TCONS_00035823 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035823
Unique NameTCONS_00035823
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2345

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035823 ID=TCONS_00035823|Name=TCONS_00035823|organism=Clytia hemisphaerica|type=transcript|length=2345bp
ttttagtatTAAAAGCatagaaacaaacaaaaaataggAGAGCCAACTTA
GAAAACAGCATCAACATTGAacattcacacaaaaacatgaTGAATACAAC
GTTGATCAACAGATACAACATGCTGTATACCAACTCTACCAACACTACTT
TACAACCACCAAACCGAATGATGGTAGATTTCTGTGATCTACCAAGGAAG
ATGACAAACAATATTGCATTTGCATTTCTCATTATCTTCATACCAATAAC
TGTTATTGGTAATCTCTTGGTCATTGCTGTTGTAGCATCTTCCAAATcac
ttaaaaaacaaactaCGTTCTTGTTCCTCTCATCTCTGGCAGTCGCAGAT
ACATTAGTTGGATTGGTATCAATGCCTTTCAATGCGAGGATCCAATGGAA
AAGTGGATTCTTATGTCTTGGTGATCGAGCATGTTGGACGTACAACCTGG
AAGAATCATTCCTATCAATAACGTCTgttattcatttatttatcaTTGGT
TTGGATCGATATTTATCTCTTCGTTATGTTTATCAATATAACTCTCTAGC
AACTAAACGTCGTGTCAAAATCGTTATCGCTGGTATTTGGTGTTTCTCAG
CGTTTATGGCTTCAATGTTGATCTTCCAATGGGATGATCCATCTAAAATA
GCAATCATTAGTCGTGGTAATATCTGCGCAGCAAGAAACGAGACTTTTTA
TACATCAATGTATATTGGATGTTTTATCATCCCCCTTTTTGTCATGGTTT
ATATGTATGCGTATGTTTACAAAACTGCATCGCATCATATTCTGGAAATT
GCCAAAATGGAAGTCATGGATTTGAACCATCAAAGTAAAAAATCACGCGA
GAAACGCCGTAAGAAACGCCAGTACAGAACTCTGAGATCTATCGTTGTCG
TCTTTGTCGTTTACTGTATATGTTGGTATCCAACCATTTTCTATATTCTT
ACTATATTTCATGCTAAAGAATTCTGGAGAAAACAACGCAATGAATCGTG
GTGGGTGGTACTACATTTTGTTCTTATCAATTTTCTCCCGCCCTTGAATT
CAACAACTAACCCGTGTATTTACGTCATCTGCAATAAACAATTCCGTAAA
GTTTGTAGACAATTGTATTATAAATTGTCCAATCAGGAACAAAGGACTAT
GCAATTTGCGACCACGTTAATTACGGAAGCACATGACTTAGTCGGGTCAC
GTCATCATTCAACATGTAGTAGAGAAACGGCTAAAAATTCAATGAAGAAT
ACAACTGTGCTTACAAACTTAAACAAAAGTGAACAAACAAAGTTACTATA
GTGTATCACCCTTCGCCATATTCAGGGCCTGCAACATGATTTGAAACGTG
AAGAGGCTGATGAAAATACAGTTGACCTAAAAGACACAACGAAGATTTCT
TGATTCTCTCACCAATATGCCTTATACTGACCTTATTTCCTGTGTTCTGG
GCACGTGATTGACTATGCTTTACAAACTCGAGAACAAACTTAAATACAAG
TGAACTaacaaatattttgaccctCTCTATGACTCAAAATTGTCGATTTG
CAAAGAAATGAAACTTTGGAAGTATGAAgtatagattttgaaaattgact
aACCAATAACtaacttttaaagtttttcaaaaatgaggaaGCTATGCCAC
AAACCTAGCCCACAGGTGGAGCGAGCCCTGATATATGTTAGGGCCTAAAA
TTGACTCGAACAATCTTCTCTTATTAGATTCGATTCTATCTCTCATCTct
gaaatttctattttcatggAAATTGGGACTGTATTACACAGCTCCTTGCC
AACAAAAGAAGCCGAAAAAATCCTACTGGAAAACTTATGTGTATATGCCT
CATTGAAAATATCCCTTTTAAATTCGTTAACCCATTAAGTGATCACTCCG
TAATGAGAGTACACACCcaattaagaaaaaattcatatctgGACAAGATA
TCTATTCAGGCGGGGTGAAAATCAGGGCAGCATGGGGTGAAAATCAGGGC
AGCATGATTCGCAGGGCTCCTAGGTCCAGACTTAATGGTACAGGCGAAAG
AATTGTGCGATCTCATATAGTACCAGTGATACTAAATGGGTAAAACTTCA
GTATTTCATATGACAACTTTTTCTCATAGGTTAAAGATTGCTTATGTAAC
TTATATGTAATTTATTGTATAATATCATATTATGGGAAAttgtaaataaa
tataaaaggTGTAGGTATTGTATAATTTGCTCGAAATATAAACGTAAatt
