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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035794 ID=TCONS_00035794|Name=TCONS_00035794|organism=Clytia hemisphaerica|type=transcript|length=305bp
TTCAAAGGCTTTGCAACAACAGTAATCCATGATGGACAAGATCCAGACAA
ATGGACATCCAAAGCTGTTGTGCCACCAATCTCAATGTCGACTACCTTCA
AACAAGCAGGCCCTGGTGAACACTCTGGTTATGAATACTCGAGAAGTGGA
AACCCAACCAGAGATTGCTTCGAAGCAACTCTTGCCAGTTTGGAGGGAGC
TAAATATGGTCTTGCATTTGCATCTGGTCTTGGAGCGACCACCATCTTGA
TGATGACGTTGAAAGCCGGTGATCACGTGGTCGTTTCTGATGACGTCTAC
GGAGG Run BLAST on NCBI protein sequence of TCONS_00035794-protein >TCONS_00035794-protein ID=TCONS_00035794-protein|Name=TCONS_00035794-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
FKGFATTVIHDGQDPDKWTSKAVVPPISMSTTFKQAGPGEHSGYEYSRSG
NPTRDCFEATLASLEGAKYGLAFASGLGATTILMMTLKAGDHVVVSDDVY
G Run BLAST on NCBI transcript from alignment at sc0001363:53186..54929- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035794 ID=TCONS_00035794|Name=TCONS_00035794|organism=Clytia hemisphaerica|type=transcript|length=1744bp|location=Sequence derived from alignment at sc0001363:53186..54929- (Clytia hemisphaerica)
TTCAAAGGCTTTGCAACAACAGTAATCCATGATGGACAAGATCCAGACAA
ATGGACATCCAAAGCTGTTGTGCCACCAATCTCAATGTCGACTACCTTCA
AACAAGCAGGCCCTGGTGAACACTCTGTAAGAATGACTTATTTTCCTATC
AAATTGTGAAAGTCTTCATTTTGTATTTTAGGGATTTTGAAATTTTTTTC
CTGAAATTTTAAAAGTTACTCTTAGGTGCCGCGCTTGTTAATTTTTCTTG
TTAATCTTTTTACCCCTTCATTATAAATTGTGTATCAGCTGTCACAAGAG
AAAAGTCCCTTATTTTGCTCTTAATAGCTTGGTTTTAGTCTATAATAACC
TTTTTTGGGGGAGGGGTATTAAGAGGTATCAAATTCTGCCATTCCAAATT
GTGAAAGATATTAAACAGGACCTTTTCTTAACAATTAAATTAAAAAATAT
TTCAATTTTCTTTTGTAGAGTTTTGTGTCTTACAACTTTTACCTCGAGAA
ACTTGTNAACCTTTTTTGGGGGAGGGGTATTAAGAGGTATCAAATTCTGC
CATTCCAAATTGTGAAAGATATTAAACAGGACCTTTTCTTAACAATTAAA
TTAAAAAATATTTCAATTTTCTTTTTTGTAGAGTTTTGTGTCTTACAACT
TTTACCTCGAGTAACTTGCAGTTTGAATCATAACGATGAAGACATTTTGA
ACCTTAGTATTTAAAAGATAACGTCTTGGAAACGTCTTTTTACTGTCAGC
CACTTGATGGATGGTGTCACTGGGAGTGTTTTAACAATAATTTACATTTT
TTTAATTCATCCTAGGGTTATGAATACTCGAGAAGTGGAAACCCAACCAG
AGATTGCTTCGAAGCAACTCTTGCCAGTTTGGAGGGAGCTAAATATGGTA
AGGACTTATCAGAATATCATATTTATTTTGCTTAATATTTATAGTGAATT
TTGTACATGTTTAACCTCCCTGGCTGCAGGGTAGGGGGGGGCTATAAGGT
TAAGCCTCAGCTGGCACCTGAGTTGGCCCGAGACCGGTGGAATGGCTTAC
CTAAAAACTGCGTTTGATCTATTATACCGATCTATTTCGAAAAAGTAATA
TACGCGTGAAAATGCATTTTATTCAATCTTTCCTATCTTTTNTGGCTTAC
CTAAAAACTGCGTTTGATCTATTATACCGACCGCCATTTATCTCGAAAAA
GTAATATACGCGTGAAAATGCATCTTTCCTATCTTTCTCTTACACCATAA
AAACCTGTCCATTGCAACTTTGTATAATAAAACATTTCCACGTATAATCT
GTTAGCAGTTTGCCTATCTACAATCAAGGTCATAATATTTGTCAAAAAAG
GGAAATTCCCCAGGAAGTTTTGAAACCACAGTCGATTTGTAAGTTTTAAC
GCGAGTATCCAAAAGTTCAAAAAAAGTCCAATAAGGCTCAGAATATAGCC
TTGAAGTCTGCCAACCCCTCCCAAATTGAAATATTCGATTAAATTAAAGA
GAAATCGACTTTCTCGCCGGAACTTTAAATCTTAAAAAAACGTTAAAATA
TCCGGAATTCTCAATATATTTCAACCATGATTGTAGTGTGTAAAAGAACA
TGATATCTGTAATTGTAACTTTTTATAAAACCTCCCAACTTCTTTAGGTC
TTGCATTTGCATCTGGTCTTGGAGCGACCACCATCTTGATGATGACGTTG
AAAGCCGGTGATCACGTGGTCGTTTCTGATGACGTCTACGGAGG Coding sequence (CDS) from alignment at sc0001363:53186..54929- >TCONS_00035794 ID=TCONS_00035794|Name=TCONS_00035794|organism=Clytia hemisphaerica|type=CDS|length=909bp|location=Sequence derived from alignment at sc0001363:53186..54929- (Clytia hemisphaerica)
GTCTTGCATTTGCATCTGGTCTTGGAGCGACCACCATCTTGATGATGACG
TTGAAAGCCGGTGATCACGTGGTCGTTTCTGATGACGTCTACGGAGGTTA
