TCONS_00035793 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00035793
Unique Name	TCONS_00035793
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1033

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0001363:41436..45259-
coding sequence from alignment at sc0001363:41436..45259-

transcript sequence

>TCONS_00035793 ID=TCONS_00035793|Name=TCONS_00035793|organism=Clytia hemisphaerica|type=transcript|length=1033bp
TAGCATGTGGTGTTGTTCCCAGTCCTTTTGATTGTTACCTTGCCAACCGT
GGTGCTAAAACATTGAAAGTGCGCATGCTCCAACATCAAAAGAACGCAAT
GGCCGTTGCTAAGGCTTTAGAAGCTCATCCATTGGTTGAACGTGTTTATT
ACCCAGGATTGAAGAGCCATCCAGCTCATGAATTGGTCAAACGACAATGC
ACTGGCTTCAGTGGTATGGTTTCCATGGTCATCAAAGGAAATTTGGAAAC
CGCTTCCAATTTCATGAAAGCATTAAAGGTGTTCACTTTGGCCGAAAGTT
TGGGAGGATTTGAGAGCTTAATCGAGCACCCCGCTATTATGACCCACGCT
TCAGTTCCAGAAGATCAACGAACAAAACTCGGAATTACTGATACTTTCtt
GAGAATGTCAGTTGGGCTAGAAGAAGCAGAAGACCTCGTCGCTGATATTG
AACAAGCTTTAGCTGCTGCAAACTCTGAAGATCCCCCAAGCAAACGACAA
AAGATTGCATAAACAAAACACGCACACACACTTCTTATAATAAACAGAAT
TAATTTTGGGTGACGGTATGTAATTTTTTTGGTgttgacgaaaaaaaatg
actgaattttatttataaaatggACATgtctaattttattttttagaaaa
agaaaaatctattttattttgttatttatatCAGCAAttaaaaatcaacc
aaaaatatTGTAGGTATTTTTCAGTTGATgatttgttttttatgaaagta
agtttgaaaaattcgGTTTCAggtttatgttttaaaatttgcTTTTTGAG
GGACATCTTTTACTATTGAAGGATTATTTTccctgttttttttatttcta
aattcTCCTTTTCAATTTAGAAACCTTTCACACTTAAGAACCATGATACT
AATTTTTAGGGATTTCTAGATTTTTAAAGaataataaaattgataaaaat
tgaaagaTAAAGATCTAATAGTGACATTgcaaaaaaagtctttttttctg
tTTGAAATCATCcccatttaatttttttttctt

Run BLAST on NCBI

protein sequence of TCONS_00035793-protein

>TCONS_00035793-protein ID=TCONS_00035793-protein|Name=TCONS_00035793-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
ACGVVPSPFDCYLANRGAKTLKVRMLQHQKNAMAVAKALEAHPLVERVYY
PGLKSHPAHELVKRQCTGFSGMVSMVIKGNLETASNFMKALKVFTLAESL
GGFESLIEHPAIMTHASVPEDQRTKLGITDTFLRMSVGLEEAEDLVADIE
QALAAANSEDPPSKRQKIA

