TCONS_00035729 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035729
Unique NameTCONS_00035729
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length580

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035729 ID=TCONS_00035729|Name=TCONS_00035729|organism=Clytia hemisphaerica|type=transcript|length=580bp
CGGAGTCAGAAGTGCACAGAAATTCAGTTTTTCCCTCGTTACAAAAAAGG
CCGACCTGACTAGCANTTTGCCTTGGTAGAGGTGTAGAGCGCCCTGATGG
CAAGAATAATTTTGTCAGGAATGTCATAGAGTTTAaggatttcaaacatt
ttttctctATTAATAGAATCAAAAGCCTTTTTAAAATCAACGAAGCAGAG
AATAACTTCTTTGTCTAATTTACGCATTTCCTCAAGGATACGCCGAATGG
AAAGTATTTGCGAAAGAGTACCTCTACCTTTCCTgaaaccattttgattt
tttcgcaaCAAAGGATCAAGATATGGGACTATACGATTCAGGATCAGTTT
GTTATAGATTTTTGAAGCGATTGGCATTAATGTGATACCCCTATAGTTTG
AAGCAAGGGTGAGATCACCTTTCTTTGGCACAGGGATGATACCCCCTGTG
AGCCAAGCTGATGGAGGAGAATGGTATTCGAAGGTGTGGTTACAGAATTC
GAGGAGAAGTGTCAAAAAAGATCCCCATAGTGGgagaagctccaccgggg
ctgtaacactgtgacaggggtgtaattagc
Run BLAST on NCBI

protein sequence of TCONS_00035729-protein

>TCONS_00035729-protein ID=TCONS_00035729-protein|Name=TCONS_00035729-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MPIASKIYNKLILNRIVPYLDPLLRKNQNGFRKGRGTLSQILSIRRILEE
MRKLDKEVILCFVDFKKAFDSINREKMFEILKLYDIPDKIILAIRALYTS
TKAXC
Run BLAST on NCBI

transcript from alignment at sc0001354:12386..12965

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035729 ID=TCONS_00035729|Name=TCONS_00035729|organism=Clytia hemisphaerica|type=transcript|length=580bp|location=Sequence derived from alignment at sc0001354:12386..12965 (Clytia hemisphaerica)
gctaattacacccctgtcacagtgttacagccccggtggagcttctcCCA
CTATGGGGATCTTTTTTGACACTTCTCCTCGAATTCTGTAACCACACCTT
CGAATACCATTCTCCTCCATCAGCTTGGCTCACAGGGGGTATCATCCCTG
TGCCAAAGAAAGGTGATCTCACCCTTGCTTCAAACTATAGGGGTATCACA
TTAATGCCAATCGCTTCAAAAATCTATAACAAACTGATCCTGAATCGTAT
AGTCCCATATCTTGATCCTTTGttgcgaaaaaatcaaaatggtttcAGGA
AAGGTAGAGGTACTCTTTCGCAAATACTTTCCATTCGGCGTATCCTTGAG
GAAATGCGTAAATTAGACAAAGAAGTTATTCTCTGCTTCGTTGATTTTAA
AAAGGCTTTTGATTCTATTAATagagaaaaaatgtttgaaatcctTAAAC
TCTATGACATTCCTGACAAAATTATTCTTGCCATCAGGGCGCTCTACACC
TCTACCAAGGCAAANTGCTAGTCAGGTCGGCCTTTTTTGTAACGAGGGAA
AAACTGAATTTCTGTGCACTTCTGACTCCG

Coding sequence (CDS) from alignment at sc0001354:12386..12965

>TCONS_00035729 ID=TCONS_00035729|Name=TCONS_00035729|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at sc0001354:12386..12965 (Clytia hemisphaerica)
ATGCCAATCGCTTCAAAAATCTATAACAAACTGATCCTGAATCGTATAGT
CCCATATCTTGATCCTTTGttgcgaaaaaatcaaaatggtttcAGGAAAG
GTAGAGGTACTCTTTCGCAAATACTTTCCATTCGGCGTATCCTTGAGGAA
ATGCGTAAATTAGACAAAGAAGTTATTCTCTGCTTCGTTGATTTTAAAAA
GGCTTTTGATTCTATTAATagagaaaaaatgtttgaaatcctTAAACTCT
ATGACATTCCTGACAAAATTATTCTTGCCATCAGGGCGCTCTACACCTCT
ACCAAGGCAAANTGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020947XLOC_020947Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035729-proteinTCONS_00035729-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035729-exon-sc0001354-1491911889:12386..12965TCONS_00035729-exon-sc0001354-1491911889:12386..12965Clytia hemisphaericaexon
TCONS_00035729-exon-sc0001354-1510915933:12386..12965TCONS_00035729-exon-sc0001354-1510915933:12386..12965Clytia hemisphaericaexon
TCONS_00035729-exon-sc0001354-1575043694:12386..12965TCONS_00035729-exon-sc0001354-1575043694:12386..12965Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001354supercontigsc0001354:12386..12965 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.81692	2.23804	3.89787	4.02532	1.80542	1.63048	2.58182	1.49628	1.4505	1.2976	1.55013	1.52849	1.01758	1.78329	1.24891	0.757544	0.287148	1.39801	1.42316	1.5956	1.66424	1.75881	0.438578	0.199365	2.05342	1.00794	1.70461	1.67927	1.9105	0.432555
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035729 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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