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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035720 ID=TCONS_00035720|Name=TCONS_00035720|organism=Clytia hemisphaerica|type=transcript|length=1238bp
gaatattttttggcttgaaactcaaaaagttaagaacatcagcagacttc
aaaatttttggatgttcttataagaaaacgtgtatctttatcttatttat
ttattggattattatttttgccaggatatttttagaatatatttttgtat
attGGGAAGATTTCCAGCTCGCTTTTGGAAATTAAAAGATATTTACAGGA
GATGTTATTCTAGCAATAAATAGATGTCAGATTATTTATTACACGAGCTT
GCAGGTCTAGGTGACTGGAAACAAATCGAAGTATTATTTCGAATCAATGC
AGTAAAAGATGTAAATTTACAAGATGATGAATTTGAAGGCCAAACTCCAT
TACATTGGGCAGTCAGAAAAGGAAAATTAAAGTGTTGTAAACTTTTATTG
GAACATCATGCAGATGTTAGTATCAAGATGCATCAAGGATGGACAGTGAC
TCATTGTGCGGCGGAAAACGGTCATTTGGAGATCTTGCGGTTATTATATG
ATCATTTTGCACCGATGTTTGACAGAGATGACTTCAATGCTACACCAAAA
GATATAGCAAGAGTTTATGGACATAAAGACTGCTACCAATTTCTAGATGA
TGTTGAGAATGGACGTACAAAACGAAGAAGCATCGAAGAAAAGATAGAAG
AAAAATCTCTCCCACTCATAATCTCTAATGAAATCACAAACGAAAGACCC
AAAACAGCAAATCCTCCGTAAAAAACTGAAACTCACTATAAAGAGAAGAT
GGAAAACAACTATCTTGAGACATGTGGACCTGATTAGGCTACattaacaa
aattttgaaacatctcaattTAATGGCCACGCAGTTGAATCAGCCAAGTG
GGAATGGGTGATAAGGATTGAAGTGAATCTCCTGTTTAGGATTTGGATTG
AAAAAAGGTGGAGATGCTCTATAATCATTCGAAAATCCTGATGAAAAGTT
ATCCCATTGGGCAGAAAATGGATTTGAGCTGTAAAAGCTTAAAATGAAAA
GACATCTAGGATTGGAAAATGGATACAACATCAAAATGGCGTGCGACGTT
GAGTACAAAACAAAGTTTTCGATTTTAAAATAGCATCTCCAAAAGATGAA
AACTGACAAGTCAATcttcaaataaaataatttgattacctgttctgtaa
ttttttgtaattttctgtACGTGGAAGTgtttaataatttaaaattatcg
ggaattttaaagaaataactTGGATACCTTCTGGaact Run BLAST on NCBI transcript from alignment at sc0001354:42726..47830- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035720 ID=TCONS_00035720|Name=TCONS_00035720|organism=Clytia hemisphaerica|type=transcript|length=5105bp|location=Sequence derived from alignment at sc0001354:42726..47830- (Clytia hemisphaerica)
GAATATTTTTTGGCTTGAAACTCAAAAAGTTAAGAACATCAGCAGACTTC
AAAATTTTTGGATGTTCTTATAAGAAAACGTGTATCTTTATCTTATTTAT
TTATTGGATTATTATTTTTGCCAGGATATTTTTAGAATATATTTTTGTAT
ATTGGGAAGATTTCCAGCTCGCTTTTGGAAATTAAAAGATATTTACAGGT
GCTAATTTATTTCATTTTTACAAAATCATACTACCGGGTGCACCAAAAAA
AAGTATACAGGTTTGTCGAGATATTGCGAGCTTCAGGATTTTAAATTTTT
TGTTCATTCTTTTTTTATCGAATAGAGGATATGCTCTAAATTGAATTTTG
AGCTATCAAACATTAGGTTTGAAAAAATAGTTCGAAAATTATTTCAAAAA
AACTNTCGAATAGAGGATATGCTCTAAATTGAATTTTGAGCTATCAAACA