aaattaatgaaaaattgtAGACGGCGAAAATTAAGCAAAAGGTAGATTTT
TCAATTATGAAACATCATGTAATTAAGATAAAATATGTAATGGTG
Run BLAST on NCBI

protein sequence of TCONS_00035823-protein

>TCONS_00035823-protein ID=TCONS_00035823-protein|Name=TCONS_00035823-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
MMNTTLINRYNMLYTNSTNTTLQPPNRMMVDFCDLPRKMTNNIAFAFLII
FIPITVIGNLLVIAVVASSKSLKKQTTFLFLSSLAVADTLVGLVSMPFNA
RIQWKSGFLCLGDRACWTYNLEESFLSITSVIHLFIIGLDRYLSLRYVYQ
YNSLATKRRVKIVIAGIWCFSAFMASMLIFQWDDPSKIAIISRGNICAAR
NETFYTSMYIGCFIIPLFVMVYMYAYVYKTASHHILEIAKMEVMDLNHQS
KKSREKRRKKRQYRTLRSIVVVFVVYCICWYPTIFYILTIFHAKEFWRKQ
RNESWWVVLHFVLINFLPPLNSTTNPCIYVICNKQFRKVCRQLYYKLSNQ
EQRTMQFATTLITEAHDLVGSRHHSTCSRETAKNSMKNTTVLTNLNKSEQ
TKLL
Run BLAST on NCBI

transcript from alignment at sc0001370:11779..14153-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035823 ID=TCONS_00035823|Name=TCONS_00035823|organism=Clytia hemisphaerica|type=transcript|length=2375bp|location=Sequence derived from alignment at sc0001370:11779..14153- (Clytia hemisphaerica)
TTTTAGTATTAAAAGCATAGAAACAAACAAAAAATAGGAGAGCCAAGCAG
AAACAAACAAAAAATAGGAGAGCCAGCTTAGAAAACAGCATCAACATTGA
ACATTCACACAAAAACATGATGAATACAACGTTGATCAACAGATACAACA
TGCTGTATACCAACTCTACCAACACTACTTTACAACCACCAAACCGAATG
ATGGTAGATTTCTGTGATCTACCAAGGAAGATGACAAACAATATTGCATT
TGCATTTCTCATTATCTTCATACCAATAACTGTTATTGGTAATCTCTTGG
TCATTGCTGTTGTAGCATCTTCCAAATCACTTAAAAAACAAACTACGTTC
TTGTTCCTCTCATCTCTGGCAGTCGCAGATACATTAGTTGGATTGGTATC
AATGCCTTTCAATGCGAGGATCCAATGGAAAAGTGGATTCTTATGTCTTG
GTGATCGAGCATGTTGGACGTACAACCTGGAAGAATCATTCCTATCAATA
ACGTCTGTTATTCATTTATTTATCATTGGTTTGGATCGATATTTATCTCT
TCGTTATGTTTATCAATATAACTCTCTAGCAACTAAACGTCGTGTCAAAA
TCGTTATCGCTGGTATTTGGTGTTTCTCAGCGTTTATGGCTTCAATGTTG
ATCTTCCAATGGGATGATCCATCTAAAATAGCAATCATTAGTCGTGGTAA
TATCTGCGCAGCAAGAAACGAGACTTTTTATACATCAATGTATATTGGAT
GTTTTATCATCCCCCTTTTTGTCATGGTTTATATGTATGCGTATGTTTAC
AAAACTGCATCGCATCATATTCTGGAAATTGCCAAAATGGAAGTCATGGA
TTTGAACCATCAAAGTAAAAAATCACGCGAGAAACGCCGTAAGAAACGCC
AGTACAGAACTCTGAGATCTATCGTTGTCGTCTTTGTCGTTTACTGTATA
TGTTGGTATCCAACCATTTTCTATATTCTTACTATATTTCATGCTAAAGA
ATTCTGGAGAAAACAACGCAATGAATCGTGGTGGGTGGTACTACATTTTG
TTCTTATCAATTTTCTCCCGCCCTTGAATTCAACAACTAACCCGTGTATT
TACGTCATCTGCAATAAACAATTCCGTAAAGTTTGTAGACAATTGTATTA
TAAATTGTCCAATCAGGAACAAAGGACTATGCAATTTGCGACCACGTTAA
TTACGGAAGCACATGACTTAGTCGGGTCACGTCATCATTCAACATGTAGT
AGAGAAACGGCTAAAAATTCAATGAAGAATACAACTGTGCTTACAAACTT
AAACAAAAGTGAACAAACAAAGTTACTATAGTGTATCACCCTTCGCCATA
TTCAGGGCCTGCAACATGATTTGAAACGTGAAGAGGCTGATGAAAATACA
GTTGACCTAAAAGACACAACGAAGATTTCTTGATTCTCTCACCAATATGC
CTTATACTGACCTTATTTCCTGTGTTCTGGGCACGTGATTGACTATGCTT
TACAAACTCGAGAACAAACTTAAATACAAGTGAACTAACAAATATTTTGA
CCCTCTCTATGACTCAAAATTGTCGATTTGCAAAGAAATGAAACTTTGGA
