TCONS_00035821 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035821
Unique NameTCONS_00035821
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1212

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035821 ID=TCONS_00035821|Name=TCONS_00035821|organism=Clytia hemisphaerica|type=transcript|length=1212bp
GCTAAGCCAATCAGACACGAGTAGAATTTGAAAACGTGGTCAAAAAGACA
TTAATGAATATAGTGATCAGGTCTGTTTTATACAGATACTGATAAGACAC
GAACTTCAGACCATTAGAGAATCTTCATCAGAAAGCAACTCATAACCAAG
TTGTTGTCACCAAAACAGTGTATCGAATACCAAGGAATATCAATCATCAC
ACCAGGATAATCTACGCCAAGAAAATGAGACGATCATCTTTTCTTATATT
GATGTTCTTTTCTCTTTGGACTGTAACTGATGGTGCAATGCCTTGTATTG
GCAAAAATGGAAAGCCTGTCGATATGTATGTGTTGTACAAGCTTCCGAAA
ATCTACTGGCAAGACGTACCCGAGTACGTAAAGGACGGCTCTGCGTATGC
GTATCTCGATAACGAAGATATGGAATTTACTTTATCACCTACCTTGATTA
CGTCACCACAAAGTGTGGCCGGACTCACTTTAAATCAAGTATACGACGCA
TATGAAAATAGAGCAACACCGAGTGGCCAGGCACATTTATTTTACAATGA
TGCTAACCTTGATATCAatgatGATAGTTATAATTCCAAATGGGGCCACA
CTAAAGGTGCAATGGCTTTCGATCAACAAATTGGATTCTGGATGATCCAC
AGTGTACCGCATTTCCCGGATTTCGCCAAGAACGGTTATAGTTATCCAAG
TAGCGGACACAAGTATGGTCAAATGTTTTTCTGTATGACATTGAATAGTT
CTGCTATCAATGATGTTGGGCTGCAATTGCGCTATAATAATCCGTACGTA
CAAGACTCGTTTATGCCAGAAGAATGGAATGACAAATTCCCAAATATCGC
AGCTTTACTTAAAGGAGAAATCATTGACAGTGACCCTTACTACCATATAC
AAGACTTTATATCTCTTGGTGGAATGAAACTCAAGTCATTCGCGAAAGGA
ACCAAATTCAACAAAGACCTCTATTCAACACTTGTTGCACCCACACTGAA
AATAAATCTTCTAACAGAAACTTGGCAAAACGGTCAAGGTAATCTCGGAT
CAGCATGTAATACTTCATACACTGTTGAAGATGTGACAAATATCAAATTG
GATGTTCCTGATGGCTCTTATTACGCATTCCGTGATACGAACGATCATTC
GAAGTACGCTCTTAGTGACACGGCTGACAATCCGTACGTCTGTATTGGGG
ATATTAACAGAC
Run BLAST on NCBI

protein sequence of TCONS_00035821-protein

>TCONS_00035821-protein ID=TCONS_00035821-protein|Name=TCONS_00035821-protein|organism=Clytia hemisphaerica|type=polypeptide|length=329bp
MRRSSFLILMFFSLWTVTDGAMPCIGKNGKPVDMYVLYKLPKIYWQDVPE
YVKDGSAYAYLDNEDMEFTLSPTLITSPQSVAGLTLNQVYDAYENRATPS
GQAHLFYNDANLDINDDSYNSKWGHTKGAMAFDQQIGFWMIHSVPHFPDF
AKNGYSYPSSGHKYGQMFFCMTLNSSAINDVGLQLRYNNPYVQDSFMPEE
WNDKFPNIAALLKGEIIDSDPYYHIQDFISLGGMKLKSFAKGTKFNKDLY
STLVAPTLKINLLTETWQNGQGNLGSACNTSYTVEDVTNIKLDVPDGSYY
AFRDTNDHSKYALSDTADNPYVCIGDINR
Run BLAST on NCBI