TTAGGTTTGAAAAAATAGTTCGAAAATTATTTCAAAAAAACTGACTTTTT
TTTAAGTCAAAATTTCAAAAAATCATCAAAAACAGCGAACAAACTTTCTC
TTGACACTTACCTTCTTTACACATAAAAATACCAAAAAATGCAACTCTGT
TCATCAAAACTCGTTACAGAAATTTAAACACCCCTGTCTCAGTGCCCCGG
TGGCATGATTTCAGTACATGATTTTTTTCAGTACATGGTTTCAGTACATG
ATTTTTTCCTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATACTACCGGGT
GCACCAAAAAAAAGTATACAGGTTTGTCGAGATATTGCGAGCTTCAGGAT
TTTAAATTTTTTGTTCATTCTTTTTTTACCGAATAGAGGATATGCTCTAA
ATTGAATTTTGAGCTATCATACATTAGGTTTGAAAAAATAGTTCGAAAAT
TATTTCAAAAAAACTGACTTTTTTTTAAGTCAAAATTTCAAAAGTTCATC
AAAACTCGTTACAGAAATTTAAAAATATAGCAGAACAAGCTATTCCCATG
TGGGATAAAAAGGTTTTGGAAATCTCCAAGAGAGGTTTTGATGTTATGTG
TGTGATATGTGAGAAAACTTTTGAAAAAATATATCACCATTCCTCAACTA
GTTGCTCAAAGAACTTGGGTCTGCATTGAGTTTGCTCGTGTTGTAAATAT
CTCAAATATCTATGACGTACAAATAAGATGGAGAAACTGTTGGCAAAATA
TAAATCAAGAAAAAAAAATTTAAAAAACCCAATAAAATTGTGTTCTTGTC
ATTTTGTCTTATTTATAGCGTGATTGCTGTTTTTAATAATATTTTGAAAT
GTCGACTCAAATTTAATGTACGATAGCTCAAAATTCAAGTTAGAGCATCC
TCTATACGATAAAAAAAGAATGAACAAAAAATTTAACCCTGAAGCTCACT
ATATCTTGACAAGCCCAATAAAGATTTTATCTGTATACTTTTTTATGGTG
CACCCGGTATATTTTATGCAACTATGAAATATATGTTATATACAATGATC
GAGAAATAATGGATATAATAAAATGGATTTTAAATTTATAAAGAAATTTG
TATATTTTTCGAGCCCGTCCAATTCAAAATTATAATTATTATAATGATCA
ACATTAAACAAATTATAAACTGTATGTGAAGTATAATTGGATGATTAAGC
GTTAATTAAAAAGGTGTAGTCATGTGTGTTTTCATGTATAAATATTGATG
AATAAGTGACAAAAAAAAAACGTTTGTGCTTTAGTGTAGTAGACATATTT
TTATAAGAACACAATGCTTCGATGCGCAAAATGTTAAGAACTATAGTTAA
AAACATTTCAAAGCTTCGCAGATTCTAAAACGCCTAATTCTTTAGTAACA
TGGACAAAAATACTTTCAAAAAGAGGAAAATAAGAACACGTGAAAAATAT
TTTTAGGCTTAAAAATAAAAAGTTAAGTCCTATAAAAAACGTGCAACTGG
CCAATTATACATGTCTAGTTCTAACAATTCCTTTTCGAAAACATTGATGT
GAAATGAAAATAAGAATCAAAACTTTCATATTTTGTCCTTTTTTCAGGAG
ATGTTATTCTAGCAATAAATAGATGTCAGATTATTTATTACACGAGCTTG
CAGGTCTAGGTGACTGGAAACAAATCGAAGTATTATTTCGAATCAATGCA
GTAAAAGATGTAAATTTACAAGATGATGAATTTGAAGGCCAAACTCCATT
ACATTGGGCAGTCAGAAAAGGTATGGATAAAATATTTTTGCAGAGTTCAG
ATCCAATTTTTGCAGATCCAATCTCCAAGGCGATACTCCTGGTTCTACTA
ATTTTGGGAAGCTAGTGTGCGATATTGAAGGCTCCTTTTTCGAAAACTAT
TCACTCTAAGGTAGCAGATGGCGCTTTTTCTTCCTGAATTACTATTTTAG
CCAATTTCTGCCCAAATCATTCCTTTATTTTAGCAAGAAAGTGTATCCCA
TGTTACTAATTAATTTGCAGAATAATATAGCTGAGAGATTAGAAACTCAT
TCCAGGGATATGTTATAGCGGAGCTGGATGAAGGACGAGAATTCCTTAGC
GGATTGCTCCTTTGTCTTTTCTATTGTAAACTGTTCATAATAGAAATCCA
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACA
