TCONS_00035785 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035785
Unique NameTCONS_00035785
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length422

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035785 ID=TCONS_00035785|Name=TCONS_00035785|organism=Clytia hemisphaerica|type=transcript|length=422bp
ACAAGAACAAATTTCGATGAAAGGTCTACAAAATTCACAAGAACAAATTT
CGAAACCACGCACAACAACAAATGACGATAATATCAGAATCAAGAACTCA
TCCACAAAGAGTGAAACTCTTCCGAACTCTAATGGCAGCAGTAACAAACC
TCAAGGTCCTCAAACATCAAAAGATTCGAAATTGAACAAACTTACAGATA
AGGACAGATTATTCACATCCAACAACACATTCTTAAATTCATcttcgaaa
aaagaaatttttgttaaaCTAGTGGGCGTTGAAAATAAGAGTCATGGTCA
GAAAGCAGAAAAACCTGGCAAATCCAGAGACGACGACAAAATCAACTCAA
TGAATCCTCCTTCATCTCAAGAAAAATGGAATGTTTCTATCCTTCACAGT
TCCGGTAAACCCAAAAAGAAAC
Run BLAST on NCBI

transcript from alignment at sc0001362:55578..56990-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035785 ID=TCONS_00035785|Name=TCONS_00035785|organism=Clytia hemisphaerica|type=transcript|length=1413bp|location=Sequence derived from alignment at sc0001362:55578..56990- (Clytia hemisphaerica)
ACAAGAACAAATTTCGATGAAAGGTCCACAAACTGCACAAGAACAAATCT
TGAAACCACGCACAACAACAAAAGACAATAATATCAGATTCAAAAACTCG
TCCACGAAGAGTGGAACTCTTCCAAACTCTAATGGCAATAGTAGCAACCC
TTAAGGTAACCTTTAATACAGTAAATCTATCAAAAGGATTCTTTCCTATT
TTTTATGTACACTCTTACGCCATAGCAGTCAAGTATCATTGTTTCTCTAT
CATTCACTAAATATTGTAATATTGAAATCATTTTCATTTGCAAGGTCTAC
AAAATTCACAAGAACAAATTTCGAAACCACGCACAACAACAAATGACGAT
AATATCAGAATCAAGAACTCATCCACAAAGAGTGAAACTCTTCCGAACTC
TAATGGCAGCAGTAACAAACCTCAAGGTTCCCTTTAGTACTGTAAATTTA
TCAAAGGAATTCTCGCGTATTTTTCTATGGACACTCCAACACTATATCAG
ACAATTATTATTGTTTCTCTAAATTTCTCTAAATATTGAAATTTTTGAAA
TTTCTTATATCAAAGGTCCTCAAACATCAAAAGATTCGAAATTGAACAAA
CTTACAGATAAGGACAGATTATTCACATCCAACAACACATTCTTAAATTC
ATCTTCGAAAAAAGAAATTTTTGTTAAACTAGTGGGCGTTGAAAATAAGA
GTCATGGTAAGTATTATTGTTTGTTAATTTTTATTACCAGAAATAATATT
TAAGCACACACTCTTGGTATACTCAATAGTTATTGCCTTATAATTACTGC
TGCACCTCTTAGTAATTTATTCGTAAAACTTCTATATTCATTATTCGTTG
CTAAACTTCATCAAGCCCACAAAAGTTCAACAATTAGCAAGCAAAACAAC
GAGCCAGAAGAAAATAGAATTGCCTACGACAATATAATCTCAAGTAGCGA
CTCTCATATCTGATTTATCCATCATTTTAATTACTTACATATTTCTCTTT
CAAACATAAAACATTGAAAGATTTCAATCATTTGTATTTACAGGTCAGAA
AGCAGAAAAACCTGGCAAATCCAGAGACGACGACAAAATCAACTCAATGA
ATCCTCCTTCATCTCAAGGTATAAAATTAAATTAACCTTTACATATACTA
CCAAAATTTATACGATAATATCACGACTAATCAAAAATATTAGTATATTC
TAATTAAGATTCTTGATAAACAACCAGGCCCAAATCATGAAGACATAAAT
TTCTTCCGAATGGCGCAAACCATGGTCATGTCCTATATACACAACGATAA
GTAACGATAAATCTTTTAATAATTCACTATCATTCGTACAATTACAAATT
CTTTCTCATTAGAAAAATGGAATGTTTCTATCCTTCACAGTTCCGGTAAA
CCCAAAAAGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020995XLOC_020995Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035785-exon-sc0001362-1575043694:56968..56990TCONS_00035785-exon-sc0001362-1575043694:56968..56990Clytia hemisphaericaexon
TCONS_00035785-exon-sc0001362-1575043694:56565..56696TCONS_00035785-exon-sc0001362-1575043694:56565..56696Clytia hemisphaericaexon
TCONS_00035785-exon-sc0001362-1575043694:56285..56425TCONS_00035785-exon-sc0001362-1575043694:56285..56425Clytia hemisphaericaexon
TCONS_00035785-exon-sc0001362-1575043694:55873..55947TCONS_00035785-exon-sc0001362-1575043694:55873..55947Clytia hemisphaericaexon
TCONS_00035785-exon-sc0001362-1575043694:55578..55628TCONS_00035785-exon-sc0001362-1575043694:55578..55628Clytia hemisphaericaexon
TCONS_00035785-exon-sc0001362-1510915933:56968..56990TCONS_00035785-exon-sc0001362-1510915933:56968..56990Clytia hemisphaericaexon
TCONS_00035785-exon-sc0001362-1510915933:56565..56696TCONS_00035785-exon-sc0001362-1510915933:56565..56696Clytia hemisphaericaexon
TCONS_00035785-exon-sc0001362-1510915933:56285..56425TCONS_00035785-exon-sc0001362-1510915933:56285..56425Clytia hemisphaericaexon
TCONS_00035785-exon-sc0001362-1510915933:55873..55947TCONS_00035785-exon-sc0001362-1510915933:55873..55947Clytia hemisphaericaexon
TCONS_00035785-exon-sc0001362-1510915933:55578..55628TCONS_00035785-exon-sc0001362-1510915933:55578..55628Clytia hemisphaericaexon
TCONS_00035785-exon-sc0001362-1491911889:56968..56990TCONS_00035785-exon-sc0001362-1491911889:56968..56990Clytia hemisphaericaexon
TCONS_00035785-exon-sc0001362-1491911889:56565..56696TCONS_00035785-exon-sc0001362-1491911889:56565..56696Clytia hemisphaericaexon
TCONS_00035785-exon-sc0001362-1491911889:56285..56425TCONS_00035785-exon-sc0001362-1491911889:56285..56425Clytia hemisphaericaexon
TCONS_00035785-exon-sc0001362-1491911889:55873..55947TCONS_00035785-exon-sc0001362-1491911889:55873..55947Clytia hemisphaericaexon
TCONS_00035785-exon-sc0001362-1491911889:55578..55628TCONS_00035785-exon-sc0001362-1491911889:55578..55628Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001362supercontigsc0001362:55578..56990 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0507251	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.10326	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035785 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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