transcript from alignment at sc0001370:5626..10185+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035821 ID=TCONS_00035821|Name=TCONS_00035821|organism=Clytia hemisphaerica|type=transcript|length=4560bp|location=Sequence derived from alignment at sc0001370:5626..10185+ (Clytia hemisphaerica)
GCTAAGCCAATCAGACACGAGTAGAATTTGAAAACGTGGTCAAAAAGACA
TTAATGAATATAGTGATCAGGTCTGTTTTATACAGATACTGATAAGACAC
GAACTTCAGACCATTAGAGAATCTTCATCAGAAAGCAACTCATAACCAAG
TTGTTGTCACCAAAACAGTGTATCGAATACCAAGGTATGTACTTCGCTTC
TAAATTTCGGGAAATCTTCTATATTTTGTTTTAGGAGCAGGGCTTCGAGC
Tgaacaagaagccggagcggcgtgaaggtccagctgacgtggcaataacc
gaatgtcgttcgtaccgggttccttaagtgacgcaaaaaaaatttccttc
ccatccaccactctgagcttctattctttgacactttctttgtattgcta
agttttgaacatttttgatgcatttcccgaaatttcgaattttcacatga
tgggattcgaaccgaCTTCGGAAGAAGCTATATCGGATCGCCCAAAGTTA
cctttatgtttttattttattttcttatctctgatcctgtctttctcttt
tctgactgtctgagtttctgagacttagtttctcatttctgactaagTTT
ACATACCTGTATCATATTTTGACCAACCACATCATTCGCACCGTGCGGGG
TTCGAACCACCatcaaagaaagaccttcaatTTCGGAAACCAACGCctta
tccgttgagccatcgacgcacagcaaaatcacgcaattcatagacgccaa
aagacgggggtaatgttattatgtTATATTATGTTATTATGTTATACCCc
cggaaaggtgactatcagcgatccgtggataagaaaataaaataaaaaaa
tgaaggtaactttgggcgaTCCGATATAATTCTCTCCCTTtatacaaagc
acctatgatagaacgccagcgccttaaccacttGGTTATAAACAGTTGGT
TATAAACACGGTATTTACTTCAAACTCTACCCGGtggctaaaaccctaac
caggggttgACTCCCATCCCCatccctagccctaaccctacctgaaacaa
ccctttaatctaaccgggaaatttgactctactaccaattcaatccaaaa
cataggtcaaacatcgcgtgGGTAGGCGGGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtct
agatcggcggttggtttagcctggacttgttaatttattgcgcgcacagg
ccccgacaaagacaaaatcttttcgatcagttgctttttaaaggtccatt
cggCTGCGCGCTGGACTAAATACACATTGTTTCAACTTACATTAGACATC
TTTAACATGTATTACAGTATGTAATAATACCAAAATACTATTACAGTATA
TATAATACCGTTTCATGACTAAACTTTCTCTTTCCCGGAGAAACTTTCCT
ATTGCAACTTTATAACAAAAAAGACCAACACTCTGGGAAGgtacaaaaag
aaatttcgaCTTCTTAGGCGGTCATTCTCAAGACAGTAACGCGTTGTCTA
CGCAATGTGTATGCGACAAATGCAAATATTTTCGGTCTGCCTGAAAATAC
AGCAGAAACATCCCGGAAATGCGCCAGGAAAGTTTCCCCTGGATGATATA
AGTTTAGCCATCATACTGTATTTGTGTGTGACGTTTCTTCAAAACGTTTC
CAGACAAAGTTTCAGACATAAATTTCACAATCGACGCTTAAATCTGCATG
CAAGCCTTATTGCTTTTTCTGTTTCTGATTCTTTTTCTAGGAATATCAAT
CATCACACCAGGATAATCTACGCCAAGAAAATGAGACGATCATCTTTTCT
TATATTGATGTTCTTTTCTCTTTGGACTGTAACTGATGGTGCAATGCCTT
GTATTGGCAAAAATGGAAAGCCTGTCGATATGTAAGAAAATATCAAATCT
GTTTTTCCAAAAGCTACTCACTAGGAAAGTAGTCTTTTCTCTTAATCCCT
TTACAGCACTTGGTACTAATAATAAGTTTCTCCCCTTTCCATCCAAAATA
