TCONS_00035792 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00035792
Unique Name	TCONS_00035792
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	959

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0001363:41436..45259-

transcript sequence

>TCONS_00035792 ID=TCONS_00035792|Name=TCONS_00035792|organism=Clytia hemisphaerica|type=transcript|length=959bp
TAGCATGTGGTGTTGTTCCCAGTCCTTTTGATTGTTACCTTGCCAACCGT
GGTGCTAAAACATTGAAAGTGCGCATGCTCCAACATCAAAAGAACGCAAT
GGCCGTTGCTAAGGCTTTAGAAGCTCATCCATTGGTTGAACGTGTTTATT
ACCCAGGATTGAAGAGCCATCCAGCTCATGAATTGGTCAAACGACAATGC
ACTGGCTTCAGTGGTATGGTTTCCATGGTCATCAAAGGAAATTTGGAAAC
CGCTTCCAATTTCATGAAAGCATTAAAGGTGTTCACTTTGGCCGAAAGTT
TGGGAGGATTTGAGAGCTTAATCGAGCACCCCGCTATTATGACCCACGCT
TCAGTTCCAGAAGATCAACGAACAAAACTCGGAATTACTGATACTTTCtt
GAGAATGTCAGTTGGGCTAGAAGAAGCAGAAGACCTCGTCGCTGATATTG
AACAAGCTTTAGCTGCTGCAAACAATTAATTTTGGGTGACGGTATGTAAT
TTTTTTGGTgttgacgaaaaaaaatgactgaattttatttataaaatggA
CATgtctaattttattttttagaaaaagaaaaatctattttattttgtta
tttatatCAGCAAttaaaaatcaaccaaaaatatTGTAGGTATTTTTCAG
TTGATgatttgttttttatgaaagtaagtttgaaaaattcgGTTTCAggt
ttatgttttaaaatttgcTTTTTGAGGGACATCTTTTACTATTGAAGGAT
TATTTTccctgttttttttatttctaaattcTCCTTTTCAATTTAGAAAC
CTTTCACACTTAAGAACCATGATACTAATTTTTAGGGATTTCTAGATTTT
TAAAGaataataaaattgataaaaattgaaagaTAAAGATCTAATAGTGA
CATTgcaaaaaaagtctttttttctgtTTGAAATCATCcccatttaattt
ttttttctt

