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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035707 ID=TCONS_00035707|Name=TCONS_00035707|organism=Clytia hemisphaerica|type=transcript|length=985bp
GCTTGCTGCCTTAATTTCAACGAAATCGGACATGTGGTTGTCCagaaagt
gagcattttaggtgaagaaaacgCTCTTACACTTTCAGAAGTAATGAAGT
TCATCACCGGTTGTTCTTCAAAACCAGCGTCTGGGTTACCAGGGAAAATC
ACTGTGATATTTGAGAAATATTGTCCCGAAAATTGCAGATGTAAACCCAC
AACTTCTAGCTGCGATATTCAAATCGAAGTTGCTTTGCACTACACTACCA
AACGTGACATGATGATAGCTTTAACAGATGCATGCCGCGAGAGTAAAGGA
ATGCTAAGATACTAATCCTATAAACGGACCGTTTTTAtataaatcttttg
ttttacaaAACGACATTGCGAATCAAATCGTATAGTATTACTAAAGTGAT
TTTGATATAGCttgcttttatttttgataatgtatATAATATTATTTATT
CATAAACTAGAGTATTTCAGATTTTCGCTAACAATATTTTGATCAGGAAT
CAGAAATAGGTATAGGAATATTTAACTTGATTGACTTGACTATATTAACT
TGGTTATTTTTGTGCAAAACTTTGGTTTGAATTATCTTAAATCCTTATCC
AAAGTAAAGAGGACCTTCATTTGTTATTAACAATATCATGTATGGtactt
tttatttcttttcgtTTATATTCATAtttgttttttcattaatttctgTT
CCCTACAGTGAAAGCCTTGCTAATACAATGCGTGTATTGGATTCAAAACC
AAAAAGCTCCTTCAGTACATCATGTTTTCGTTCTTTTCGTTTATTCTTac
gtttatttttattattctgtgcattttttttttgttattgccTTTGGTTG
TTTGGCGAAAGGTTCCATCTTTCATTCAAAGTTTTATTAAATCGTTCCGt
taaaagtatattttttaaatagatGATTATGATTTAAAGAGGCTTAAATT
GTGACTTTTTTATCATTCATATTTTTAAAGTTGAC Run BLAST on NCBI protein sequence of TCONS_00035707-protein >TCONS_00035707-protein ID=TCONS_00035707-protein|Name=TCONS_00035707-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
ACCLNFNEIGHVVVQKVSILGEENALTLSEVMKFITGCSSKPASGLPGKI
TVIFEKYCPENCRCKPTTSSCDIQIEVALHYTTKRDMMIALTDACRESKG
MLRY Run BLAST on NCBI transcript from alignment at sc0001353:46809..48336- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035707 ID=TCONS_00035707|Name=TCONS_00035707|organism=Clytia hemisphaerica|type=transcript|length=1528bp|location=Sequence derived from alignment at sc0001353:46809..48336- (Clytia hemisphaerica)
GCTTGCTGCCTTAATTTCAACGAAATCGGACATGTGGTTGTCCAGAAAGT
GAGCATTTTAGGTAAATTATTGACTGTTCTCTAAAATAGGAACCACGCAG
GTGGCTGACTTGAAATTTTTCCACATTCCTCAGATGGTCAGTCAATGCCT
ATCACTCGTCAAAATTTCGGTAGTTCATGAGTTCCAGAGGGGGGCTATGT
GTATTTTGCAGACCTGTCTGTAAAGTATTAAATATCAATAAGACAAAATT
TTGTTCGTCACCACTTGTTGCACTTGTTACTTTTAGTTGAAAAATTATGA
TTTTAGCCAATTTGACGTTCTGGTCTGTAAAATACCAACCAAACAGGTCA
ACTTGAAATTTTGCAAGTCATCCCATCCCGTTTGTCTTTTCAAGCCATCA
GCATTTTATAGATATTGATATTTCAGACCCACCCCTCCCCCAAAATGCTT
CCTCTATTAAAAATATAGGAAGATGCATGAAAGGTAACCCTCTCCCTTGT
CAAATCCCTAAATTTTCTCATCGTTTCTTCTCAGGCCCTAGTTGTGTATA
CTTTGCTTTCATATAAAAATACATCTTTTCACAATTCTTGTCATTACATT
TTAGGTGAAGAAAACGCTCTTACACTTTCAGAAGTAATGAAGTTCATCAC
CGGTTGTTCTTCAAAACCAGCGTCTGGGTTACCAGGGAAAATCACTGTGA
TATTTGAGAAATATTGTCCCGAAAATTGCAGATGTAAACCCACAACTTCT
AGCTGCGATATTCAAATCGAAGTTGCTTTGCACTACACTACCAAACGTGA
CATGATGATAGCTTTAACAGATGCATGCCGCGAGAGTAAAGGAATGCTAA
GATACTAATCCTATAAACGGACCGTTTTTATATAAATCTTTTGTTTTACA
AAACGACATTGCGAATCAAATCGTATAGTATTACTAAAGTGATTTTGATA