Run BLAST on NCBI

transcript from alignment at sc0001363:41436..45259-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00035793 ID=TCONS_00035793|Name=TCONS_00035793|organism=Clytia hemisphaerica|type=transcript|length=3824bp|location=Sequence derived from alignment at sc0001363:41436..45259- (Clytia hemisphaerica)
TAGCATGTGGTGTTGTTCCCAGTCCTTTTGATTGTTACCTTGCCAACCGT
GGTGCTAAAACATTGAAAGTGCGCATGCTCCAACATCAAAAGAACGCAAT
GGCCGTTGCTAAGGCTTTAGAAGCTCATCCATTGGTTGAACGTGTTTATT
ACCCAGGTTTGTAAAATTTATGCATTAAACATTTTTCTATTTCTGTAGAC
CAATCATTACAAGCGATTTTAACAAATAAGATGGAACGTTCCAGCAAAAA
GAACGATACTGAACGTTCTAAGATGTTCAGGTGCGTTAGAGGACGTCCTT
GAACGGATCCCCAAATTGACGCTTCTTCCTGGAGGAAACTAGTTTTCGCG
TTTTTTTGGTTTGAAGAAAAATCTAAACCTTCCAAATGTTAAAAGTTTTC
TCGATCTTATTCAGAAATTTAGCGAGTCAGAATAAAAAATTCTCCATCTA
GTACTAAATAAACTCTTGCACCGCAAAATAGGTTACGCGAAAAGAAATTC
CGCGAAAATAAGTTGTTCCCTTATTAGTATAACAAAATGAATACCTTGCC
TTTTCTTTAGGATTGAAGAGCCATCCAGCTCATGAATTGGTCAAACGACA
ATGCACTGGCTTCAGTGGTATGGTTTCCATGGTCATCAAAGGAAATTTGG
AAACCGCTTCCAATTTCATGAAAGCATTAAAGGTATGAAGAAAGGGTTAA
ATAATCTCCAGGCCAAAAGATTTATTTATGATTTACGAATCATTCTGATT
TTGTGCTATTTTCAAAGTTTTGAGCTCCCCTAAAGGCCTATAATTTCACG
AAATGATATTTTACTATGAGTCTATCAAAATTTTCTAGATACAGTTTGGT
TAGTAAATAGACTGATGAAACGCCATTGCGAACTTTCACTCGATGAATCT
TTTGAAAATAGTTTCCTTTAGGAAATCGTTTGACCTTTGGTTTACTTTGA
TGGTATAAAATTTCGAAGCTGCGAAATGTTATACCATTAAAGTATGATAC
ATAGGGAATTTTTCAATCCTCCCATTTTTACGTAACGATTGAAATCCTCA
AACATTTTCTAGTACAATTATGTGGGTTTAGTGACTGTAGACCTTAACCT
TTTAGATTTTTTTCAATATTTTGTTCACCTATATTTCAGGTGTTCACTTT
GGCCGAAAGTTTGGGAGGATTTGAGAGCTTAATCGAGCACCCGTAAGTAA
AGTGTCAATTTCTCCCAAGAATCACCTATCTTTAATTTTCACTCTATTAC
GAAGACTAACTATGCTCCATTCCAATTATATCCCTTGCCTTTTTGTAACA
CTTAACAAAATACAATCTACGCGATACTTAATAACTCTTAGTAAATTTCG
TGGTTACACATTTTTTTCAAAAGGATACTAGCCAGTTTTGGCTGAAGAAT
AGCTGTTCTTTTTTTTCGTAATTTCTAGGCTTAAAGGTTCTTAAAATGTT
TTTAATAAGCTTACTATATTGATTTATTGAGACTTGAAAAAGCTTTCTTA
GCGATTGCTAAATCTTTGTTCTTCGAATTTGAGCCTCATGATGTTCTTAT
AAAATCGTACCCATAGAATTGTTTTTATAAAATAGCGTGTAATTACAGGT
ATCTATATAATAATAGCCGTACGTGTCTGAATCCCTTTTTGCAGCGCTTT
TGTTTTCGATAGCGGTTTTAGCTTGGGACGTCACAAAATTAATTGCAAAA
TAGAGAAAAAAACAGGATTTCGTCAGTCATCATGTACATTCTACGATAAA
