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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00035682 ID=TCONS_00035682|Name=TCONS_00035682|organism=Clytia hemisphaerica|type=transcript|length=2193bp
tctagtAAGATAATTCTTGTTAACCGTTAGCCTTAATGAactacaatttt
gaaaaattaccctGTACAAGGATTATTAAAATGGATTAAAATACAAttac
aaacaacaatcaatattatTATGTTGTATAAAAATTCCTTTAACACCTCT
TTTACACtcaatcaaaattttggataatttcataattttgtaaAGAGATC
CTGTGAAAAGtcaatttaaaatttccatGCACTGTTACgcatacattaaa
ggaagaaattttggccgaaaagttcccgccaaatttaaattttctcaaat
cgaCGTCATAAAAGGGGGTATCTCAAACATTTTCACCTTAATTTTGATCC
TTGAAACCCATCatatgccaaattaaattctcgccaaaaattcttccttt
aatgtaatttcaatattacagtagtattattttttttttgttcagtattc
ttgaatagaaaaaatctaATCTTGACAAAATCAATTCCAGCAGAAAATCT
TACTATTTCACGAAATTATATTTCCatcatgcaaaatttttgactttgat
acAAGATTCTTGCAGAATCCCTCCAGTAGCATAGACAAGAGGGGCGCCCC
TCCTGACCCAAAATCTTGAATGcgttatttttggaaaataattatacttt
tgggcaaaaattagtatttttattataattgaTGTAAATTAGCATGCAAG
ATCTGAAGATATACTTAtcgtcaacggctctaacttgataaaacatggga
cagcaattcagCCATCATTTTacagaacctccaaagtcatttaattttaa
aatagtCGCAAATCtcatagaaaacaaactttGTTATCAagagagattta
acagtaagtgaaaatacagaccagaaagtcAACCATCCCATTTTATGACC
acttgtcccaagttagagctgttgacggtacacaggaaaaaattcagaaa
aattccttgtgactttttagtgaattcacaTTGAAACTAGGTGAAAAGTT
GCAACCTTTCTACAATTCACAGCTTTTTTGAGTGAATTATTGAatgattg
cagcttttcaccatCATGAATTCACTAAAATGTCACGGTGATTCTTCCTG
TGTTAATTAAACATTTTCATGAATAGCAGCATTAtagttttcatgttttc
attatagttttcatgtttttgttttatgttttcataAATTTGATTCTGCA
AAGTAAACATTGACGTgtccatcatcatcataaaattttccttttctcgt
atataaatcttatcatttgatgtccacaatataatatAAGGGCTAAAAAA
ACACAGTAATCTCTCAGAGTTTTTTATAACTCAATTCCACGAAAATGAAG
TTTGTTCCATATAAATTGGTCGATGTTACGTTAAATCTCATCGGATAAAT
TCATTCTTCAGTTCGCCAGTGTTGCATCTTTCACAGCGGCAAAAACCAGC
TACCATGATGTGATTTGATAAATACGCTTTTAGGTTTACTCGGTTGACAT
TACTGCATGGGCTGTCTGGCGGTGGGGCTGGTTATATAAGACATTAGTAG
TCAATCAGCTACTATTCAAATTGCCATTGGAAAATAATAAGCATGAGATT
TGTTTTATTCTAACAACTTctctaaaaataaagaacacAAAGCTCATACC
GTAAGTAATAGCAACTAAATTCAGGTCTGAAATTAGGACCTGTTGTCTGA
GTCTAAACATGACTAAAGTCAGTTAAAGAGAAATAGAGAGAAAAAGGCAA
AAGTCAAATCAGATAAACCAAAACAACACACCATCCACATCCACCCTGGT
AAATCAACTCGGGTTCAATTTCGGGTGTATCAGGTTCACCCGACCTTACC
tgaaattgctatttttggaaGTCCGGTTCGTTTCCAGTAAATCGGGTTAA
CCCGAATTCACGGGTTGTTCAGGTTGTTGATTTTTCGAGTATTTCGGGTT
TACCTTAAAAGTTGGGAAACCCAGGTTAGCGCGCGCCTGCGCACCGAGCA
