TCONS_00035784 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035784
Unique NameTCONS_00035784
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1175

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035784 ID=TCONS_00035784|Name=TCONS_00035784|organism=Clytia hemisphaerica|type=transcript|length=1175bp
caaggcCTGCTAACTTCACAAGAACAAATTTCGATGAAAGGTCCACAAAC
TGCACAAGAACAAATCTTGAAACCACGCACAACAACAAAAGACAATAATA
TCAGATTCAAAAACTCGTCCACGAAGAGTGGAACTCTTCCAAACTCTAAT
GGCAATAGTAGCAACCCTTAAGGTCTACAAAATTCACAAGAACAAATTTC
GAAACCACGCACAACAACAAATGACGATAATATCAGAATCAAGAACTCAT
CCACAAAGAGTGAAACTCTTCCGAACTCTAATGGCAGCAGTAACAAACCT
CAAGGTCCTCAAACATCAAAAGATTCGAAATTGAACAAACTTACAGATAA
GGACAGATTATTCACATCCAACAACACATTCTTAAATTCATcttcgaaaa
aagaaatttttgttaaaCTAGTGGGCGTTGAAAATAAGAGTCATGGTCAG
AAAGCAGAAAAACCTGGCAAATCCAGAGACGACGACAAAATCAACTCAAT
GAATCCTCCTTCATCTCAAGAAAAATGGAATGTTTCTATCCTTCACAGTT
CCGGTAAACCCAAAAAGAAACATATTTTGCAAACTAAAGATTAcatatat
tttttggatcgccgatacaATACAATGGATCATCGTCTGATTCAAGCTCG
GAAGAAGATATATATAAAGAACCCGAACTGGATGAAGGCTTCGCGAAATT
TATTGAAAGAGACAATGCCATACTCCGCTTATTAGaagaaaacaaacaac
aaacatcCCAGTCAGAGAGGTTCAAAGTGTTTACCGGAAAGGGGACCTCG
CTTAACAGATATAAAGCTGATGCACTGCGTGAATTTCACTACATTGGGAT
GGATGACAGCCAAGTAATACAATGcgaaattgacaaaaatgatCTGTTTG
GTTTGGAAGGATACGAGCGAATTCCAATCTCATTCCAAAGGGGAAGCTAC
TTTGATACAGTAGAGTACCAATTCGTGCCAGAAATCTACACCTACTATAT
AATGGATAAAAGAAAACTCACTTATAAACAGGCTACTTCATTTATGTGCG
GGAAACATCAGCCAACGGCATATCACCTTCCCTTGAAGAGATTTTCGGTC
AAGGAACAGATGGGATTGTCATCAGAACAGATAGCGAAATGATTCCAATC
AATTTGTGCAACTTTGTGTCTTGCT
Run BLAST on NCBI

transcript from alignment at sc0001362:51786..57007-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035784 ID=TCONS_00035784|Name=TCONS_00035784|organism=Clytia hemisphaerica|type=transcript|length=5222bp|location=Sequence derived from alignment at sc0001362:51786..57007- (Clytia hemisphaerica)
CAAGGCCTGCTAACTTCACAAGAACAAATTTCGATGAAAGGTCCACAAAC
TGCACAAGAACAAATCTTGAAACCACGCACAACAACAAAAGACAATAATA
TCAGATTCAAAAACTCGTCCACGAAGAGTGGAACTCTTCCAAACTCTAAT
GGCAATAGTAGCAACCCTTAAGGTAACCTTTAATACAGTAAATCTATCAA
AAGGATTCTTTCCTATTTTTTATGTACACTCTTACGCCATAGCAGTCAAG
TATCATTGTTTCTCTATCATTCACTAAATATTGTAATATTGAAATCATTT
TCATTTGCAAGGTCTACAAAATTCACAAGAACAAATTTCGAAACCACGCA
CAACAACAAATGACGATAATATCAGAATCAAGAACTCATCCACAAAGAGT