GAAATTGGCCTCAAAAATCGCCCTTACttataatttgttgaaaaaaaaat
tagctaTTACAAATTCTTTTATGAATTCACATTGGGCGCTACTGTGAAAA
AGAATTCACCCGAATAGATGAATTTTGACTTCCCACCGCATCGCCgatac
aggggtgtaagaaACTTGTTATTTATAGGTATGTGTTGTACAAGCTTCCG
AAAATCTACTGGCAAGACGTACCCGAGTACGTAAAGGACGGCTCTGCGTA
TGCGTATCTCGATAACGAAGATATGGAATTTACTTTATCACCTACCTTGA
TTACGTCACCACAAAGTGTGGCCGGACTCACTTTAAATCAAGTATACGAC
GCATATGAAAATAGAGCAACACCGAGTGGCCAGGCACATTTATTTTACAA
TGATGCTAACCTTGATATCAGTAAGTATCTCCCGGAAAAATtgatgataa
aaatgaaaatggttAGCCTAAATGGTAAAGATTTGAATTGAAAGGAAAAA
TGGTTAAGGTCgaggaaaaatgttttaaagctTCTCAGGAAGTTTATTGA
AGATTACTTTCTAGGTAGTGTAGGATTTTTACTTCGTTTCTTGGTACTAC
TATTTAATTGCATAGCGAAGTCAGTTTCCTCCTTCCTTTAACTAATTTCG
TTCATCGGATAAGAGCATGTTTCTCAGGTAATGGTTCCGTTTTGCTCGTC
CGAAACGAAAAGAAGTCATTTTATTGATTAGAAGTAGCAAGCACCtaacc
aaaaaccgggatttgtTATCCATCCgcccgtttcttagtgagttccactt
tgatgattttcgaaaaatagaagctttTCAAGTGCTTTGCTTCGacgcaa
attcaatttttctgccACTGCAGTAGCATCGAAAGTTtattaaagtgacg
tcaaaaatcaaatgtttaCAGCGTGGGCTCTAAATATTCCAAAAAGTCGC
AAATtggaatagacgttactgcGTGGAGAAAAGGCCGTGatgtctagtat
aggctaggttagaagtgacgtaaaactcaAATGTAACTAATAGAATAGct
tcgtttcgtttcggagggaaacggaaccgtaacgtgtAAACGTGGTCTAA
AATTCcctatctttttttttaaagatgatGATAGTTATAATTCCAAATGG
GGCCACACTAAAGGTGCAATGGCTTTCGATCAACAAATTGGATTCTGGAT
GATCCACAGTGTACCGCATTTCCCGGATTTCGCCAAGAACGGTTATAGTT
ATCCAAGTAGCGGACACAAGTATGGTCAAATGTTTTTCTGTATGACATTG
AATAGTTCTGCTATCAATGATGTTGGGCTGCAATTGCGCTATAATAATCC
GTACGTACAAGACTCGTTTATGCCAGAAGAATGGAATGACAAATTCCCAA
ATATCGCAGCTTTACTTAAAGGTATTTTTTATCATGAATACtctaacttt
ttggggaaaatcatcttgaaatattcttttcataactgaaaaaatggcat
aattttgagccaatttttttatattttgagccttattgttAATCTTGGAC
TCGGAGCCACTTGCACAACCTTTTGATTTTACTGGTTGCAGTGCCCGTGA
GTGCTATCAGAATGGCTAAGGGACTTGAATTTGCCTTTTTGTATATTGgc
aatcaatattttaaaatgctcaaaaatggcattcttagtcTTAGGTTCAT
TTGCCAAATTCAATGATGGTGATAGACATTCCTATAAAGCGTATCCTGTC
CTCGCAATAAAACGTACAGTGGAACTCTAGAGCTCGAATCTCtattactc
gaatgtctccttgaGCAAGTTTGAGTTGCGAGCACAGATTTAtaaatccc
gaagggctagacgttgtgctttaagccatcgcagatAAATAACaaattga
atatcggaaaaaatattgtcgttgcgaaaacctgcgaagcttctgattgg
tcaagcgctgaaattctattgtaatgtcatgtAACCTAGGTAAGATTTTC
TTCCTTACCacagcacacttttcagccgaaGCACGACATCTATCCCTTCG
GTTCCGAGTGCTTGTTTTAGTTCTGAAGAATCTACTGTGATTTGTTTACA
TTGAACGTTTAGGAGAAATCATTGACAGTGACCCTTACTACCATATACAA