TGAATACTCGAGAAGTGGAAACCCAACCAGAGATTGCTTCGAAGCAACTC
TTGCCAGTTTGGAGGGAGCTAAATATGTTCAAAGGCTTTGCAACAACAGT
AATCCATGATGGACAAGATCCAGACAAATGGACATCCAAAGCTGTTGTGC
CACCAATCTCAATGTCGACTACCTTCAAACAAGCAGGCCCTGGTGAACAC
TCTGTCTTGCATTTGCATCTGGTCTTGGAGCGACCACCATCTTGATGATG
ACGTTGAAAGCCGGTGATCACGTGGTCGTTTCTGATGACGTCTACGGAGG
TTATGAATACTCGAGAAGTGGAAACCCAACCAGAGATTGCTTCGAAGCAA
CTCTTGCCAGTTTGGAGGGAGCTAAATATGTTCAAAGGCTTTGCAACAAC
AGTAATCCATGATGGACAAGATCCAGACAAATGGACATCCAAAGCTGTTG
TGCCACCAATCTCAATGTCGACTACCTTCAAACAAGCAGGCCCTGGTGAA
CACTCTGTCTTGCATTTGCATCTGGTCTTGGAGCGACCACCATCTTGATG
ATGACGTTGAAAGCCGGTGATCACGTGGTCGTTTCTGATGACGTCTACGG
AGGTTATGAATACTCGAGAAGTGGAAACCCAACCAGAGATTGCTTCGAAG
CAACTCTTGCCAGTTTGGAGGGAGCTAAATATGTTCAAAGGCTTTGCAAC
AACAGTAATCCATGATGGACAAGATCCAGACAAATGGACATCCAAAGCTG
TTGTGCCACCAATCTCAATGTCGACTACCTTCAAACAAGCAGGCCCTGGT
GAACACTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035794-exon-sc0001363-1575043694:54804..54929 | TCONS_00035794-exon-sc0001363-1575043694:54804..54929 | Clytia hemisphaerica | exon |
| TCONS_00035794-exon-sc0001363-1575043694:54033..54114 | TCONS_00035794-exon-sc0001363-1575043694:54033..54114 | Clytia hemisphaerica | exon |
| TCONS_00035794-exon-sc0001363-1575043694:53186..53282 | TCONS_00035794-exon-sc0001363-1575043694:53186..53282 | Clytia hemisphaerica | exon |
| TCONS_00035794-exon-sc0001363-1510915933:54804..54929 | TCONS_00035794-exon-sc0001363-1510915933:54804..54929 | Clytia hemisphaerica | exon |
| TCONS_00035794-exon-sc0001363-1510915933:54033..54114 | TCONS_00035794-exon-sc0001363-1510915933:54033..54114 | Clytia hemisphaerica | exon |
| TCONS_00035794-exon-sc0001363-1510915933:53186..53282 | TCONS_00035794-exon-sc0001363-1510915933:53186..53282 | Clytia hemisphaerica | exon |
| TCONS_00035794-exon-sc0001363-1491911889:54804..54929 | TCONS_00035794-exon-sc0001363-1491911889:54804..54929 | Clytia hemisphaerica | exon |
| TCONS_00035794-exon-sc0001363-1491911889:54033..54114 | TCONS_00035794-exon-sc0001363-1491911889:54033..54114 | Clytia hemisphaerica | exon |
| TCONS_00035794-exon-sc0001363-1491911889:53186..53282 | TCONS_00035794-exon-sc0001363-1491911889:53186..53282 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001363 | supercontig | sc0001363:53186..54929 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000277 | Cys/Met-Metab_PyrdxlP-dep_enz |
| IPR015421 | PyrdxlP-dep_Trfase_major_sub1 |
| IPR015424 | PyrdxlP-dep_Trfase |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0030170 | pyridoxal phosphate binding |
| GO:0003824 | catalytic activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0030170 |
pyridoxal phosphate binding |
Blast
BLAST of TCONS_00035794 vs. Swiss-Prot (Human)
Match: CGL (Cystathionine gamma-lyase OS=Homo sapiens GN=CTH PE=1 SV=3) HSP 1 Score: 153.68 bits (387), Expect = 1.304e-45 Identity = 68/101 (67.33%), Postives = 82/101 (81.19%), Query Frame = 1
Query: 1 FKGFATTVIHDGQDPDKWTSKAVVPPISMSTTFKQAGPGEHSGYEYSRSGNPTRDCFEATLASLEGAKYGLAFASGLGATTILMMTLKAGDHVVVSDDVYG 303
F+ FAT IH GQDP++WTS+AVVPPIS+STTFKQ PG+HSG+EYSRSGNPTR+C E +A+L+GAKY LAFASGL AT + LKAGD ++ DDVYG
Sbjct: 15 FQHFATQAIHVGQDPEQWTSRAVVPPISLSTTFKQGAPGQHSGFEYSRSGNPTRNCLEKAVAALDGAKYCLAFASGLAATVTITHLLKAGDQIICMDDVYG 115
The following BLAST results are available for this feature:
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