TCONS_00035786 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035786
Unique NameTCONS_00035786
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length713

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035786 ID=TCONS_00035786|Name=TCONS_00035786|organism=Clytia hemisphaerica|type=transcript|length=713bp
TTCAGCTTTCGTAGTATATATACTGGTACTAAAGTGTCTTCCCTCCCCCT
CCCCCATTGTTGAGCTCTGATTTGCTCCTGCAGCTTATCAACAATGAGGA
GGGGAAGAAGGGAAGGAGCCAGTGGTAGTTCATAGAAGAAAATTCCAATA
TTTATGGCCAGGATTGTACGAATGATATTGTCAAGCAGACTGGGGTTGTT
GACTGTGGTGTTCACGTTTGTGTAAACATCTACAACCTGGTATTTGACAA
GTCACTGAAGTTTGGGAATGATAGCTACGATGCAAGATATTTCATCGGCT
GCAAAATACTTGAATCAAGAAGCAGACGTAATGTTGTCAGACAAAACAAG
ACCACAAGTGAAACAAAACGAATTATTGTAGATCCCGATATCGTCAACAT
GTCTGACATTCATTCAATAAGAGTCACAAAAAGACAACGAAAACGAAAGC
TCGTGTGTAGTCGACCATCATGTACAGGTCAGACATCAGAAAAAGATTCA
ACGTTAAAATCAGCCAAACCAAGAGAGGAGAGCGAAACCATCTCTAAAGT
TTCACCTTCAAACACATGTTCATTCAGCATTAAAAGTGtccGATAACTTC
ACAAGAACAAATTTCGAAACCACGCACAGCAACAGAAGACGATAAAATCA
GAATAAAAAACTCATCCACAAAGAATAAAACTCTTCCAATTTCGAATGGC
AGTAATAGGAAAC
Run BLAST on NCBI

transcript from alignment at sc0001362:57151..58328-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035786 ID=TCONS_00035786|Name=TCONS_00035786|organism=Clytia hemisphaerica|type=transcript|length=1178bp|location=Sequence derived from alignment at sc0001362:57151..58328- (Clytia hemisphaerica)
TTCAGCTTTCGTAGTATATATACTGGTACTAAAGTGTCTTCCCTCCCCCT
CCCCCATTGTTGAGCTCTGATTTGCTCCTGCAGCTTATCAACAATGAGGA
GGGGAAGAAGGGAAGGAGCCAGTGGTAGTTCATAGAAGAAAATTCCAATA
TTTATGGCCAGGATTGTACGAATGATATTGTCAAGCAGACTGGGGTTGTT
GACTGTGGTGTTCACGTTTGTGTAAACATCTACAACCTGGTATTTGACAA
GTCACTGAAGTTTGGGAATGATAGCTACGATGCAAGATATTTCATCGGCT
GCAAAATACTTGAATCAAGAAGCAGACGTAATGTTGTCAGACAAAACAAG
ACCACAAGTGAAACAAAACGAATTATTGTAGATCCCGATATCGTCAACAT
GTCTGACATTCATTCAATAAGAGTCACAAAAAGACAACGAAAACGAAAGC
TCGTGTGTAGTCGACCATCATGTACAGGTAATTCAGTTTTTCAAAGAATA
GCAGCATACTTTGTCATCTTGAGGAATCTTTCGAATACATTAATTTTGGG
CACACTCTTCTAAACAAAAATAATTTCCTACTGAAAAAGATTTTACTTAG
TGGGCTAAATCGGCTGTCAGTTAGCAATAAGCGATAAGTATGCTGTACGC
AAATTTTTTACGCCAATTATCAAATAATACATTACTTCTAGCTTAAAGTG
AAAACTTAACCTAGATTTTTCAATAGTATACTTGTTTAAATCATGTTGTT
TCCTAACTATATCTTTTCCAAACGGTTTAAAGACCAAACATTAAATATTT
GAATAATTTGTATTTGTAGGTCAGACATCAGAAAAAGATTCAACGTTAAA
ATCAGCCAAACCAAGAGAGGAGAGCGAAACCATCTCTAAAGTTTCACCTT
CAAACACATGTTCATTCAGCATTAAAAGTGGTAGGTAACTTTTGATCATT
TGACAAAATTATCAAGCCTTAAACACTTGATCAAGTTCTGATAACCTTCT
TCATTTCAGTTTTTTATATTTTTGAAATATTGAAATCATTTTCATTTTCA
AAGTCCGATAACTTCACAAGAACAAATTTCGAAACCACGCACAGCAACAG
AAGACGATAAAATCAGAATAAAAAACTCATCCACAAAGAATAAAACTCTT
CCAATTTCGAATGGCAGTAATAGGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020996XLOC_020996Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035786-exon-sc0001362-1575043694:57852..58328TCONS_00035786-exon-sc0001362-1575043694:57852..58328Clytia hemisphaericaexon
TCONS_00035786-exon-sc0001362-1575043694:57399..57509TCONS_00035786-exon-sc0001362-1575043694:57399..57509Clytia hemisphaericaexon
TCONS_00035786-exon-sc0001362-1575043694:57151..57275TCONS_00035786-exon-sc0001362-1575043694:57151..57275Clytia hemisphaericaexon
TCONS_00035786-exon-sc0001362-1510915933:57852..58328TCONS_00035786-exon-sc0001362-1510915933:57852..58328Clytia hemisphaericaexon
TCONS_00035786-exon-sc0001362-1510915933:57399..57509TCONS_00035786-exon-sc0001362-1510915933:57399..57509Clytia hemisphaericaexon
TCONS_00035786-exon-sc0001362-1510915933:57151..57275TCONS_00035786-exon-sc0001362-1510915933:57151..57275Clytia hemisphaericaexon
TCONS_00035786-exon-sc0001362-1491911889:57852..58328TCONS_00035786-exon-sc0001362-1491911889:57852..58328Clytia hemisphaericaexon
TCONS_00035786-exon-sc0001362-1491911889:57399..57509TCONS_00035786-exon-sc0001362-1491911889:57399..57509Clytia hemisphaericaexon
TCONS_00035786-exon-sc0001362-1491911889:57151..57275TCONS_00035786-exon-sc0001362-1491911889:57151..57275Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001362supercontigsc0001362:57151..58328 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0703923	0	0	0	0	0.0750134	0.0905005	0.0847254	0.177955	0.0734753	0.142634	0.0937618	0.32771	0.486186	1.43896	1.7158	1.90236	1.24574	1.87072	1.87927	0.680593	0.0995908	0.564973	0.0733775	0.377886	0.0674508	0.289566	0.515054	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035786 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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