AGTATGAAGTATAGATTTTGAAAATTGACTAACCAATAACTAACTTTTAA
AGTTTTTCAAAAATGAGGAAGCTATGCCACAAACCTAGCCCACAGGTGGA
GCGAGCCCTGATATATGTTAGGGCCTAAAATTGACTCGAACAATCTTCTC
TTATTAGATTCGATTCTATCTCTCATCTCTGAAATTTCTATTTTCATGGA
AATTGGGACTGTATTACACAGCTCCTTGCCAACAAAAGAAGCCGAAAAAA
TCCTACTGGAAAACTTATGTGTATATGCCTCATTGAAAATATCCCTTTTA
AATTCGTTAACCCATTAAGTGATCACTCCGTAATGAGAGTACACACCCAA
TTAAGAAAAAATTCATATCTGGACAAGATATCTATTCAGGCGGGGTGAAA
ATCAGGGCAGCATGGGGTGAAAATCAGGGCAGCATGATTCGCAGGGCTCC
TAGGTCCAGACTTAATGGTACAGGCGAAAGAATTGTGCGATCTCATATAG
TACCAGTGATACTAAATGGGTAAAACTTCAGTATTTCATATGACAACTTT
TTCTCATAGGTTAAAGATTGCTTATGTAACTTATATGTAATTTATTGTAT
AATATCATATTATGGGAAATTGTAAATAAATATAAAAGGTGTAGGTATTG
TATAATTTGCTCGAAATATAAACGTAAATTAAATTAATGAAAAATTGTAG
ACGGCGAAAATTAAGCAAAAGGTAGATTTTTCAATTATGAAACATCATGT
AATTAAGATAAAATATGTAATGGTG

Coding sequence (CDS) from alignment at sc0001370:11779..14153-

>TCONS_00035823 ID=TCONS_00035823|Name=TCONS_00035823|organism=Clytia hemisphaerica|type=CDS|length=1215bp|location=Sequence derived from alignment at sc0001370:11779..14153- (Clytia hemisphaerica)
ATGATGAATACAACGTTGATCAACAGATACAACATGCTGTATACCAACTC
TACCAACACTACTTTACAACCACCAAACCGAATGATGGTAGATTTCTGTG
ATCTACCAAGGAAGATGACAAACAATATTGCATTTGCATTTCTCATTATC
TTCATACCAATAACTGTTATTGGTAATCTCTTGGTCATTGCTGTTGTAGC
ATCTTCCAAATCACTTAAAAAACAAACTACGTTCTTGTTCCTCTCATCTC
TGGCAGTCGCAGATACATTAGTTGGATTGGTATCAATGCCTTTCAATGCG
AGGATCCAATGGAAAAGTGGATTCTTATGTCTTGGTGATCGAGCATGTTG
GACGTACAACCTGGAAGAATCATTCCTATCAATAACGTCTGTTATTCATT
TATTTATCATTGGTTTGGATCGATATTTATCTCTTCGTTATGTTTATCAA
TATAACTCTCTAGCAACTAAACGTCGTGTCAAAATCGTTATCGCTGGTAT
TTGGTGTTTCTCAGCGTTTATGGCTTCAATGTTGATCTTCCAATGGGATG
ATCCATCTAAAATAGCAATCATTAGTCGTGGTAATATCTGCGCAGCAAGA
AACGAGACTTTTTATACATCAATGTATATTGGATGTTTTATCATCCCCCT
TTTTGTCATGGTTTATATGTATGCGTATGTTTACAAAACTGCATCGCATC
ATATTCTGGAAATTGCCAAAATGGAAGTCATGGATTTGAACCATCAAAGT
AAAAAATCACGCGAGAAACGCCGTAAGAAACGCCAGTACAGAACTCTGAG
ATCTATCGTTGTCGTCTTTGTCGTTTACTGTATATGTTGGTATCCAACCA
TTTTCTATATTCTTACTATATTTCATGCTAAAGAATTCTGGAGAAAACAA
CGCAATGAATCGTGGTGGGTGGTACTACATTTTGTTCTTATCAATTTTCT
CCCGCCCTTGAATTCAACAACTAACCCGTGTATTTACGTCATCTGCAATA
AACAATTCCGTAAAGTTTGTAGACAATTGTATTATAAATTGTCCAATCAG
GAACAAAGGACTATGCAATTTGCGACCACGTTAATTACGGAAGCACATGA
CTTAGTCGGGTCACGTCATCATTCAACATGTAGTAGAGAAACGGCTAAAA
ATTCAATGAAGAATACAACTGTGCTTACAAACTTAAACAAAAGTGAACAA
ACAAAGTTACTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021032XLOC_021032Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035823-proteinTCONS_00035823-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035823-exon-sc0001370-1575043694:14108..14153TCONS_00035823-exon-sc0001370-1575043694:14108..14153Clytia hemisphaericaexon
