TCONS_00035823-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00035823-protein
Unique Name	TCONS_00035823-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	404

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00035823-protein ID=TCONS_00035823-protein|Name=TCONS_00035823-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
MMNTTLINRYNMLYTNSTNTTLQPPNRMMVDFCDLPRKMTNNIAFAFLII
FIPITVIGNLLVIAVVASSKSLKKQTTFLFLSSLAVADTLVGLVSMPFNA
RIQWKSGFLCLGDRACWTYNLEESFLSITSVIHLFIIGLDRYLSLRYVYQ
YNSLATKRRVKIVIAGIWCFSAFMASMLIFQWDDPSKIAIISRGNICAAR
NETFYTSMYIGCFIIPLFVMVYMYAYVYKTASHHILEIAKMEVMDLNHQS
KKSREKRRKKRQYRTLRSIVVVFVVYCICWYPTIFYILTIFHAKEFWRKQ
RNESWWVVLHFVLINFLPPLNSTTNPCIYVICNKQFRKVCRQLYYKLSNQ
EQRTMQFATTLITEAHDLVGSRHHSTCSRETAKNSMKNTTVLTNLNKSEQ
TKLL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_021032	XLOC_021032	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00035823	TCONS_00035823	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 265..289 score: 22.72 coord: 311..337 score: 31.87 coord: 77..98 score: 35.35 coord: 43..67 score: 25.35 coord: 123..145 score: 26.86 coord: 205..228 score: 23.82 coord: 159..180 score: 21.54
IPR000276	G protein-coupled receptor, rhodopsin-like	SMART	SM01381	7TM_GPCR_Srsx_2	coord: 52..344 e-value: 3.8E-5 score: -33.7
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 58..329 e-value: 2.4E-42 score: 144.9
IPR000276	G protein-coupled receptor, rhodopsin-like	PROSITE	PS00237	G_PROTEIN_RECEP_F1_1	coord: 129..145
None	No IPR available	GENE3D	1.20.1070.10		coord: 10..392 e-value: 2.2E-61 score: 207.0
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 2..352
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 58..329 score: 33.872

Blast

[Close]

BLAST of TCONS_00035823-protein vs. Swiss-Prot (Human)
Match: 5HT4R (5-hydroxytryptamine receptor 4 OS=Homo sapiens GN=HTR4 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 6.576e-25
Identity = 93/352 (26.42%), Postives = 153/352 (43.47%), Query Frame = 0

Query:   43 IAFAFLIIFIPITVIGNLLVIAVVASSKSLKKQTTFLFLSSLAVADTLVGLVSMPFNARIQWKSGFLCLGDRACWTYNLEESFLSITSVIHLFIIGLDRYLSL-RYVYQYNSLATKRRVKIVIAGIWCFSAFMASMLIFQ-WDDPSKIAIISRGNICAARNETFYTSMY-----IGC----FIIPLFVMVYMYAYVYKTASHHILEIAKMEVMDLNHQSKKSREKRRKKRQYRT----LRSIVVVFVVYCICWYPTIFYILTIFHAKEFWRKQRNESWWVVLHFVLINFLPPLNSTTNPCIYVICNKQFRKV------CRQLYYKLSNQEQRTMQFATTLITEAHDLVGSRH 373
            +   FL   I + ++GNLLV+  V   + L+K  T  F+ SLA AD LV ++ MPF A I+        G+  C      +  L+  S+ HL  I LDRY ++      Y +  T  R+ +++ G W    F++ + I Q W++   I +I +       N T+   M      I C    F IP  +MV  Y  +Y TA  H  +I  ++    + +S+     +    + RT     +++ ++   +C+CW P  F++  I     F         W    F+ + +   +NS  NP +Y   NK FR+       C    Y+  +   +T+  +TT I       GS H
Sbjct:   21 VLLTFLSTVILMAILGNLLVMVAVCWDRQLRKIKTNYFIVSLAFADLLVSVLVMPFGA-IELVQDIWIYGEVFCLVRTSLDVLLTTASIFHLCCISLDRYYAICCQPLVYRNKMTPLRIALMLGGCWVIPTFISFLPIMQGWNNIGIIDLIEKRKFNQNSNSTYCVFMVNKPYAITCSVVAFYIPFLLMVLAYYRIYVTAKEHAHQIQMLQRAGASSESRPQSADQHSTHRMRTETKAAKTLCIIMGCFCLCWAP--FFVTNI--VDPFIDYTVPGQVWTA--FLWLGY---INSGLNPFLYAFLNKSFRRAFLIILCCDDERYRRPSILGQTVPCSTTTIN------GSTH 356

The following BLAST results are available for this feature:

BLAST of TCONS_00035823-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00035823-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
5HT4R	6.576e-25	26.42	5-hydroxytryptamine receptor 4 OS=Homo sapiens GN=...	[more]

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TCONS_00035823-protein (polypeptide) - C. hemisphaerica