GAAACTCTTCCGAACTCTAATGGCAGCAGTAACAAACCTCAAGGTTCCCT
TTAGTACTGTAAATTTATCAAAGGAATTCTCGCGTATTTTTCTATGGACA
CTCCAACACTATATCAGACAATTATTATTGTTTCTCTAAATTTCTCTAAA
TATTGAAATTTTTGAAATTTCTTATATCAAAGGTCCTCAAACATCAAAAG
ATTCGAAATTGAACAAACTTACAGATAAGGACAGATTATTCACATCCAAC
AACACATTCTTAAATTCATCTTCGAAAAAAGAAATTTTTGTTAAACTAGT
GGGCGTTGAAAATAAGAGTCATGGTAAGTATTATTGTTTGTTAATTTTTA
TTACCAGAAATAATATTTAAGCACACACTCTTGGTATACTCAATAGTTAT
TGCCTTATAATTACTGCTGCACCTCTTAGTAATTTATTCGTAAAACTTCT
ATATTCATTATTCGTTGCTAAACTTCATCAAGCCCACAAAAGTTCAACAA
TTAGCAAGCAAAACAACGAGCCAGAAGAAAATAGAATTGCCTACGACAAT
ATAATCTCAAGTAGCGACTCTCATATCTGATTTATCCATCATTTTAATTA
CTTACATATTTCTCTTTCAAACATAAAACATTGAAAGATTTCAATCATTT
GTATTTACAGGTCAGAAAGCAGAAAAACCTGGCAAATCCAGAGACGACGA
CAAAATCAACTCAATGAATCCTCCTTCATCTCAAGGTATAAAATTAAATT
AACCTTTACATATACTACCAAAATTTATACGATAATATCACGACTAATCA
AAAATATTAGTATATTCTAATTAAGATTCTTGATAAACAACCAGGCCCAA
ATCATGAAGACATAAATTTCTTCCGAATGGCGCAAACCATGGTCATGTCC
TATATACACAACGATAAGTAACGATAAATCTTTTAATAATTCACTATCAT
TCGTACAATTACAAATTCTTTCTCATTAGAAAAATGGAATGTTTCTATCC
TTCACAGTTCCGGTAAACCCAAAAAGAAACATATTTTGCAAACTAAAGGT
AACTTTATTTTCTTATCGCCTCAAAATTTTAAAGAATGCACATGTTTTTG
CAAGCACAATATTCATTTGTTTCAGTAGATTTTCTGTCTAAGTCAATGAA
AAATATATATACTCGTTTTAAAATATTTGATATGTAATAATTAGCTTTTA
CGCGAGGAAAATAGCCAGAAAATGTGGAACGAGTGACATATTTCCATATT
GTACGAGCAAATGTCTGATAACTGGTTTATCGGTGACACAAAAATGCACT
TTTAACTTTGTGTCGGAAGAAAGCGCAGGGTACTTTTAGCAAAGTGACGT
TAGATTGCTGCTACCGCTACAATGCAACAACATCTTTTTGTCAATTTTTA
CATGTAAAATAGAAGATACTTTGTACTCTTTTTAAACAATTAGATTACAT
ATATTTTTTGGATCGCCGATACAATACAATGGATCATCGTCTGATTCAAG
CTCGGAAGAAGATATATGTAAGTATTTTTATCAAAAGTAATAAAGGGCCA
ATCATCATTTTCTAAAAATGCTTCATTGTATATAAATCAGATACCACTGA
TAAGATAATTAAGAGTACTCAATTCCATTTGAAAATGGAATTACTTTTGT
AAATGGGAATGGACGATCAAAAGCATTCAAATACTGAAAAAACTTACCAA
TTTGGTTTTAGATAAAGAACCCGAACTGGATGAAGGCTTCGCGAAATTTA
TTGAAAGAGACAATGCCATACTCCGCTTATTAGAAGAAAACAAACAACAA
ACATCCCAGTCAGAGAGGTTCAAAGTGTTTACCGGAAAGGGGACCTCGCT
TAACAGATATAAAGCTGATGCACTGCGTGAATTTCACTACATTGGGATGG
ATGACAGCCAAGTAATACAATGCGAAATTGACAAAAATGATCTGTTTGGT
TTGGAAGGATACGAGCGAATTCCAATCTCATTCCAAAGGGGAAGCTACTT
TGATACAGTAGAGTACCAATTCGTGCCAGAAATCTACACCTACTATATAA
TGGATAAAAGAAAACTCACTTATAAACAGGCTACTTCATTTATGTGCGGG
AAACATCAGCCAACGGCATATCACGTAAGCAAGCTCAATCAGGTAAGTCA
TTTAACTCATAGCTAGCTAGCTAGCTATAGTTTTACTATACTTACCATTT