Run BLAST on NCBI

transcript from alignment at sc0001363:41436..45259-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00035792 ID=TCONS_00035792|Name=TCONS_00035792|organism=Clytia hemisphaerica|type=transcript|length=3824bp|location=Sequence derived from alignment at sc0001363:41436..45259- (Clytia hemisphaerica)
TAGCATGTGGTGTTGTTCCCAGTCCTTTTGATTGTTACCTTGCCAACCGT
GGTGCTAAAACATTGAAAGTGCGCATGCTCCAACATCAAAAGAACGCAAT
GGCCGTTGCTAAGGCTTTAGAAGCTCATCCATTGGTTGAACGTGTTTATT
ACCCAGGTTTGTAAAATTTATGCATTAAACATTTTTCTATTTCTGTAGAC
CAATCATTACAAGCGATTTTAACAAATAAGATGGAACGTTCCAGCAAAAA
GAACGATACTGAACGTTCTAAGATGTTCAGGTGCGTTAGAGGACGTCCTT
GAACGGATCCCCAAATTGACGCTTCTTCCTGGAGGAAACTAGTTTTCGCG
TTTTTTTGGTTTGAAGAAAAATCTAAACCTTCCAAATGTTAAAAGTTTTC
TCGATCTTATTCAGAAATTTAGCGAGTCAGAATAAAAAATTCTCCATCTA
GTACTAAATAAACTCTTGCACCGCAAAATAGGTTACGCGAAAAGAAATTC
CGCGAAAATAAGTTGTTCCCTTATTAGTATAACAAAATGAATACCTTGCC
TTTTCTTTAGGATTGAAGAGCCATCCAGCTCATGAATTGGTCAAACGACA
ATGCACTGGCTTCAGTGGTATGGTTTCCATGGTCATCAAAGGAAATTTGG
AAACCGCTTCCAATTTCATGAAAGCATTAAAGGTATGAAGAAAGGGTTAA
ATAATCTCCAGGCCAAAAGATTTATTTATGATTTACGAATCATTCTGATT
TTGTGCTATTTTCAAAGTTTTGAGCTCCCCTAAAGGCCTATAATTTCACG
AAATGATATTTTACTATGAGTCTATCAAAATTTTCTAGATACAGTTTGGT
TAGTAAATAGACTGATGAAACGCCATTGCGAACTTTCACTCGATGAATCT
TTTGAAAATAGTTTCCTTTAGGAAATCGTTTGACCTTTGGTTTACTTTGA
TGGTATAAAATTTCGAAGCTGCGAAATGTTATACCATTAAAGTATGATAC
ATAGGGAATTTTTCAATCCTCCCATTTTTACGTAACGATTGAAATCCTCA
AACATTTTCTAGTACAATTATGTGGGTTTAGTGACTGTAGACCTTAACCT
TTTAGATTTTTTTCAATATTTTGTTCACCTATATTTCAGGTGTTCACTTT
GGCCGAAAGTTTGGGAGGATTTGAGAGCTTAATCGAGCACCCGTAAGTAA
AGTGTCAATTTCTCCCAAGAATCACCTATCTTTAATTTTCACTCTATTAC
GAAGACTAACTATGCTCCATTCCAATTATATCCCTTGCCTTTTTGTAACA
CTTAACAAAATACAATCTACGCGATACTTAATAACTCTTAGTAAATTTCG
TGGTTACACATTTTTTTCAAAAGGATACTAGCCAGTTTTGGCTGAAGAAT
AGCTGTTCTTTTTTTTCGTAATTTCTAGGCTTAAAGGTTCTTAAAATGTT
TTTAATAAGCTTACTATATTGATTTATTGAGACTTGAAAAAGCTTTCTTA
GCGATTGCTAAATCTTTGTTCTTCGAATTTGAGCCTCATGATGTTCTTAT
AAAATCGTACCCATAGAATTGTTTTTATAAAATAGCGTGTAATTACAGGT
ATCTATATAATAATAGCCGTACGTGTCTGAATCCCTTTTTGCAGCGCTTT
TGTTTTCGATAGCGGTTTTAGCTTGGGACGTCACAAAATTAATTGCAAAA
TAGAGAAAAAAACAGGATTTCGTCAGTCATCATGTACATTCTACGATAAA
AGATAATAAGCAACGGATTTGAAGGCCCTAAATGTGAAACTGATAATTTT
GCATCGAAGGATAAAGTTAACTTCACACCTGAGATGGCTATTTTTATAGT
GACAAAGTCTTCTTTGACGACGTCTGGGACCGCTATTTAACAAAATGAGT
TGATTTTTCTTCTAGCGCTATTATGACCCACGCTTCAGTTCCAGAAGATC
AACGAACAAAACTCGGAATTACTGATACTTTCGTATGTTAATTTTTCCAT
TTCTTTTATTTAAAATATCTCACTCTAAAGGAGCTAAGATTTTTTGGGTT
AGATTTCCTTGTTATTCATTGCAAGGTCACACGTTTTTAACTTTCTGTTC
ATACTGCAGTATAATTTTATTCATTCGTTTTCAAGAAATATAAATCAGAT
TTTCATGACTTTCATGGTAAATTCCGTTGAAAAGGAACTTAAAGGTTTGT
ATAGTTTAAACACAACCTCGTCACCGTGTATCCCAGGCTTTATTTATGTT
ACTGATGGACGTGTGTAGCGCTAACAGTAAGCATAAAAAGCTGATACTAC
GCAGGGGACGAGGTTGGTTTAAACATAGATGTTGTTACGCAAATTTATTC
ATTCTTTTTTTAAGTTGAGAATGTCAGTTGGGCTAGAAGAAGCAGAAGAC
CTCGTCGCTGATATTGAACAAGCTTTAGCTGCTGCAAACGTAAGTGTTAA
ATCGTCTCCTTAATTGTTCTCTTCAGGTTAAGGCCATGTTTACACGTTAC
TTTTCCGTCTCGCTCTGAAACGAAATGAAACCATCCTATTGGTTAAATTC
AATTGTCATTTCTAACCAATAGAATGGCTTTATTTCGTTTCTGAGTGGAA
CGGAGCCGTTGTCTGCCAACATGGTCTAATTAACTTAAAGTCACTATACG
AATACGAATACGTCAGTGTTCGGTACAATTGACGCTTTCTAATTTGATTT
TCAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
TCCCCCCCCCCCCCCCCCAATACATTGAACGTATGTAGACGCAAATCAAG
TTATAAGCTATCAAGTTTGAACAGAAGAAAACCATACGATTCTTGCTTAA
TTATTTACTCATTCATTAACTCGTTCATTCATCCATTCATTCATTCATTC
ATTCATTCATCCATTCAGTCTGAAGATCCCCCAAGCAAACGACAAAAGAT
TGCATAAACAAAACACGCACACACACTTCTTATAATAAACAGGTACTCTC
CCTCCCACCCTGACTGTCACTCCTTTTAGTAGGTCACAGAAAAATGAGAA
AATGAGAAAATATACATGAGAGAGATATACATTTTTTGTCATTTCCAGTC
AATGTTGAAGCCAATTTTTCAAAAAAAGTCCTAATCTTTTTTTTACGTAA
AAATGAATTTGAGGATTCTCTTTAAAAAAAGATTGAAAACTCGAAGAGCT
GTTACAATCTGCTCTCTTCTTTCGCAGAGGGGGGACTGAAAAAATATGTT
GTAGTTTAATTTTTTTCTTTTTTTCTTATCATTCTCAGAATTAATTTTGG
GTGACGGTATGTAATTTTTTTGGTGTTGACGAAAAAAAATGACTGAATTT
TATTTATAAAATGGACATGTCTAATTTTATTTTTTAGAAAAAGAAAAATC
TATTTTATTTTGTTATTTATATCAGCAATTAAAAATCAACCAAAAATATT
GTAGGTATTTTTCAGTTGATGATTTGTTTTTTATGAAAGTAAGTTTGAAA
AATTCGGTTTCAGGTTTATGTTTTAAAATTTGCTTTTTGAGGGACATCTT
TTACTATTGAAGGATTATTTTCCCTGTTTTTTTTATTTCTAAATTCTCCT
TTTCAATTTAGAAACCTTTCACACTTAAGAACCATGATACTAATTTTTAG
GGATTTCTAGATTTTTAAAGAATAATAAAATTGATAAAAATTGAAAGATA
AAGATCTAATAGTGACATTGCAAAAAAAGTCTTTTTTTCTGTTTGAAATC
ATCCCCATTTAATTTTTTTTTCTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_021002	XLOC_021002	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001363	supercontig	sc0001363:41436..45259 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
156.224	151.872	188.395	197.27	7.23809	2.76741	13.3021	13.3974	53.8211	38.385	58.563	57.0616	7.04608	2.81369	2.24365	3.54622	155.078	162.356	0.456875	0	245.024	242.82	104.42	109.229	90.5994	127.33	194.398	199.036	39.5521	42.7125