TAGCTTGCTTTTATTTTTGATAATGTATATAATATTATTTATTCATAAAC
TAGAGTATTTCAGATTTTCGCTAACAATATTTTGATCAGGAATCAGAAAT
AGGTATAGGAATATTTAACTTGATTGACTTGACTATATTAACTTGGTTAT
TTTTGTGCAAAACTTTGGTTTGAATTATCTTAAATCCTTATCCAAAGTAA
AGAGGACCTTCATTTGTTATTAACAATATCATGTATGGTACTTTTTATTT
CTTTTCGTTTATATTCATATTTGTTTTTTCATTAATTTCTGTTCCCTACA
GTGAAAGCCTTGCTAATACAATGCGTGTATTGGATTCAAAACCAAAAAGC
TCCTTCAGTACATCATGTTTTCGTTCTTTTCGTTTATTCTTACGTTTATT
TTTATTATTCTGTGCATTTTTTTTTTGTTATTGCCTTTGGTTGTTTGGCG
AAAGGTTCCATCTTTCATTCAAAGTTTTATTAAATCGTTCCGTTAAAAGT
ATATTTTTTAAATAGATGATTATGATTTAAAGAGGCTTAAATTGTGACTT
TTTTATCATTCATATTTTTAAAGTTGAC Coding sequence (CDS) from alignment at sc0001353:46809..48336- >TCONS_00035707 ID=TCONS_00035707|Name=TCONS_00035707|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at sc0001353:46809..48336- (Clytia hemisphaerica)
ATTTTAGGTGAAGAAAACGCTCTTACACTTTCAGAAGTAATGAAGTTCAT
CACCGGTTGTTCTTCAAAACCAGCGTCTGGGTTACCAGGGAAAATCACTG
TGATATTTGAGAAATATTGTCCCGAAAATTGCAGATGTAAACCCACAACT
TCTAGCTGCGATATTCAAATCGAAGTTGCTTTGCACTACACTACCAAACG
TGACATGATGATAGCTTTAACAGATGCATGCCGCGAGAGTAAAGGAATGC
TAAGATACTAAGCTTGCTGCCTTAATTTCAACGAAATCGGACATGTGGTT
GTCCAGAAAGTGAGCATTTTAGGTGAAGAAAACGCTCTTACACTTTCAGA
AGTAATGAAGTTCATCACCGGTTGTTCTTCAAAACCAGCGTCTGGGTTAC
CAGGGAAAATCACTGTGATATTTGAGAAATATTGTCCCGAAAATTGCAGA
TGTAAACCCACAACTTCTAGCTGCGATATTCAAATCGAAGTTGCTTTGCA
CTACACTACCAAACGTGACATGATGATAGCTTTAACAGATGCATGCCGCG
AGAGTAAAGGAATGCTAAGATACTAAGCTTGCTGCCTTAATTTCAACGAA
ATCGGACATGTGGTTGTCCAGAAAGTGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035707-exon-sc0001353-1575043694:48283..48336 | TCONS_00035707-exon-sc0001353-1575043694:48283..48336 | Clytia hemisphaerica | exon |
| TCONS_00035707-exon-sc0001353-1575043694:46809..47739 | TCONS_00035707-exon-sc0001353-1575043694:46809..47739 | Clytia hemisphaerica | exon |
| TCONS_00035707-exon-sc0001353-1510915933:48283..48336 | TCONS_00035707-exon-sc0001353-1510915933:48283..48336 | Clytia hemisphaerica | exon |
| TCONS_00035707-exon-sc0001353-1510915933:46809..47739 | TCONS_00035707-exon-sc0001353-1510915933:46809..47739 | Clytia hemisphaerica | exon |
| TCONS_00035707-exon-sc0001353-1491911889:48283..48336 | TCONS_00035707-exon-sc0001353-1491911889:48283..48336 | Clytia hemisphaerica | exon |
| TCONS_00035707-exon-sc0001353-1491911889:46809..47739 | TCONS_00035707-exon-sc0001353-1491911889:46809..47739 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001353 | supercontig | sc0001353:46809..48336 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000569 | HECT_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004842 | ubiquitin-protein transferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0004842 |
ubiquitin-protein transferase activity |
Blast
The following BLAST results are available for this feature:
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