CTTACCTGAAGAACTCGGGTTATTAGACGATTTTGAGTGGTCCTTCGCgt
ccgcaaaaatatttttttcacgaTCGAGAATTTTGAGCgcgctttttttc
tttctgcgAGAGAGTTCAAGATGGAAGGTCACGTCACTTCGTACTTCTCA
TTTACAATTTACTTTGACAACTGGATGAAGAAAATTGCCTTCA Run BLAST on NCBI transcript from alignment at sc0001349:11747..14238- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00035682 ID=TCONS_00035682|Name=TCONS_00035682|organism=Clytia hemisphaerica|type=transcript|length=2492bp|location=Sequence derived from alignment at sc0001349:11747..14238- (Clytia hemisphaerica)
TCTAGTAAGATAATTCTTGTTAACCGTTAGCCTTAATGAACTACAATTTT
GAAAAATTACCCTGTACAAGGATTATTAAAATGGATTAAAATACAATTAC
AAACAACAATCAATATTATTATGTTGTATAAAAATTCCTTTAACACCTCT
TTTACACTCAATCAAAATTTTGGATAATTTCATAATTTTGTAAAGAGATC
CTGTGAAAAGTCAATTTAAAATTTCCATGCACTGTTACGCATACATTAAA
GGAAGAAATTTTGGCCGAAAAGTTCCCGCCAAATTTAAATTTTCTCAAAT
CGACGTCATAAAAGGGGGTATCTCAAACATTTTCACCTTAATTTTGATCC
TTGAAACCCATCATATGCCAAATTAAATTCTCGCCAAAAATTCTTCCTTT
AATGTAATTTCAATATTACAGTAGTATTATTTTTTTTTTGTTCAGTATTC
TTGAATAGAAAAAATCTAATCTTGACAAAATCAATTCCAGCAGAAAATCT
TACTATTTCACGAAATTATATTTCCATCATGCAAAATTTTTGACTTTGAT
ACAAGATTCTTGCAGAATCCCTCCAGTAGCATAGACAAGAGGGGCGCCCC
TCCTGACCCAAAATCTTGAATGCGTTATTTTTGGAAAATAATTATACTTT
TGGGCAAAAATTAGTATTTTTATTATAATTGATGTAAATTAGCATGCAAG
ATCTGAAGATATACTTATCGTCAACGGCTCTAACTTGATAAAACATGGGA
CAGCAATTCAGCCATCATTTTACAGAACCTCCAAAGTCATTTAATTTTAA
AATAGTCGCAAATCTCATAGAAAACAAACTTTGTTATCAAGAGAGATTTA
ACAGTAAGTGAAAATACAGACCAGAAAGTCAACCATCCCATTTTATGACC
ACTTGTCCCAAGTTAGAGCTGTTGACGGTACACAGGAAAAAATTCAGAAA
AATTCCTTGTGACTTTTTAGTGAATTCACATTGAAACTAGGTGAAAAGTT
GCAACCTTTCTACAATTCACAGCTTTTTTGAGTGAATTATTGAATGATTG
CAGCTTTTCACCATCATGAATTCACTAAAATGTCACGGTGATTCTTCCTG
TGTTAATTAAACATTTTCATGAATAGCAGCATTATAGTTTTCATGTTTTC
ATTATAGTTTTCATGTTTTTGTTTTATGTTTTCATAAATTTGATTCTGCA
AAGTAAACATTGACGTGTCCATCATCATCATAAAATTTTCCTTTTCTCGT
ATATAAATCTTATCATTTGATGTCCACAATATAATATATAAACAATGGCC
ATGTTATTGCAAAAATCCTTTCAGTGTCTTTGGCTGCCAAATGTATAAAT
ACTACGATCCATGTACAACTGTTTGCAGGACAAAAATGTCATTCTAAAAT
TTTGAACATGTACCTTAACACCCAACTAAGCAATGTTAATTTTAGCAACC
AGAAATACAAGGGCTAAAAAAACACAGTAATCTCTCAGAGTTTTTTATAA
CTCAATTCCACGAAAATGAAGTTTGTTCCATATAAATTGGTCGATGTTAC
GTTAAATCTCATCGGATAAATTCATTCTTCAGTTCGCCAGTGTTGCATCT
TTCACAGCGGCAAAAACGCAGCTGCCATGATGTGATTTGATAAATACNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTCACAGCGGCAAAAAAGCAGCT