AGTATACATATTTTTTTACAAGCAAGTGTCTGTCTCAGTCAGGCTAGTGT
ATGCTTAAGTTCTCAAAGCATCCAGGCATAGGTTAGGCTTATGCATGCTT
ATGATTCACCCGAGCCAAGTTTTTAGTGAAAATTCAGACATTTTGTTAAA
TTTGTTCAGATTTTGAGAGCCGTGGAATCAGTAGCGGCCTGGCTTAATTT
TCATGGTGGTGCAAACTATGAAATTGGCGCCCCTGGTATTTTTGTCCTTA
TTTGCGCCCTCCACCATAAGTGAAAATATTAAACTGTAAGAGCAGTGACT
GGTTGAAAGTAACGCCCAGAATCTCTGAGTTAACAAACTTTTATTTATAC
GAAGGTGGTGGTAATGATAACTTGATATCTATTTCCTTGTTATTTCCTGG
TCTTACTTTACTCTCCATTAAAGATCAGTGGCTGAAAGAGGCCCCGAAAA
TTCGAAAGTTGACAGGAATAAGGGTTCTTTGTAATACGGGGGGGTTTGTA
CTTTTACGGTGTGACGGGATTGGCCCTTTTTTAGTACGGTATTACGGGAT
TTGACGAAAATAGAGACGGGAAAACGGTATTTTAAAATTAGACGGTGACG
GTATTTAGGTACATTTTTGCCATGTACAAGCCGGTGTGAGGATGTTATTA
TTTTTTCAATTTTCGGGATTCCGAGATTCAGCCCAAATTTTGACGGGAAA
ACGGTATTTCGAACCCCTACAACCCCCCACCCCCCTGCAAAAAAATTTGG
TGTAAGAGAGGTCAAACAGCTTAAAAGATATTCTAAAAAGGAGAAAGTCC
GCATAAGACCAAAAAAACCACAGCGAGCAGTTTCGATCAATCTCTCATTT
TGGGGGTTAGCATCCTCTTTAACCCCTGGTGGATACACAACACTTCTCTT
AATTTGACTTTCGCAATTCAATGTTGATAGTAGAAAAAATTCGTAAAAGA
GAACGAAGCGCCGCAGGCGAAAAAAAAATTACATTGCACTTATAGAAGGC
GCTAAAAACGTGTCAAAAGGGCGCCAAATCGCCCAACCAAACATCAAAAA
AAAATTTGGCGCCCCCTTGAAAAGCTTTTTTGGCGCCCCTCTCAGGTCTT
TCTGGGTGGTGCACTGCACACCCTGCACCCCCTGCCAGGCCGCCACTGCG
TGGAATGCTTTTTTTTACTTTACCTCTACCAAGCCTTTTTAAACAGATAA
AAAATGACAAATTGAAAAATATTTCAGGCTAGCGTATATGCTTATGTTTT
ACTTAGGAATTCTGCAAATCTGAGCCTACATATGCTTTTAAGCGTTGTGC
TTATAAAAAAACATATAACGCGTAAGCCCTAATCAAGGCACGCTCTTGTT
CTGCCGTTTCATATACAAGTTTTTTTTATAATAACATCCAAGTTTTTGAA
GCCTTATGTTCTTAACTTTTTGAGTCCTAAAGCCTGAAAATGTTTTCAAT
TGTTCTTATTTTCACCATTTTTCTAAGGAAAAGGGTGTTTTAGAGTCTGC
AAAGCCTTAAAATGTTCTTTGTTCTTAATATTTTTTGCTATTAAAGCTTT
TATGTGCTTGTTTAGCTTGTTCTTATAAAGGAAACGTGCACAATGCAATT
TCGTAATTGCCGTGTGAGCATTTGTGTGATGAGTGGCGAAGGGCCTTGTA
TATTCATTGCTTTTATAATTTGTTGAATGTTTTAGGAATACAATTGTCAG
CGAATGGGTTTTAGAACTCTCTGTCTTTTAAACGGGTTCATTTTTTAATT
CATTTCAATTTAATGTTCAAAGTTTGATTGATTAAACAGGTAGGTTCATA
AAGTTTTATTTAATTATTAGTAAAAGTAAACTTAGCTCACATCACCTTAT
CCGGAAATCTATAGTTGTAATAAAGTCCTATTCGTTCCTATAATTTATGA
TCTAGCTTTGACTTTGAGCTTGGCTTTCTAGGAGAAAAAAATCACAAAAA
TTGCCGGTTCTAAATCGAATCTAGAATGGTAGGTGTTGATATCTGCCAAG
TATTTGTTTTTTACTTCTATCGTCTACTTATTAAGGTGAAATCATCTTTA
GTTTGTTTTAGGAGGAAGTCTATGCGCGAGTAAATTCAACAGTTGATGGT
GGCATCTTAATACAATGTAGGTGTTATTTACTTTTGGAAATCTTATTTTG
GAAAATAGTGTTCGTGATGAACAAACGGGATGTACTCTTTCGCGTCTGCT