AGATAATAAGCAACGGATTTGAAGGCCCTAAATGTGAAACTGATAATTTT
GCATCGAAGGATAAAGTTAACTTCACACCTGAGATGGCTATTTTTATAGT
GACAAAGTCTTCTTTGACGACGTCTGGGACCGCTATTTAACAAAATGAGT
TGATTTTTCTTCTAGCGCTATTATGACCCACGCTTCAGTTCCAGAAGATC
AACGAACAAAACTCGGAATTACTGATACTTTCGTATGTTAATTTTTCCAT
TTCTTTTATTTAAAATATCTCACTCTAAAGGAGCTAAGATTTTTTGGGTT
AGATTTCCTTGTTATTCATTGCAAGGTCACACGTTTTTAACTTTCTGTTC
ATACTGCAGTATAATTTTATTCATTCGTTTTCAAGAAATATAAATCAGAT
TTTCATGACTTTCATGGTAAATTCCGTTGAAAAGGAACTTAAAGGTTTGT
ATAGTTTAAACACAACCTCGTCACCGTGTATCCCAGGCTTTATTTATGTT
ACTGATGGACGTGTGTAGCGCTAACAGTAAGCATAAAAAGCTGATACTAC
GCAGGGGACGAGGTTGGTTTAAACATAGATGTTGTTACGCAAATTTATTC
ATTCTTTTTTTAAGTTGAGAATGTCAGTTGGGCTAGAAGAAGCAGAAGAC
CTCGTCGCTGATATTGAACAAGCTTTAGCTGCTGCAAACGTAAGTGTTAA
ATCGTCTCCTTAATTGTTCTCTTCAGGTTAAGGCCATGTTTACACGTTAC
TTTTCCGTCTCGCTCTGAAACGAAATGAAACCATCCTATTGGTTAAATTC
AATTGTCATTTCTAACCAATAGAATGGCTTTATTTCGTTTCTGAGTGGAA
CGGAGCCGTTGTCTGCCAACATGGTCTAATTAACTTAAAGTCACTATACG
AATACGAATACGTCAGTGTTCGGTACAATTGACGCTTTCTAATTTGATTT
TCAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
TCCCCCCCCCCCCCCCCCAATACATTGAACGTATGTAGACGCAAATCAAG
TTATAAGCTATCAAGTTTGAACAGAAGAAAACCATACGATTCTTGCTTAA
TTATTTACTCATTCATTAACTCGTTCATTCATCCATTCATTCATTCATTC
ATTCATTCATCCATTCAGTCTGAAGATCCCCCAAGCAAACGACAAAAGAT
TGCATAAACAAAACACGCACACACACTTCTTATAATAAACAGGTACTCTC
CCTCCCACCCTGACTGTCACTCCTTTTAGTAGGTCACAGAAAAATGAGAA
AATGAGAAAATATACATGAGAGAGATATACATTTTTTGTCATTTCCAGTC
AATGTTGAAGCCAATTTTTCAAAAAAAGTCCTAATCTTTTTTTTACGTAA
AAATGAATTTGAGGATTCTCTTTAAAAAAAGATTGAAAACTCGAAGAGCT
GTTACAATCTGCTCTCTTCTTTCGCAGAGGGGGGACTGAAAAAATATGTT
GTAGTTTAATTTTTTTCTTTTTTTCTTATCATTCTCAGAATTAATTTTGG
GTGACGGTATGTAATTTTTTTGGTGTTGACGAAAAAAAATGACTGAATTT
TATTTATAAAATGGACATGTCTAATTTTATTTTTTAGAAAAAGAAAAATC
TATTTTATTTTGTTATTTATATCAGCAATTAAAAATCAACCAAAAATATT
GTAGGTATTTTTCAGTTGATGATTTGTTTTTTATGAAAGTAAGTTTGAAA
AATTCGGTTTCAGGTTTATGTTTTAAAATTTGCTTTTTGAGGGACATCTT
TTACTATTGAAGGATTATTTTCCCTGTTTTTTTTATTTCTAAATTCTCCT
TTTCAATTTAGAAACCTTTCACACTTAAGAACCATGATACTAATTTTTAG
GGATTTCTAGATTTTTAAAGAATAATAAAATTGATAAAAATTGAAAGATA
AAGATCTAATAGTGACATTGCAAAAAAAGTCTTTTTTTCTGTTTGAAATC
ATCCCCATTTAATTTTTTTTTCTT