AAGTATTCATGCAGTACGTTTGCATATATTTTGCTATGATGTTCCCGCTT
TTCATCAAAATAATATTTGCAAAAGATACCCCAAAAGCTTCTTTGTAAAT
GAAGTCTAATTTTATCAGCGTGTGTTATAAATTTGAAGCTTTCACGATTT
TTTCTTCAAAAATTTCGGATGTAAATATTTTGACAAATATTGTTTCAATT
GACTTGAAATTTTTTACCATACACGTTTTTTTTTATATAAGAACAAACTA
TATAAGAACATAAGGCTTCGAGCCCAAAATTTTAAGAACATTCTAAGAAC
ATACTAAGGCTTTGGAGACTTAAAAACATGCAATTTCTTAAGAAATTACA
TCAAAATGCTCAAAAAATGCTGAANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNATTAAAAAAGTTTAATTTCATATC
AAATTTTAATGTCAGGGACAGAGATAGAACAAGGCTTTTTCAAATGTGCG
TTATCCAGCTCCGCTATAACATATCCCTGCTCATTCTAGTAGAAACAAAA
ATTATGTTTAAACTTTTTAGGAAAATTAAAGTGTTGTAAACTTTTATTGG
AACATCATGCAGATGTTAGTATCAAGATGCATCAAGGATGGACAGTGACT
CATTGTGCGGCGGAAAACGGTCATTTGGAGATCTTGCGGTTATTATATGA
TCATTTTGCACCGATGTTTGACAGAGATGACTTCAATGCTACACCAAAAG
ATATAGCAAGAGTTTATGGACATAAAGACTGCTACCAATTTCTAGATGAG
TAAGTTATCTTTTTGTCTAATCTAAGTTCTCCTTTTCTCCTATTGAAGAG
AAATAATAAGTTTATGGGCAGTACATTGCAGGAAATGCTTTAAAATGTAG
ACGTACAAATAAAAACTCTAAATTCCATTCGCTTTGAGTGTTATTCTTAT
TATTCTGCTCCATGTTCCAAAAGCTTTAAAATACCAAAAGTGAAATATCT
AGTATTAAAGTAGAGTTAATTTTTTCCTCTGCATTTCTGCATTTTCCCCA
AGATTACAGCTGAATTATCTTTTCAACTGCCTTTAAATTGTTACAATCGA
ATCATTCGTACAAGAAAACGGCAAGTAAAACAAGCATTTAACCTCCTACA
GACTATTTCTGGAATAGCCCAATGTTGAAAAAAGGATTTTTTTATTGTTG
GTCAAACGTCCTCAATTTTTTAACAATGTATGTTGGTATGTTATCTGGAT
TCTTTTTAATTCTTCAGTGTTGAGAATGGACGTACAAAACGAAGAAGCAT
CGAAGAAAAGATAGAAGAAAAATCTCTCCCACTCATAATCTCTAATGAAA
TCACAAACGAAAGACCCAAAACAGCAAATCCTCCGTAAAAAACTGAAACT
CACTATAAAGAGAAGATGGAAAACAACTATCTTGAGACATGTGGACCTGA
TTAGGCTACATTAACAAAATTTTGAAACATCTCAATTTAATGGCCACGCA
GTTGAATCAGCCAAGTGGGAATGGGTGATAAGGATTGAAGTGAATCTCCT
GTTTAGGATTTGGATTGAAAAAAGGTGGAGATGCTCTATAATCATTCGAA
AATCCTGATGAAAAGTTATCCCATTGGGCAGAAAATGGATTTGAGCTGTA
AAAGCTTAAAATGAAAAGACATCTAGGATTGGAAAATGGATACAACATCA
AAATGGCGTGCGACGTTGAGTACAAAACAAAGTTTTCGATTTTAAAATAG
CATCTCCAAAAGATGAAAACTGACAAGTCAATCTTCAAATAAAATAATTT
GATTACCTGTTCTGTAATTTTTTGTAATTTTCTGTACGTGGAAGTGTTTA
ATAATTTAAAATTATCGGGAATTTTAAAGAAATAACTTGGATACCTTCTG
GAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00035720-exon-sc0001354-1575043694:47633..47830 | TCONS_00035720-exon-sc0001354-1575043694:47633..47830 | Clytia hemisphaerica | exon |
| TCONS_00035720-exon-sc0001354-1575043694:45511..45683 | TCONS_00035720-exon-sc0001354-1575043694:45511..45683 | Clytia hemisphaerica | exon |