ACCATGATGTGATTTGATAAATACGCTTTTAGGTTTACTCGGTTGACATT
ACTGCATGGGCTGTCTGGCGGTGGGGCTGGTTATATAAGACATTAGTAGT
CAATCAGCTACTATTCAAATTGCCATTGGAAAATAATAAGCATGAGATTT
GTTTTATTCTAACAACTTCTCTAAAAATAAAGAACACAAAGCTCATACCG
TAAGTAATAGCAACTAAATTCAGGTCTGAAATTAGGACCTGTTGTCTGAG
TCTAAACATGACTAAAGTCAGTTAAAGAGAAATAGAGAGAAAAAGGCAAA
AGTCAAATCAGATAAACCAAAACAACACACCATCCACATCCACCCTGGTA
AATCAACTCGGGTTCAATTTCGGGTGTATCAGGTTCACCCGACCTTACCT
GAAATTGCTATTTTTGGAAGTCCGGTTCGTTTCCAGTAAATCGGGTTAAC
CCGAATTCACGGGTTGTTCAGGTTGTTGATTTTTCGAGTATTTCGGGTTT
ACCTTAAAAGTTGGGAAACCCAGGTTAGCGCGCGCCTGCGCACCGAGCAC
TTACCTGAAGAACTCGGGTTATTAGACGATTTTGAGTGGTCCTTCGCGTC
CGCAAAAATATTTTTTTCACGATCGAGAATTTTGAGCGCGCTTTTTTTCT
TTCTGCGAGAGAGTTCAAGATGGAAGGTCACGTCACTTCGTACTTCTCAT
TTACAATTTACTTTGACAACTGGATGAAGAAAATTGCCTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00035682-exon-sc0001349-1575043694:12952..14238 | TCONS_00035682-exon-sc0001349-1575043694:12952..14238 | Clytia hemisphaerica | exon |
| TCONS_00035682-exon-sc0001349-1575043694:12622..12780 | TCONS_00035682-exon-sc0001349-1575043694:12622..12780 | Clytia hemisphaerica | exon |
| TCONS_00035682-exon-sc0001349-1575043694:11747..12493 | TCONS_00035682-exon-sc0001349-1575043694:11747..12493 | Clytia hemisphaerica | exon |
| TCONS_00035682-exon-sc0001349-1510915933:12952..14238 | TCONS_00035682-exon-sc0001349-1510915933:12952..14238 | Clytia hemisphaerica | exon |
| TCONS_00035682-exon-sc0001349-1510915933:12622..12780 | TCONS_00035682-exon-sc0001349-1510915933:12622..12780 | Clytia hemisphaerica | exon |
| TCONS_00035682-exon-sc0001349-1510915933:11747..12493 | TCONS_00035682-exon-sc0001349-1510915933:11747..12493 | Clytia hemisphaerica | exon |
| TCONS_00035682-exon-sc0001349-1491911889:12952..14238 | TCONS_00035682-exon-sc0001349-1491911889:12952..14238 | Clytia hemisphaerica | exon |
| TCONS_00035682-exon-sc0001349-1491911889:12622..12780 | TCONS_00035682-exon-sc0001349-1491911889:12622..12780 | Clytia hemisphaerica | exon |
| TCONS_00035682-exon-sc0001349-1491911889:11747..12493 | TCONS_00035682-exon-sc0001349-1491911889:11747..12493 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001349 | supercontig | sc0001349:11747..14238 - |
Blast
The following BLAST results are available for this feature:
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