TTCCATCAGGATATTTGCAAATATCTGACGACCTGCTTTTGACAGAACCC
TCTAATATTAACGACTCCTATATATGCTGACCACAAGATTTGGACGTGTT
ATGGAATAGCCTGACATAATATCGCTACTAATTTTATTTTTCCTACTTAT
TCCTTCAGCTTCCCTTGAAGAGATTTTCGGTCAAGGAACAGATGGGATTG
TCATCAGAACAGATAGCGAAATGATTCCAATCAATTTGGTGAGCAATTTT
TTTGCACGTTTGGACTAAAAATCTTATATCCAAATAAGTTAGATCTCTTT
GACAAAATTATACACCATGATATCAGTTGAGCAGTATGTTCGATTTGAAC
ATCATGAGTCAGCTTTCCTATTATGTACATAGCAAATTGTTATTATGATT
TAGTGCAACTTTGTGTCTTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020995XLOC_020995Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035784-exon-sc0001362-1575043694:56836..57007TCONS_00035784-exon-sc0001362-1575043694:56836..57007Clytia hemisphaericaexon
TCONS_00035784-exon-sc0001362-1575043694:56565..56696TCONS_00035784-exon-sc0001362-1575043694:56565..56696Clytia hemisphaericaexon
TCONS_00035784-exon-sc0001362-1575043694:56285..56425TCONS_00035784-exon-sc0001362-1575043694:56285..56425Clytia hemisphaericaexon
TCONS_00035784-exon-sc0001362-1575043694:55873..55947TCONS_00035784-exon-sc0001362-1575043694:55873..55947Clytia hemisphaericaexon
TCONS_00035784-exon-sc0001362-1575043694:55560..55628TCONS_00035784-exon-sc0001362-1575043694:55560..55628Clytia hemisphaericaexon
TCONS_00035784-exon-sc0001362-1575043694:55091..55164TCONS_00035784-exon-sc0001362-1575043694:55091..55164Clytia hemisphaericaexon
TCONS_00035784-exon-sc0001362-1575043694:54484..54896TCONS_00035784-exon-sc0001362-1575043694:54484..54896Clytia hemisphaericaexon
TCONS_00035784-exon-sc0001362-1575043694:51970..52049TCONS_00035784-exon-sc0001362-1575043694:51970..52049Clytia hemisphaericaexon
TCONS_00035784-exon-sc0001362-1575043694:51786..51804TCONS_00035784-exon-sc0001362-1575043694:51786..51804Clytia hemisphaericaexon
TCONS_00035784-exon-sc0001362-1510915933:56836..57007TCONS_00035784-exon-sc0001362-1510915933:56836..57007Clytia hemisphaericaexon
TCONS_00035784-exon-sc0001362-1510915933:56565..56696TCONS_00035784-exon-sc0001362-1510915933:56565..56696Clytia hemisphaericaexon
TCONS_00035784-exon-sc0001362-1510915933:56285..56425TCONS_00035784-exon-sc0001362-1510915933:56285..56425Clytia hemisphaericaexon
TCONS_00035784-exon-sc0001362-1510915933:55873..55947TCONS_00035784-exon-sc0001362-1510915933:55873..55947Clytia hemisphaericaexon