| TCONS_00035720-exon-sc0001354-1575043694:43832..44060 | TCONS_00035720-exon-sc0001354-1575043694:43832..44060 | Clytia hemisphaerica | exon |
| TCONS_00035720-exon-sc0001354-1575043694:42726..43363 | TCONS_00035720-exon-sc0001354-1575043694:42726..43363 | Clytia hemisphaerica | exon |
| TCONS_00035720-exon-sc0001354-1510915933:47633..47830 | TCONS_00035720-exon-sc0001354-1510915933:47633..47830 | Clytia hemisphaerica | exon |
| TCONS_00035720-exon-sc0001354-1510915933:45511..45683 | TCONS_00035720-exon-sc0001354-1510915933:45511..45683 | Clytia hemisphaerica | exon |
| TCONS_00035720-exon-sc0001354-1510915933:43832..44060 | TCONS_00035720-exon-sc0001354-1510915933:43832..44060 | Clytia hemisphaerica | exon |
| TCONS_00035720-exon-sc0001354-1510915933:42726..43363 | TCONS_00035720-exon-sc0001354-1510915933:42726..43363 | Clytia hemisphaerica | exon |
| TCONS_00035720-exon-sc0001354-1491911889:47633..47830 | TCONS_00035720-exon-sc0001354-1491911889:47633..47830 | Clytia hemisphaerica | exon |
| TCONS_00035720-exon-sc0001354-1491911889:45511..45683 | TCONS_00035720-exon-sc0001354-1491911889:45511..45683 | Clytia hemisphaerica | exon |
| TCONS_00035720-exon-sc0001354-1491911889:43832..44060 | TCONS_00035720-exon-sc0001354-1491911889:43832..44060 | Clytia hemisphaerica | exon |
| TCONS_00035720-exon-sc0001354-1491911889:42726..43363 | TCONS_00035720-exon-sc0001354-1491911889:42726..43363 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001354 | supercontig | sc0001354:42726..47830 - |
Blast
BLAST of TCONS_00035720 vs. Swiss-Prot (Human)
Match: ANR66 (Ankyrin repeat domain-containing protein 66 OS=Homo sapiens GN=ANKRD66 PE=2 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 2.131e-16 Identity = 50/129 (38.76%), Postives = 74/129 (57.36%), Query Frame = 2
Query: 224 MSDYL-LHELAGLGDWKQIEVLFRINAVKDVNLQDDEFEGQTPLHWAVRXXXXXXXXXXXEHHADVSIKMHQGWTVTHCAAENGHLEILRLLYDHFAPMFDRDDFNATPKDIARVYGHKDCYQFLDDVE 607
MSD LH+ GD+ ++ + + + D N +D ++ +TPLHWA KG+++ +LL+E+ A + GWT H AAE GHL IL+ L+ A + D F TPK IA++YG K C FL+ E
Sbjct: 61 MSDMTKLHQAVAAGDYSLVKKILK-KGLCDPNYKDVDWNDRTPLHWAAIKGQMEVIRLLIEYGARPCLVTSVGWTPAHFAAEAGHLNILKTLHALHAAIDAPDFFGDTPKRIAQIYGQKACVAFLEKAE 188
The following BLAST results are available for this feature:
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