GACTTTATATCTCTTGGTGGAATGAAACTCAAGTCATTCGCGAAAGGAAC
CAAATTCAACAAAGACCTCTATTCAACACTTGTTGCACCCACACTGAAAA
TAAATCTTCTAACAGAAACTTGGCAAAACGGTCAAGGTAATCTCGGATCA
GCATGTAATACTTCATACACTGTTGAAGATGTGACAAATATCAAATTGGA
TGTTCCTGATGGCTCTTATTACGCATTCCGTGATACGAACGATCATTCGA
AGTACGCTCTTAGTGACACGGCTGACAATCCGTACGTCTGTATTGGGGAT
ATTAACAGAC

Coding sequence (CDS) from alignment at sc0001370:5626..10185+

>TCONS_00035821 ID=TCONS_00035821|Name=TCONS_00035821|organism=Clytia hemisphaerica|type=CDS|length=3948bp|location=Sequence derived from alignment at sc0001370:5626..10185+ (Clytia hemisphaerica)
ATGAGACGATCATCTTTTCTTATATTGATGTTCTTTTCTCTTTGGACTGT
AACTGATGGTGCAATGCCTTGTATTGGCAAAAATGGAAAGCCTGTCGATA
TGTATGTGTTGTACAAGCTTCCGAAAATCTACTGGCAAGACGTACCCGAG
TACGTAAAGGACGGCTCTGCGTATGCGTATCTCGATAACGAAGATATGGA
ATTTACTTTATCACCTACCTTGATTACGTCACCACAAAGTGTGGCCGGAC
TCACTTTAAATCAAGTATACGACGCATATGAAAATAGAGCAACACCGAGT
GGCCAGGCACATTTATTTTACAATGATGCTAACCTTGATATCAatgatGA
TAGTTATAATTCCAAATGGGGCCACACTAAAGGTGCAATGGCTTTCGATC
AACAAATTGGATTCTGGATGATCCACAGTGTACCGCATTTCCCGGATTTC
GCCAAGAACGGTTATAGTTATCCAAGTAGCGGACACAAGTATGGTCAAAT
GTTTTTCTGTATGACATTGAATAGTTCTGCTATCAATGATGTTGGGCTGC
AATTGCGCTATAATAATCCGTACGTACAAGACTCGTTTATGCCAGAAGAA
TGGAATGACAAATTCCCAAATATCGCAGCTTTACTTAAAGGAGAAATCAT
TGACAGTGACCCTTACTACCATATACAAGACTTTATATCTCTTGGTGGAA
TGAAACTCAAGTCATTCGCGAAAGGAACCAAATTCAACAAAGACCTCTAT
TCAACACTTGTTGCACCCACACTGAAAATAAATCTTCTAACAGAAACTTG
GCAAAACGGTCAAGGTAATCTCGGATCAGCATGTAATACTTCATACACTG
TTGAAGATGTGACAAATATCAAATTGGATGTTCCTGATGGCTCTTATTAC
GCATTCCGTGATACGAACGATCATTCGAAGTACGCTCTTAGTGACACGGC
TGACAATCCGTACGTCTGTATTGGGGATATTAACAGAATGAGACGATCAT
CTTTTCTTATATTGATGTTCTTTTCTCTTTGGACTGTAACTGATGGTGCA
ATGCCTTGTATTGGCAAAAATGGAAAGCCTGTCGATATGTATGTGTTGTA
CAAGCTTCCGAAAATCTACTGGCAAGACGTACCCGAGTACGTAAAGGACG
GCTCTGCGTATGCGTATCTCGATAACGAAGATATGGAATTTACTTTATCA
CCTACCTTGATTACGTCACCACAAAGTGTGGCCGGACTCACTTTAAATCA
AGTATACGACGCATATGAAAATAGAGCAACACCGAGTGGCCAGGCACATT
TATTTTACAATGATGCTAACCTTGATATCAatgatGATAGTTATAATTCC
AAATGGGGCCACACTAAAGGTGCAATGGCTTTCGATCAACAAATTGGATT
CTGGATGATCCACAGTGTACCGCATTTCCCGGATTTCGCCAAGAACGGTT
ATAGTTATCCAAGTAGCGGACACAAGTATGGTCAAATGTTTTTCTGTATG
ACATTGAATAGTTCTGCTATCAATGATGTTGGGCTGCAATTGCGCTATAA
TAATCCGTACGTACAAGACTCGTTTATGCCAGAAGAATGGAATGACAAAT
TCCCAAATATCGCAGCTTTACTTAAAGGAGAAATCATTGACAGTGACCCT