Blast

[Close]

BLAST of TCONS_00035792 vs. Swiss-Prot (Human)
Match: CGL (Cystathionine gamma-lyase OS=Homo sapiens GN=CTH PE=1 SV=3)

HSP 1 Score: 196.823 bits (499), Expect = 1.204e-58
Identity = 104/155 (67.10%), Postives = 124/155 (80.00%), Query Frame = 3

Query:    9 GVVPSPFDCYLANRGAKTLKVRMLQHQKNAMAVAKALEAHPLVERVYYPGLKSHPAHELVKRQCTGFSGMVSMVIKGNLETASNFMKALKVFTLAESLGGFESLIEHPAIMTHASVPEDQRTKLGITDTFLRMSVGLEEAEDLVADIEQALAAAN 473
            G VPSP DCYL NRG KTL VRM +H KN MAVA+ LE++P VE+V YPGL SHP HELVKRQCTG +GMV+  IKG L+ A  F+K LK+FTLAESLGGFESL E PAIMTHASV ++ R  LGI+DT +R+SVGLE+ EDL+ D++QAL AA+
Sbjct:  244 GAVPSPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAH 398

The following BLAST results are available for this feature:

BLAST of TCONS_00035792 vs. Swiss-Prot (Human)

BLAST of TCONS_00035792 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CGL	1.204e-58	67.10	Cystathionine gamma-lyase OS=Homo sapiens GN=CTH P...	[more]

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TCONS_00035792 (transcript) - C. hemisphaerica