLFASAKNAVVGLVNNVA 2437
NYAS +CGAK+++AN A+ +SAIL E+ D YMLNPC+ + W V+ELCE IQ+ +D AN+E+FSS+P+ F + +S+R+PT +W + F + R VQ+FP+ ++ YA KYIK E+L + G EH+CPLSL+RV+G + VEEYE+ +R + + KS+++ L SA NA++ +VN A
Sbjct: 309 NYASVECGAKILAANPEAKSTSAILIENMDLYMLNPCSTKIWFVIELCEPIQVKQLDIANYELFSSTPKDFLVSISDRYPTNKWIKLGTFHGR--DERNVQSFPLDEQMYAKYVKMFIKYIKVELLSHFGSEHFCPLSLIRVFGTSMVEEYEEIADSQYHSERQELFDEDYDYPLDYNTGEDKSSKN--LLGSATNAILNMVNIAA 510 The following BLAST results are available for this feature:
BLAST of TCONS_00035824 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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