TACTACCATATACAAGACTTTATATCTCTTGGTGGAATGAAACTCAAGTC
ATTCGCGAAAGGAACCAAATTCAACAAAGACCTCTATTCAACACTTGTTG
CACCCACACTGAAAATAAATCTTCTAACAGAAACTTGGCAAAACGGTCAA
GGTAATCTCGGATCAGCATGTAATACTTCATACACTGTTGAAGATGTGAC
AAATATCAAATTGGATGTTCCTGATGGCTCTTATTACGCATTCCGTGATA
CGAACGATCATTCGAAGTACGCTCTTAGTGACACGGCTGACAATCCGTAC
GTCTGTATTGGGGATATTAACAGAATGAGACGATCATCTTTTCTTATATT
GATGTTCTTTTCTCTTTGGACTGTAACTGATGGTGCAATGCCTTGTATTG
GCAAAAATGGAAAGCCTGTCGATATGTATGTGTTGTACAAGCTTCCGAAA
ATCTACTGGCAAGACGTACCCGAGTACGTAAAGGACGGCTCTGCGTATGC
GTATCTCGATAACGAAGATATGGAATTTACTTTATCACCTACCTTGATTA
CGTCACCACAAAGTGTGGCCGGACTCACTTTAAATCAAGTATACGACGCA
TATGAAAATAGAGCAACACCGAGTGGCCAGGCACATTTATTTTACAATGA
TGCTAACCTTGATATCAatgatGATAGTTATAATTCCAAATGGGGCCACA
CTAAAGGTGCAATGGCTTTCGATCAACAAATTGGATTCTGGATGATCCAC
AGTGTACCGCATTTCCCGGATTTCGCCAAGAACGGTTATAGTTATCCAAG
TAGCGGACACAAGTATGGTCAAATGTTTTTCTGTATGACATTGAATAGTT
CTGCTATCAATGATGTTGGGCTGCAATTGCGCTATAATAATCCGTACGTA
CAAGACTCGTTTATGCCAGAAGAATGGAATGACAAATTCCCAAATATCGC
AGCTTTACTTAAAGGAGAAATCATTGACAGTGACCCTTACTACCATATAC
AAGACTTTATATCTCTTGGTGGAATGAAACTCAAGTCATTCGCGAAAGGA
ACCAAATTCAACAAAGACCTCTATTCAACACTTGTTGCACCCACACTGAA
AATAAATCTTCTAACAGAAACTTGGCAAAACGGTCAAGGTAATCTCGGAT
CAGCATGTAATACTTCATACACTGTTGAAGATGTGACAAATATCAAATTG
GATGTTCCTGATGGCTCTTATTACGCATTCCGTGATACGAACGATCATTC
GAAGTACGCTCTTAGTGACACGGCTGACAATCCGTACGTCTGTATTGGGG
ATATTAACAGAATGAGACGATCATCTTTTCTTATATTGATGTTCTTTTCT
CTTTGGACTGTAACTGATGGTGCAATGCCTTGTATTGGCAAAAATGGAAA
GCCTGTCGATATGTATGTGTTGTACAAGCTTCCGAAAATCTACTGGCAAG
ACGTACCCGAGTACGTAAAGGACGGCTCTGCGTATGCGTATCTCGATAAC
GAAGATATGGAATTTACTTTATCACCTACCTTGATTACGTCACCACAAAG
TGTGGCCGGACTCACTTTAAATCAAGTATACGACGCATATGAAAATAGAG
CAACACCGAGTGGCCAGGCACATTTATTTTACAATGATGCTAACCTTGAT
ATCAatgatGATAGTTATAATTCCAAATGGGGCCACACTAAAGGTGCAAT
GGCTTTCGATCAACAAATTGGATTCTGGATGATCCACAGTGTACCGCATT
TCCCGGATTTCGCCAAGAACGGTTATAGTTATCCAAGTAGCGGACACAAG
TATGGTCAAATGTTTTTCTGTATGACATTGAATAGTTCTGCTATCAATGA
TGTTGGGCTGCAATTGCGCTATAATAATCCGTACGTACAAGACTCGTTTA
TGCCAGAAGAATGGAATGACAAATTCCCAAATATCGCAGCTTTACTTAAA
GGAGAAATCATTGACAGTGACCCTTACTACCATATACAAGACTTTATATC
TCTTGGTGGAATGAAACTCAAGTCATTCGCGAAAGGAACCAAATTCAACA
AAGACCTCTATTCAACACTTGTTGCACCCACACTGAAAATAAATCTTCTA
ACAGAAACTTGGCAAAACGGTCAAGGTAATCTCGGATCAGCATGTAATAC
