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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035731 ID=TCONS_00035731|Name=TCONS_00035731|organism=Clytia hemisphaerica|type=transcript|length=924bp
NNATGTCCGTTTGTCAAATTTCCGTGTGGGATACCATATAGTCAGATGGG
GTTGGCGTTGATCGATGATAGATGGGAGACAGTTGGTTCCGGGTCTTCAC
TAATAGGTGCGACGGATGATGATGAGGGGCTGCGACAGACGTTCGCGAAA
TGGTTTGGTTTCTTGCATTTATGACAGACTTTTTGCCAGGCGGGGCATGT
AGAGCGTCCGTTTGGGTGCATTGGTTTACCACATCCAGAACATTGTTTCT
TTTGGTCGGTTGGTCTTCTCGGCTTGAATGACGACGATTTGACATATGCG
ACGTCGGATGGGGTATTCTCGAACGGTGATCTGAATTGGGTTGATGCGCG
ATTTGTGGCTTCAAGGGCAAGGAGACGGGTGGTCAAATCTTCAAGTGTTT
GCAGAGATGCGATTTCTGTTAATACTTTGGATTGATGGGTCGGGTTGCGT
ATGCCAGCGATTAATTGGGAGCGGATCATATCGGAGGCGTAGCATGGGGA
GCAATCATCGGATTCACAACTTCCGTTCGTTTTAAAGTCGCATAGCATGG
CTTGTGCTTTGAGACGTGAGATGAATGATGTCACGCTCTCACAGTCACTT
TGTCGAAGGTTGAAAAATTGCTGTCTATACACCTCTGGATGGATAGTCTT
AACGGCTACAGATTTGATAAACTTGAGGAGGTCGGCCTCGCTAGCGGTAC
TGAGGACTTCTGGTCCTATAAAGTTAAATAGCATTTCATTTACCTTCGAT
GAGCATGTGGATCGTAGTTCGTTTCGAATCTCAGCTTGGTTATTGAGTTT
GGCCATTTCTTTGTATCGTGACCATGAATCTTCGAAGATAATCCATCCGT
TATCTGAGCTGTCTGCTTCGATTGTTGGTCGGGTTGGCTTCGAGCTGCGA
TGTGGCGGTCCATTTTGGGGTTNN Run BLAST on NCBI protein sequence of TCONS_00035731-protein >TCONS_00035731-protein ID=TCONS_00035731-protein|Name=TCONS_00035731-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
XPQNGPPHRSSKPTRPTIEADSSDNGWIIFEDSWSRYKEMAKLNNQAEIR
NELRSTCSSKVNEMLFNFIGPEVLSTASEADLLKFIKSVAVKTIHPEVYR
QQFFNLRQSDCESVTSFISRLKAQAMLCDFKTNGSCESDDCSPCYASDMI
RSQLIAGIRNPTHQSKVLTEIASLQTLEDLTTRLLALEATNRASTQFRSP
FENTPSDVAYVKSSSFKPRRPTDQKKQCSGCGKPMHPNGRSTCPAWQKVC
HKCKKPNHFANVCRSPSSSSVAPISEDPEPTVSHLSSINANPI Run BLAST on NCBI transcript from alignment at sc0001354:28605..29528 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035731 ID=TCONS_00035731|Name=TCONS_00035731|organism=Clytia hemisphaerica|type=transcript|length=924bp|location=Sequence derived from alignment at sc0001354:28605..29528 (Clytia hemisphaerica)
NNAACCCCAAAATGGACCGCCACATCGCAGCTCGAAGCCAACCCGACCAA
CAATCGAAGCAGACAGCTCAGATAACGGATGGATTATCTTCGAAGATTCA
TGGTCACGATACAAAGAAATGGCCAAACTCAATAACCAAGCTGAGATTCG
AAACGAACTACGATCCACATGCTCATCGAAGGTAAATGAAATGCTATTTA
ACTTTATAGGACCAGAAGTCCTCAGTACCGCTAGCGAGGCCGACCTCCTC
AAGTTTATCAAATCTGTAGCCGTTAAGACTATCCATCCAGAGGTGTATAG
ACAGCAATTTTTCAACCTTCGACAAAGTGACTGTGAGAGCGTGACATCAT
TCATCTCACGTCTCAAAGCACAAGCCATGCTATGCGACTTTAAAACGAAC
