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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035760 ID=TCONS_00035760|Name=TCONS_00035760|organism=Clytia hemisphaerica|type=transcript|length=1539bpRun BLAST on NCBI protein sequence of TCONS_00035760-protein >TCONS_00035760-protein ID=TCONS_00035760-protein|Name=TCONS_00035760-protein|organism=Clytia hemisphaerica|type=polypeptide|length=491bp IQDHLEQAYKKKTLTGGQNTSTTVNGAVQKKQWLGTSPDMMGGNQGMMVVRun BLAST on NCBI transcript from alignment at sc0001360:47493..56778+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00035760 ID=TCONS_00035760|Name=TCONS_00035760|organism=Clytia hemisphaerica|type=transcript|length=9286bp|location=Sequence derived from alignment at sc0001360:47493..56778+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001360:47493..56778+ >TCONS_00035760 ID=TCONS_00035760|Name=TCONS_00035760|organism=Clytia hemisphaerica|type=CDS|length=17712bp|location=Sequence derived from alignment at sc0001360:47493..56778+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00035760 vs. Swiss-Prot (Human)
Match: ASTL (Astacin-like metalloendopeptidase OS=Homo sapiens GN=ASTL PE=1 SV=4) HSP 1 Score: 134.42 bits (337), Expect = 2.227e-34 Identity = 74/223 (33.18%), Postives = 113/223 (50.67%), Query Frame = 2
Query: 476 LFEGDIIRNKKLEV-EVSDMKKPLNQLRLRGIIQSSRWPHAIVPYRFHGNFSEKGKQVVASAINIIESKTCVNFKPKNDKDKSFIEFVHGGGCASNVGRQGGKQKIVLGTSCLI--VGIALHQLMHSLGFFHETSRRDRDKFVRIDYDEINKHMWYNFQRYRDPGRDESYDKFSIMHFGSYAFSLNGERTVISKSNAKEELGRRLDMSTGDIQKINNYYDCKK 1135
L EGDIIR + + K P+ G+++ VP+ + E +QV+ A+ E TC+ F D+ + FI + GC S+VGR GG Q + L +CL GI LH+LMH LGF+HE +R DRD+++R++++EI NF + + YD S+MH+G AFS G T+ +G+R ++S DI ++ Y C
Sbjct: 73 LIEGDIIRPSPFRLLSATSNKWPMGG---SGVVE--------VPFLLSSKYDEPSRQVILEALAEFERSTCIRFVTYQDQ-RDFISIIPMYGCFSSVGRSGGMQVVSLAPTCLQKGRGIVLHELMHVLGFWHEHTRADRDRYIRVNWNEILPGFEINFIKSQSSNMLTPYDYSSVMHYGRLAFSRRGLPTITPLWAPSVHIGQRWNLSASDITRVLKLYGCSP 283 The following BLAST results are available for this feature:
BLAST of TCONS_00035760 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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