TTCATACACTGTTGAAGATGTGACAAATATCAAATTGGATGTTCCTGATG
GCTCTTATTACGCATTCCGTGATACGAACGATCATTCGAAGTACGCTCTT
AGTGACACGGCTGACAATCCGTACGTCTGTATTGGGGATATTAACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021030XLOC_021030Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035821-exon-sc0001370-1491911889:5626..5809TCONS_00035821-exon-sc0001370-1491911889:5626..5809Clytia hemisphaericaexon
TCONS_00035821-exon-sc0001370-1510915933:5626..5809TCONS_00035821-exon-sc0001370-1510915933:5626..5809Clytia hemisphaericaexon
TCONS_00035821-exon-sc0001370-1575043694:5626..5809TCONS_00035821-exon-sc0001370-1575043694:5626..5809Clytia hemisphaericaexon
TCONS_00035821-exon-sc0001370-1491911889:7466..7606TCONS_00035821-exon-sc0001370-1491911889:7466..7606Clytia hemisphaericaexon
TCONS_00035821-exon-sc0001370-1510915933:7466..7606TCONS_00035821-exon-sc0001370-1510915933:7466..7606Clytia hemisphaericaexon
TCONS_00035821-exon-sc0001370-1575043694:7466..7606TCONS_00035821-exon-sc0001370-1575043694:7466..7606Clytia hemisphaericaexon
TCONS_00035821-exon-sc0001370-1491911889:7904..8145TCONS_00035821-exon-sc0001370-1491911889:7904..8145Clytia hemisphaericaexon
TCONS_00035821-exon-sc0001370-1510915933:7904..8145TCONS_00035821-exon-sc0001370-1510915933:7904..8145Clytia hemisphaericaexon
TCONS_00035821-exon-sc0001370-1575043694:7904..8145TCONS_00035821-exon-sc0001370-1575043694:7904..8145Clytia hemisphaericaexon
TCONS_00035821-exon-sc0001370-1491911889:8850..9146TCONS_00035821-exon-sc0001370-1491911889:8850..9146Clytia hemisphaericaexon
TCONS_00035821-exon-sc0001370-1510915933:8850..9146TCONS_00035821-exon-sc0001370-1510915933:8850..9146Clytia hemisphaericaexon
TCONS_00035821-exon-sc0001370-1575043694:8850..9146TCONS_00035821-exon-sc0001370-1575043694:8850..9146Clytia hemisphaericaexon
TCONS_00035821-exon-sc0001370-1491911889:9838..10185TCONS_00035821-exon-sc0001370-1491911889:9838..10185Clytia hemisphaericaexon
TCONS_00035821-exon-sc0001370-1510915933:9838..10185TCONS_00035821-exon-sc0001370-1510915933:9838..10185Clytia hemisphaericaexon
