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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035811 ID=TCONS_00035811|Name=TCONS_00035811|organism=Clytia hemisphaerica|type=transcript|length=1606bp
TAATTAAGAGTTGTCATTAATTAAATAAGATCTTCAATCTAAAAGCAAAG
AGATATCATGAATTATACATTTACAAGTAAATCAATCTTAAACAAATAGA
CATCATAATATCATTAATTTGAAAGTATACCTAGTTGTGATCTGTGCGAC
ACCACCACGAATACCTTCCTCATTCTGTAGATGCATATCCTTATCTGTCA
ATAAATCCAACTCAACACCTGTCATCTTCAACGCAGCTTTCCAAGATAAC
CCAGGGGCAGTATAGAAATGGCATGGATCCAATTCGTAAAACTTCAAACA
CATTCTTCTGAACTCCTCAAACACGTCAGCCAACAACAAAGTATCTGTAA
GCAGATATAGATCATGGTAGTCCTTCAATGTCCTCATTccaaatcgattc
caaacaTTCTGGGCGTGCGTATAATCCTTGTCCTCAATATCCTCTTCCGT
CAAACTGCTAAAGAAACTCTCCTTCGGTGGCAAAACATCTTCATCAAAAC
GATCAACGCTGGAAATGTACTCGTATGGATAGACACCTTTCTTAGTCATC
AGATTCAATTTTTCGGTCAGCTGTAGAGAGAAtcgaagaaaaatatgaaa
atcaagAATATTCAACACTCCTATTAATCAGAGCAACTTTAAAAAGATCA
AAGATTATGGATTTCATATACTCAAAAACTAAATTCATGCATGGAATTCT
CTGATTAATAGGAATATTGCATATAATAAAGTATATATTGAATCAATAAG
AGCCAAAGAAAAAGAACTATCAATGAAAACTTATTAAATTATCTCAGAAC
TTTCAAAGAATATACCTCTTCCTCCTGTTCAGCATTCAAAGTAGGTTCAA
CATATGGGTTATTTCGATAATCTCCAACAGCATCCAACAGATCACCCAGG
TCATCACCATTCAATCCAAATTCGTCCACCTCCTCGACAGCATCGTCATT
GAAACCAAGCATCATTTCGTCCATACTATCATTTGGGATATAGCCAGCAT
CTTCCAACTCAATATCCATCATAAGTTCGTCCATACTATCATTTACATCC
ATAAAGTCATTATCGTAAAGTCTCTGTTGTTGTGGTGGGTCTTGAGTTTC
ATGATTACCAAGTTGATGGGCAAGATATCTGGTTATTTCGGGAAAATTCT
CTCTTTGGTTAGGTGAAgatttttgaaggtttttgGCAAGTTTATCGAGT
TTCGATGGCATAAATTGACACGAGTCAAAGAATTCGACGTTTCCAATGCT
AAATGATATGTAGGTTTCCATGTTGGTAGGGATTACGGTGATTTCGTCAT
GTCGCTTTTTCGCTGAAGATAAAATGAGATGAGAGTCGTAGCCTTTCAAG
TTATGGATGAAGATggggattttgattttttcatgatCGATCGAAAGTTG
AAGATTGCAAATGCTGTGAGCGCTGCCGCGGAATTTAGAAGTGATATGGC
AATGATCGAGGACCTTCTTTTTGTTTAAATAATCAGGGTGTTCGGTGTTC
GTAATGAAGGGTTTATCGCAGATGTAACATTTCATCGCCCGCTCGTGTTG
GattctttcttcttcacttACCACTGGagataatttgtttttgtaCATAC
TTCTGA Run BLAST on NCBI protein sequence of TCONS_00035811-protein >TCONS_00035811-protein ID=TCONS_00035811-protein|Name=TCONS_00035811-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
RSMYKNKLSPVVSEEERIQHERAMKCYICDKPFITNTEHPDYLNKKKVLD
HCHITSKFRGSAHSICNLQLSIDHEKIKIPIFIHNLKGYDSHLILSSAKK
RHDEITVIPTNMETYISFSIGNVEFFDSCQFMPSKLDKLAKNLQKSSPNQ
RENFPEITRYLAHQLGNHETQDPPQQQRLYDNDFMDVNDSMDELMMDIEL
EDAGYIPNDSMDEMMLGFNDDAVEEVDEFGLNGDDLGDLLDAVGDYRNNP
YVEPTLNAEQEEEVYSLKVLR Run BLAST on NCBI transcript from alignment at sc0001365:41450..43055 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035811 ID=TCONS_00035811|Name=TCONS_00035811|organism=Clytia hemisphaerica|type=transcript|length=1606bp|location=Sequence derived from alignment at sc0001365:41450..43055 (Clytia hemisphaerica)
TCAGAAGTATGtacaaaaacaaattatctCCAGTGGTaagtgaagaagaa
agaatCCAACACGAGCGGGCGATGAAATGTTACATCTGCGATAAACCCTT
CATTACGAACACCGAACACCCTGATTATTTAAACAAAAAGAAGGTCCTCG
ATCATTGCCATATCACTTCTAAATTCCGCGGCAGCGCTCACAGCATTTGC
AATCTTCAACTTTCGATCGatcatgaaaaaatcaaaatccccATCTTCAT
CCATAACTTGAAAGGCTACGACTCTCATCTCATTTTATCTTCAGCGAAAA
AGCGACATGACGAAATCACCGTAATCCCTACCAACATGGAAACCTACATA
TCATTTAGCATTGGAAACGTCGAATTCTTTGACTCGTGTCAATTTATGCC
ATCGAAACTCGATAAACTTGCcaaaaaccttcaaaaatcTTCACCTAACC
AAAGAGAGAATTTTCCCGAAATAACCAGATATCTTGCCCATCAACTTGGT
AATCATGAAACTCAAGACCCACCACAACAACAGAGACTTTACGATAATGA
CTTTATGGATGTAAATGATAGTATGGACGAACTTATGATGGATATTGAGT
TGGAAGATGCTGGCTATATCCCAAATGATAGTATGGACGAAATGATGCTT