TCONS_00035823-exon-sc0001370-1575043694:11779..14077TCONS_00035823-exon-sc0001370-1575043694:11779..14077Clytia hemisphaericaexon
TCONS_00035823-exon-sc0001370-1510915933:14108..14153TCONS_00035823-exon-sc0001370-1510915933:14108..14153Clytia hemisphaericaexon
TCONS_00035823-exon-sc0001370-1510915933:11779..14077TCONS_00035823-exon-sc0001370-1510915933:11779..14077Clytia hemisphaericaexon
TCONS_00035823-exon-sc0001370-1491911889:14108..14153TCONS_00035823-exon-sc0001370-1491911889:14108..14153Clytia hemisphaericaexon
TCONS_00035823-exon-sc0001370-1491911889:11779..14077TCONS_00035823-exon-sc0001370-1491911889:11779..14077Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001370supercontigsc0001370:11779..14153 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.053335	0.0218294	0	0	0.0161973	0	0	0	1.51073	0.717683	0	0	1.09581	0.888885	3.45906	3.73419	6.99785	7.1925	1.42291	2.25367	1.8621	1.75578	0	0.0354981	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
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BLAST of TCONS_00035823 vs. Swiss-Prot (Human)
Match: 5HT4R (5-hydroxytryptamine receptor 4 OS=Homo sapiens GN=HTR4 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.619e-19
Identity = 90/340 (26.47%), Postives = 148/340 (43.53%), Query Frame = 3 
Query:  249 TVIGNLLVIAVVASSKSLKKQTTFLFLSSLAVADTLVGLVSMPFNARIQWKSGFLCLGDRACWTYNLEESFLSITSVIHLFIIGLDRYLSL-RYVYQYNSLATKRRVKIVIAGIWCFSAFMASMLIFQ-WDDPSKIAIISRGNICAARNETFYTSMY-----IGC----FIIPLFVMVYMYAYVYKTASHHILEIAKMEVMDLNHXXXXXXXXXXXXXXXXT----LRSIVVVFVVYCICWYPTIFYILTIFHAKEFWRKQRNESWWVVLHFVLINFLPPLNSTTNPCIYVICNKQFRKV------CRQLYYKLSNQEQRTMQFATTLITEAHDLVGSRH 1205
             ++GNLLV+  V   + L+K  T  F+ SLA AD LV ++ MPF A I+        G+  C      +  L+  S+ HL  I LDRY ++      Y +  T  R+ +++ G W    F++ + I Q W++   I +I +       N T+   M      I C    F IP  +MV  Y  +Y TA  H  +I  ++    + +S+     +    + RT     +++ ++   +C+CW P  F++  I     F         W    F+ + +   +NS  NP +Y   NK FR+       C    Y+  +   +T+  +TT I       GS H
Sbjct:   33 AILGNLLVMVAVCWDRQLRKIKTNYFIVSLAFADLLVSVLVMPFGA-IELVQDIWIYGEVFCLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRNKMTPLRIALMLGGCWVIPTFISFLPIMQGWNNIGIIDLIEKRKFNQNSNSTYCVFMVNKPYAITCSVVAFYIPFLLMVLAYYRIYVTAKEHAHQIQMLQRAGASSESRPQSADQHSTHRMRTETKAAKTLCIIMGCFCLCWAP--FFVTNI--VDPFIDYTVPGQVWTA--FLWLGY---INSGLNPFLYAFLNKSFRRAFLIILCCDDERYRRPSILGQTVPCSTTTIN------GSTH 356
The following BLAST results are available for this feature:
BLAST of TCONS_00035823 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
5HT4R3.619e-1926.475-hydroxytryptamine receptor 4 OS=Homo sapiens GN=... [more]
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