TCONS_00035821-exon-sc0001370-1575043694:9838..10185TCONS_00035821-exon-sc0001370-1575043694:9838..10185Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035821-proteinTCONS_00035821-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001370supercontigsc0001370:5626..10185 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.04847	1.11704	0.410406	0.397808	0.429306	0.791567	49.4173	46.0493	12.1281	12.8018	4.37768	2.95709	2.18778	1.61241	2.91911	2.52439	0.90378	1.0079	1.17025	1.97155	0.343929	0.606115	1.23757	1.71462	2.73755	2.64369	3.3577	3.02392	2.38683	1.62029
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004947DNase_II
Vocabulary: Molecular Function
TermDefinition
GO:0004531deoxyribonuclease II activity
Vocabulary: Biological Process
TermDefinition
GO:0006259DNA metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0004531 deoxyribonuclease II activity
Blast
[Close]
BLAST of TCONS_00035821 vs. Swiss-Prot (Human)
Match: DNS2A (Deoxyribonuclease-2-alpha OS=Homo sapiens GN=DNASE2 PE=1 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 1.338e-54
Identity = 111/322 (34.47%), Postives = 164/322 (50.93%), Query Frame = 3 
Query:  249 LMFFSLWTVTDGAMPCIGKNGKPVDMYVLYKLPKIYWQDVPEYVKDGSAYAYLDNEDMEFTLSPTLITSPQSVAGLTLNQVYDAYENRATPSGQAHLFYNDANLDINDDSYNSKWGHTKGAMAFDQQIGFWMIHSVPHFPDFAKNG-YSYPSSGHKYGQMFFCMTLNSSAINDVGLQLRYNNPYVQDSFMPEEWNDKFPNIAALLKGEIIDSDPYYHIQDFISLGGMKLKSFAKGTKFNKDLYSTLVAPTLKINLLTETWQNGQGNLGSACNTSYTVEDVTNIKLDVPDGSYYAFRDTNDHSKYALSDTADNPYVCIGDINR 1211
            L+  +L  V  GA+ C G +G+PVD +V+YKLP +  +   E  + G  Y YLD     +     LI SP+   G +L  +Y     R+  S  A L YND     +    +S  GHTKG +  D   GFW++HSVP+FP  A +  YS+P S   YGQ   C++   +  + +G QL Y  P+V +  +   +  +FP++  ++KG  +  +P+       S  G   +SFAK +KF  DLYS  +A  L  NL  + W    G L S C+  + V +V  I    P G   +F  T DHSK+ +S     P+ C+GD+NR
Sbjct:    4 LLLAALLCVPAGALTCYGDSGQPVDWFVVYKLPAL--RGSGEAAQRGLQYKYLDESSGGWRDGRALINSPEGAVGRSLQPLY-----RSNTSQLAFLLYNDQPPQPSKAQDSSMRGHTKGVLLLDHDGGFWLVHSVPNFPPPASSAAYSWPHSACTYGQTLLCVSFPFAQFSKMGKQLTYTYPWVYNYQLEGIFAQEFPDLENVVKGHHVSQEPWNSSITLTSQAGAVFQSFAKFSKFGDDLYSGWLAAALGTNLQVQFWHKTVGILPSNCSDIWQVLNVNQIAFPGPAGP--SFNSTEDHSKWCVSP--KGPWTCVGDMNR 314
The following BLAST results are available for this feature:
BLAST of TCONS_00035821 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DNS2A1.338e-5434.47Deoxyribonuclease-2-alpha OS=Homo sapiens GN=DNASE... [more]
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