Coding sequence (CDS) from alignment at sc0001363:41436..45259-

>TCONS_00035793 ID=TCONS_00035793|Name=TCONS_00035793|organism=Clytia hemisphaerica|type=CDS|length=3060bp|location=Sequence derived from alignment at sc0001363:41436..45259- (Clytia hemisphaerica)
TCTGAAGATCCCCCAAGCAAACGACAAAAGATTGCATAATTGAGAATGTC
AGTTGGGCTAGAAGAAGCAGAAGACCTCGTCGCTGATATTGAACAAGCTT
TAGCTGCTGCAAACCGCTATTATGACCCACGCTTCAGTTCCAGAAGATCA
ACGAACAAAACTCGGAATTACTGATACTTTCGTGTTCACTTTGGCCGAAA
GTTTGGGAGGATTTGAGAGCTTAATCGAGCACCCGATTGAAGAGCCATCC
AGCTCATGAATTGGTCAAACGACAATGCACTGGCTTCAGTGGTATGGTTT
CCATGGTCATCAAAGGAAATTTGGAAACCGCTTCCAATTTCATGAAAGCA
TTAAAGGCATGTGGTGTTGTTCCCAGTCCTTTTGATTGTTACCTTGCCAA
CCGTGGTGCTAAAACATTGAAAGTGCGCATGCTCCAACATCAAAAGAACG
CAATGGCCGTTGCTAAGGCTTTAGAAGCTCATCCATTGGTTGAACGTGTT
TATTACCCAGTCTGAAGATCCCCCAAGCAAACGACAAAAGATTGCATAAT
TGAGAATGTCAGTTGGGCTAGAAGAAGCAGAAGACCTCGTCGCTGATATT
GAACAAGCTTTAGCTGCTGCAAACCGCTATTATGACCCACGCTTCAGTTC
CAGAAGATCAACGAACAAAACTCGGAATTACTGATACTTTCGTGTTCACT
TTGGCCGAAAGTTTGGGAGGATTTGAGAGCTTAATCGAGCACCCGATTGA
AGAGCCATCCAGCTCATGAATTGGTCAAACGACAATGCACTGGCTTCAGT
GGTATGGTTTCCATGGTCATCAAAGGAAATTTGGAAACCGCTTCCAATTT
CATGAAAGCATTAAAGGCATGTGGTGTTGTTCCCAGTCCTTTTGATTGTT
ACCTTGCCAACCGTGGTGCTAAAACATTGAAAGTGCGCATGCTCCAACAT
CAAAAGAACGCAATGGCCGTTGCTAAGGCTTTAGAAGCTCATCCATTGGT
TGAACGTGTTTATTACCCAGTCTGAAGATCCCCCAAGCAAACGACAAAAG
ATTGCATAATTGAGAATGTCAGTTGGGCTAGAAGAAGCAGAAGACCTCGT
CGCTGATATTGAACAAGCTTTAGCTGCTGCAAACCGCTATTATGACCCAC
GCTTCAGTTCCAGAAGATCAACGAACAAAACTCGGAATTACTGATACTTT
CGTGTTCACTTTGGCCGAAAGTTTGGGAGGATTTGAGAGCTTAATCGAGC
ACCCGATTGAAGAGCCATCCAGCTCATGAATTGGTCAAACGACAATGCAC
TGGCTTCAGTGGTATGGTTTCCATGGTCATCAAAGGAAATTTGGAAACCG
CTTCCAATTTCATGAAAGCATTAAAGGCATGTGGTGTTGTTCCCAGTCCT
TTTGATTGTTACCTTGCCAACCGTGGTGCTAAAACATTGAAAGTGCGCAT
GCTCCAACATCAAAAGAACGCAATGGCCGTTGCTAAGGCTTTAGAAGCTC
ATCCATTGGTTGAACGTGTTTATTACCCAGTCTGAAGATCCCCCAAGCAA
ACGACAAAAGATTGCATAATTGAGAATGTCAGTTGGGCTAGAAGAAGCAG
AAGACCTCGTCGCTGATATTGAACAAGCTTTAGCTGCTGCAAACCGCTAT
TATGACCCACGCTTCAGTTCCAGAAGATCAACGAACAAAACTCGGAATTA
CTGATACTTTCGTGTTCACTTTGGCCGAAAGTTTGGGAGGATTTGAGAGC
TTAATCGAGCACCCGATTGAAGAGCCATCCAGCTCATGAATTGGTCAAAC
GACAATGCACTGGCTTCAGTGGTATGGTTTCCATGGTCATCAAAGGAAAT
TTGGAAACCGCTTCCAATTTCATGAAAGCATTAAAGGCATGTGGTGTTGT
TCCCAGTCCTTTTGATTGTTACCTTGCCAACCGTGGTGCTAAAACATTGA
AAGTGCGCATGCTCCAACATCAAAAGAACGCAATGGCCGTTGCTAAGGCT
TTAGAAGCTCATCCATTGGTTGAACGTGTTTATTACCCAGTCTGAAGATC
CCCCAAGCAAACGACAAAAGATTGCATAATTGAGAATGTCAGTTGGGCTA
GAAGAAGCAGAAGACCTCGTCGCTGATATTGAACAAGCTTTAGCTGCTGC
AAACCGCTATTATGACCCACGCTTCAGTTCCAGAAGATCAACGAACAAAA
CTCGGAATTACTGATACTTTCGTGTTCACTTTGGCCGAAAGTTTGGGAGG
ATTTGAGAGCTTAATCGAGCACCCGATTGAAGAGCCATCCAGCTCATGAA
TTGGTCAAACGACAATGCACTGGCTTCAGTGGTATGGTTTCCATGGTCAT
CAAAGGAAATTTGGAAACCGCTTCCAATTTCATGAAAGCATTAAAGGCAT
GTGGTGTTGTTCCCAGTCCTTTTGATTGTTACCTTGCCAACCGTGGTGCT
AAAACATTGAAAGTGCGCATGCTCCAACATCAAAAGAACGCAATGGCCGT
TGCTAAGGCTTTAGAAGCTCATCCATTGGTTGAACGTGTTTATTACCCAG
TCTGAAGATCCCCCAAGCAAACGACAAAAGATTGCATAATTGAGAATGTC
AGTTGGGCTAGAAGAAGCAGAAGACCTCGTCGCTGATATTGAACAAGCTT
TAGCTGCTGCAAACCGCTATTATGACCCACGCTTCAGTTCCAGAAGATCA
ACGAACAAAACTCGGAATTACTGATACTTTCGTGTTCACTTTGGCCGAAA
GTTTGGGAGGATTTGAGAGCTTAATCGAGCACCCGATTGAAGAGCCATCC
AGCTCATGAATTGGTCAAACGACAATGCACTGGCTTCAGTGGTATGGTTT
CCATGGTCATCAAAGGAAATTTGGAAACCGCTTCCAATTTCATGAAAGCA
TTAAAGGCATGTGGTGTTGTTCCCAGTCCTTTTGATTGTTACCTTGCCAA
CCGTGGTGCTAAAACATTGAAAGTGCGCATGCTCCAACATCAAAAGAACG
CAATGGCCGTTGCTAAGGCTTTAGAAGCTCATCCATTGGTTGAACGTGTT
TATTACCCAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_021002	XLOC_021002	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00035793-protein	TCONS_00035793-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001363	supercontig	sc0001363:41436..45259 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.2626	10.108	18.9982	18.6821	11.9936	13.58	53.6153	61.7417	248.227	160.013	144.684	246.396	206.904	212.398	172.36	146.204	41.1376	44.49	40.4492	37.0772	15.8603	22.2554	5.53657	10.1521	3.77807	14.1005	17.5972	24.5242	1.65264	1.85759

