TCONS_00035675 (transcript) - C. hemisphaerica

Overview
NameTCONS_00035675
Unique NameTCONS_00035675
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length252

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00035675 ID=TCONS_00035675|Name=TCONS_00035675|organism=Clytia hemisphaerica|type=transcript|length=252bp
GGCGAACCTAGGACTTCAGACATTCTTTCGATTGACTTCACGGGTCTGCT
GACTCAGCTACATATAAACTGAACAGAATATTCGAGGGACCACTCTACCC
GAACTCAAACCGGGAACCCTTGCTTTGAGGCGCGGACGCCAAAAACATTC
GACTATCGCTTCTTAAAAAGAAAGTCGATCACCATTAAGGCAATTACCGA
TGCAGCACTGGACACTAGCAGCCATAAAGTGATATGATTTGTCCTGCTTT
TT
Run BLAST on NCBI

transcript from alignment at sc0001348:8238..8489

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00035675 ID=TCONS_00035675|Name=TCONS_00035675|organism=Clytia hemisphaerica|type=transcript|length=252bp|location=Sequence derived from alignment at sc0001348:8238..8489 (Clytia hemisphaerica)
AAAAAGCAGGACAAATCATATCACTTTATGGCTGCTAGTGTCCAGTGCTG
CATCGGTAATTGCCTTAATGGTGATCGACTTTCTTTTTAAGAAGCGATAG
TCGAATGTTTTTGGCGTCCGCGCCTCAAAGCAAGGGTTCCCGGTTTGAGT
TCGGGTAGAGTGGTCCCTCGAATATTCTGTTCAGTTTATATGTAGCTGAG
TCAGCAGACCCGTGAAGTCAATCGAAAGAATGTCTGAAGTCCTAGGTTCG
CC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_020906XLOC_020906Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00035675-exon-sc0001348-1491911889:8238..8489TCONS_00035675-exon-sc0001348-1491911889:8238..8489Clytia hemisphaericaexon
TCONS_00035675-exon-sc0001348-1510915933:8238..8489TCONS_00035675-exon-sc0001348-1510915933:8238..8489Clytia hemisphaericaexon
TCONS_00035675-exon-sc0001348-1575043694:8238..8489TCONS_00035675-exon-sc0001348-1575043694:8238..8489Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001348supercontigsc0001348:8238..8489 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.742833	0	0.841074	0	1.00175	1.5832	8.59527	8.94087	8.13763	2.3261	2.25777	5.44195	3.45825	0	0	0.452662	0	0	2.36894	0.82631	0	0	0	0.774335	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00035675 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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