TCONS_00035784-exon-sc0001362-1510915933:55560..55628TCONS_00035784-exon-sc0001362-1510915933:55560..55628Clytia hemisphaericaexon
TCONS_00035784-exon-sc0001362-1510915933:55091..55164TCONS_00035784-exon-sc0001362-1510915933:55091..55164Clytia hemisphaericaexon
TCONS_00035784-exon-sc0001362-1510915933:54484..54896TCONS_00035784-exon-sc0001362-1510915933:54484..54896Clytia hemisphaericaexon
TCONS_00035784-exon-sc0001362-1510915933:51970..52049TCONS_00035784-exon-sc0001362-1510915933:51970..52049Clytia hemisphaericaexon
TCONS_00035784-exon-sc0001362-1510915933:51786..51804TCONS_00035784-exon-sc0001362-1510915933:51786..51804Clytia hemisphaericaexon
TCONS_00035784-exon-sc0001362-1491911889:56836..57007TCONS_00035784-exon-sc0001362-1491911889:56836..57007Clytia hemisphaericaexon
TCONS_00035784-exon-sc0001362-1491911889:56565..56696TCONS_00035784-exon-sc0001362-1491911889:56565..56696Clytia hemisphaericaexon
TCONS_00035784-exon-sc0001362-1491911889:56285..56425TCONS_00035784-exon-sc0001362-1491911889:56285..56425Clytia hemisphaericaexon
TCONS_00035784-exon-sc0001362-1491911889:55873..55947TCONS_00035784-exon-sc0001362-1491911889:55873..55947Clytia hemisphaericaexon
TCONS_00035784-exon-sc0001362-1491911889:55560..55628TCONS_00035784-exon-sc0001362-1491911889:55560..55628Clytia hemisphaericaexon
TCONS_00035784-exon-sc0001362-1491911889:55091..55164TCONS_00035784-exon-sc0001362-1491911889:55091..55164Clytia hemisphaericaexon
TCONS_00035784-exon-sc0001362-1491911889:54484..54896TCONS_00035784-exon-sc0001362-1491911889:54484..54896Clytia hemisphaericaexon
TCONS_00035784-exon-sc0001362-1491911889:51970..52049TCONS_00035784-exon-sc0001362-1491911889:51970..52049Clytia hemisphaericaexon
TCONS_00035784-exon-sc0001362-1491911889:51786..51804TCONS_00035784-exon-sc0001362-1491911889:51786..51804Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001362supercontigsc0001362:51786..57007 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0831671	0	2.08364	1.91448	0.973927	0.5169	0	0	0	0	0	0	1.63142	1.13144	0.840616	0.133523	1.81371	1.46771	0	0.0553635	0	0	0.977566	0.574557	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035784 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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