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000277	Cys/Met-Metab_PyrdxlP-dep_enz
IPR015422	PyrdxlP-dep_Trfase_sub2
IPR015424	PyrdxlP-dep_Trfase

Vocabulary: **Molecular Function**
Term	Definition
GO:0030170	pyridoxal phosphate binding
GO:0003824	catalytic activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0030170	pyridoxal phosphate binding

Blast

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BLAST of TCONS_00035793 vs. Swiss-Prot (Human)
Match: CGL (Cystathionine gamma-lyase OS=Homo sapiens GN=CTH PE=1 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 4.354e-59
Identity = 107/161 (66.46%), Postives = 127/161 (78.88%), Query Frame = 3

Query:    9 GVVPSPFDCYLANRGAKTLKVRMLQHQKNAMAVAKALEAHPLVERVYYPGLKSHPAHELVKRQCTGFSGMVSMVIKGNLETASNFMKALKVFTLAESLGGFESLIEHPAIMTHASVPEDQRTKLGITDTFLRMSVGLEEAEDLVADIEQALAAANSEDPPS 491
            G VPSP DCYL NRG KTL VRM +H KN MAVA+ LE++P VE+V YPGL SHP HELVKRQCTG +GMV+  IKG L+ A  F+K LK+FTLAESLGGFESL E PAIMTHASV ++ R  LGI+DT +R+SVGLE+ EDL+ D++QAL AA+   PPS
Sbjct:  244 GAVPSPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAH---PPS 401

The following BLAST results are available for this feature:

BLAST of TCONS_00035793 vs. Swiss-Prot (Human)

BLAST of TCONS_00035793 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CGL	4.354e-59	66.46	Cystathionine gamma-lyase OS=Homo sapiens GN=CTH P...	[more]

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TCONS_00035793 (transcript) - C. hemisphaerica