GGTTTCAATGACGATGCTGTCGAGGAGGTGGACGAATTTGGATTGAATGG
TGATGACCTGGGTGATCTGTTGGATGCTGTTGGAGATTATCGAAATAACC
CATATGTTGAACCTACTTTGAATGCTGAACAGGAGGAAGAGGTATATTCT
TTGAAAGTTCTGAGATAATTTAATAAGTTTTCATTGATAGTTCTTTTTCT
TTGGCTCTTATTGATTCAATATATACTTTATTATATGCAATATTCCTATT
AATCAGAGAATTCCATGCATGAATTTAGTTTTTGAGTATATGAAATCCAT
AATCTTTGATCTTTTTAAAGTTGCTCTGATTAATAGGAGTGTTGAATATT
cttgattttcatatttttcttcgaTTCTCTCTACAGCTGACCGAAAAATT
GAATCTGATGACTAAGAAAGGTGTCTATCCATACGAGTACATTTCCAGCG
TTGATCGTTTTGATGAAGATGTTTTGCCACCGAAGGAGAGTTTCTTTAGC
AGTTTGACGGAAGAGGATATTGAGGACAAGGATTATACGCACGCCCAGAA
tgtttggaatcgatttggAATGAGGACATTGAAGGACTACCATGATCTAT
ATCTGCTTACAGATACTTTGTTGTTGGCTGACGTGTTTGAGGAGTTCAGA
AGAATGTGTTTGAAGTTTTACGAATTGGATCCATGCCATTTCTATACTGC
CCCTGGGTTATCTTGGAAAGCTGCGTTGAAGATGACAGGTGTTGAGTTGG
ATTTATTGACAGATAAGGATATGCATCTACAGAATGAGGAAGGTATTCGT
GGTGGTGTCGCACAGATCACAACTAGGTATACTTTCAAATTAATGATATT
ATGATGTCTATTTGTTTAAGATTGATTTACTTGTAAATGTATAATTCATG
ATATCTCTTTGCTTTTAGATTGAAGATCTTATTTAATTAATGACAACTCT
TAATTA Coding sequence (CDS) from alignment at sc0001365:41450..43055 >TCONS_00035811 ID=TCONS_00035811|Name=TCONS_00035811|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at sc0001365:41450..43055 (Clytia hemisphaerica)
AGAAGTATGtacaaaaacaaattatctCCAGTGGTaagtgaagaagaaag
aatCCAACACGAGCGGGCGATGAAATGTTACATCTGCGATAAACCCTTCA
TTACGAACACCGAACACCCTGATTATTTAAACAAAAAGAAGGTCCTCGAT
CATTGCCATATCACTTCTAAATTCCGCGGCAGCGCTCACAGCATTTGCAA
TCTTCAACTTTCGATCGatcatgaaaaaatcaaaatccccATCTTCATCC
ATAACTTGAAAGGCTACGACTCTCATCTCATTTTATCTTCAGCGAAAAAG
CGACATGACGAAATCACCGTAATCCCTACCAACATGGAAACCTACATATC
ATTTAGCATTGGAAACGTCGAATTCTTTGACTCGTGTCAATTTATGCCAT
CGAAACTCGATAAACTTGCcaaaaaccttcaaaaatcTTCACCTAACCAA
AGAGAGAATTTTCCCGAAATAACCAGATATCTTGCCCATCAACTTGGTAA
TCATGAAACTCAAGACCCACCACAACAACAGAGACTTTACGATAATGACT
TTATGGATGTAAATGATAGTATGGACGAACTTATGATGGATATTGAGTTG
GAAGATGCTGGCTATATCCCAAATGATAGTATGGACGAAATGATGCTTGG
TTTCAATGACGATGCTGTCGAGGAGGTGGACGAATTTGGATTGAATGGTG
ATGACCTGGGTGATCTGTTGGATGCTGTTGGAGATTATCGAAATAACCCA
TATGTTGAACCTACTTTGAATGCTGAACAGGAGGAAGAGGTATATTCTTT
GAAAGTTCTGAGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035811-exon-sc0001365-1491911889:41450..43055 | TCONS_00035811-exon-sc0001365-1491911889:41450..43055 | Clytia hemisphaerica | exon |
| TCONS_00035811-exon-sc0001365-1510915933:41450..43055 | TCONS_00035811-exon-sc0001365-1510915933:41450..43055 | Clytia hemisphaerica | exon |
| TCONS_00035811-exon-sc0001365-1575043694:41450..43055 | TCONS_00035811-exon-sc0001365-1575043694:41450..43055 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001365 | supercontig | sc0001365:41450..43055 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004868 | DNA-dir_DNA_pol_B_mt/vir |
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0008408 | 3'-5' exonuclease activity |
| GO:0003887 | DNA-directed DNA polymerase activity |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006260 | DNA replication |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006260 |
DNA replication |
| molecular_function |
GO:0008408 |
3'-5' exonuclease activity |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0003887 |
DNA-directed DNA polymerase activity |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0000166 |
nucleotide binding |
Blast
The following BLAST results are available for this feature:
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