GGAAGTTGTGAATCCGATGATTGCTCCCCATGCTACGCCTCCGATATGAT
CCGCTCCCAATTAATCGCTGGCATACGCAACCCGACCCATCAATCCAAAG
TATTAACAGAAATCGCATCTCTGCAAACACTTGAAGATTTGACCACCCGT
CTCCTTGCCCTTGAAGCCACAAATCGCGCATCAACCCAATTCAGATCACC
GTTCGAGAATACCCCATCCGACGTCGCATATGTCAAATCGTCGTCATTCA
AGCCGAGAAGACCAACCGACCAAAAGAAACAATGTTCTGGATGTGGTAAA
CCAATGCACCCAAACGGACGCTCTACATGCCCCGCCTGGCAAAAAGTCTG
TCATAAATGCAAGAAACCAAACCATTTCGCGAACGTCTGTCGCAGCCCCT
CATCATCATCCGTCGCACCTATTAGTGAAGACCCGGAACCAACTGTCTCC
CATCTATCATCGATCAACGCCAACCCCATCTGACTATATGGTATCCCACA
CGGAAATTTGACAAACGGACATNN Coding sequence (CDS) from alignment at sc0001354:28605..29528 >TCONS_00035731 ID=TCONS_00035731|Name=TCONS_00035731|organism=Clytia hemisphaerica|type=CDS|length=882bp|location=Sequence derived from alignment at sc0001354:28605..29528 (Clytia hemisphaerica)
NAACCCCAAAATGGACCGCCACATCGCAGCTCGAAGCCAACCCGACCAAC
AATCGAAGCAGACAGCTCAGATAACGGATGGATTATCTTCGAAGATTCAT
GGTCACGATACAAAGAAATGGCCAAACTCAATAACCAAGCTGAGATTCGA
AACGAACTACGATCCACATGCTCATCGAAGGTAAATGAAATGCTATTTAA
CTTTATAGGACCAGAAGTCCTCAGTACCGCTAGCGAGGCCGACCTCCTCA
AGTTTATCAAATCTGTAGCCGTTAAGACTATCCATCCAGAGGTGTATAGA
CAGCAATTTTTCAACCTTCGACAAAGTGACTGTGAGAGCGTGACATCATT
CATCTCACGTCTCAAAGCACAAGCCATGCTATGCGACTTTAAAACGAACG
GAAGTTGTGAATCCGATGATTGCTCCCCATGCTACGCCTCCGATATGATC
CGCTCCCAATTAATCGCTGGCATACGCAACCCGACCCATCAATCCAAAGT
ATTAACAGAAATCGCATCTCTGCAAACACTTGAAGATTTGACCACCCGTC
TCCTTGCCCTTGAAGCCACAAATCGCGCATCAACCCAATTCAGATCACCG
TTCGAGAATACCCCATCCGACGTCGCATATGTCAAATCGTCGTCATTCAA
GCCGAGAAGACCAACCGACCAAAAGAAACAATGTTCTGGATGTGGTAAAC
CAATGCACCCAAACGGACGCTCTACATGCCCCGCCTGGCAAAAAGTCTGT
CATAAATGCAAGAAACCAAACCATTTCGCGAACGTCTGTCGCAGCCCCTC
ATCATCATCCGTCGCACCTATTAGTGAAGACCCGGAACCAACTGTCTCCC
ATCTATCATCGATCAACGCCAACCCCATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035731-exon-sc0001354-1491911889:28605..29528 | TCONS_00035731-exon-sc0001354-1491911889:28605..29528 | Clytia hemisphaerica | exon |
| TCONS_00035731-exon-sc0001354-1510915933:28605..29528 | TCONS_00035731-exon-sc0001354-1510915933:28605..29528 | Clytia hemisphaerica | exon |
| TCONS_00035731-exon-sc0001354-1575043694:28605..29528 | TCONS_00035731-exon-sc0001354-1575043694:28605..29528 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001354 | supercontig | sc0001354:28605..29528 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001878 | Znf_CCHC |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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